Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       <---------ARR14(2)                                           <---------ANAC46                          <---------ARR11(3)    ----------->RAV1(2)           <----------DOF2                          --------->ICU4    <---------At4g35610    <-----------GT1 <---------ANAC58              ---------->DOF2    --------->At4g35610 --------->YAB1     <---------ANAC58         ---------->DOF2  --------->ARR14(2) ----->DOF2          --------->YAB1    <-----------HVH21        <-------TEIL        <------ZmHOX2a(1)   aagctcatctggctcttattctctaatagtaactctctttgggtcgcttggcatagacattactggttcataaagaaaagattgcaggatacttggaatt  6560600                                                --------->ARR11(3)                                            <---------ZAT6                     --------->AtMYB61    --------->ANAC55(2)                    <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           --------->ANAC58               <---------ANAC55(1)                <---------HSFB2a(2)           --------->ANAC58               <---------ANAC55(2)                --------->HSFB2a(2)           --------->ANAC46         --------->AHL20(2)                      <---------LBD16      <---          --------->SPL7   xxxxxxxxxxxxxxxx>smallRNA(i)                   --------->GLK1(2)   <------   ggaagtgcctcatacgcctaagaccactcgcagaacgttttattaagtgttatcttggtaatgggttgaatgcaagtttctggagggacaattggtctcc  6560700                                                        <---------AtMYB61                                                        --------->ALFIN1                                                      <xxxxxxxxxxxxxxxxsmallRNA(i)                                                   ------>ZmHOX2a(2)                                                   ====================HOX2a_HOX2a                                                  --------->GLK1(1)                                                  <---------GLK1(1)                                                  <------ZmHOX2a(2)                                                  =====================HOX2a_HOX2a                                                 --------->ARR14(2)                                                 <---------ARR14(2)                                               --------->LBD16                                              <---------ANAC58                    <---------HSFB2a(2)       <---------ANAC58        <---------ATHB12                      <---------ANAC46  ------>ZmHOX2a(1)   ----------->GT1      <---------At4g35610                    <---------LBD16<---------ZAT18    <------------CBF -------DOF2  <---------TOE2(3) <---------PCF2<---------ANAC55(2)        ---------->DOF2 -----------AGL1    --------->HSFB2a(2)   <------------CBF xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   ttttgggccactgattaagtttctaggtgaagagggtccaaggagattgcggatccctgtggtgtcctctgtttctaaagctattgtggaaaatagttgg  6560800                                                                                                   <-                                                                                                  <--                                                                                                  <--                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                             <-------                                                                                             --------                                                                                      --------->GLK1(2)                                                                                     <xxxxxxxxxxxxxxx                                                                                     --------->ARR14(2)                                                                                     <---------GLK1(2)                                                                                     <---------ARR14(2)                                                                                    <---------HSFB2a(1)                                                                                    --------->HSFB2a(1)                                                                                    <xxxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                    --------->At4g35610                                                           xxxxxxxxxxxxxxxx>smallRNA(i)     <--------                                            <---------ANAC58                        <---------At4g35610             <-------MYC3                   <---------ANAC58                     <---------At4g35610<             ------->MYC3                   --------->ANAC55(2)  <------------CBF<------NtERF2 <-----             ------->MYC2    ------------>CBF            <---------ZAT18  <xxxxxxxxxxxxxxxxsmallRNA(i)             <-------MYC2 --------->At4g35610         <------------CBF   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          <---------ALFIN1<---------At4g35610        --------->ATHB51  --------->MYB52(1) ------>ZmHOX2a(1)   attttgccatcaccacgttctgatgttgagcttcaattacacacttacttatcaactattgcccttccattgcaaacggactcggcagattcctatggtt  6560900  <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------MYB46(3) ------GAMYB ----MYB83 ----MYB46(1) ---MYB46(1) ---MYB83 ------MYB46(3) --MYB46(3)                                                                   <------------CBF ->ATHB12                                                 <------ZmHOX2a(1)   <---------ARR14(2) xxsmallRNA(se3)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxsmallRNA(i2)                             <------MYB46(1)             --------->ATHB12 xx>smallRNA(se3)                                <------MYB83                <------ZmHOX2a(1)     xx -YAB1                      <-----------GT1--------->TOE2(2)              --------->DAG2        ----- --------P     <---------ANAC46            --------->TOE1(2)       <----------ID1          <---------CCA1(2) ---P          <------------CBF    ------>ZmHOX2a(1)  ------>ZmHOX2a(1)  ---------->DOF2------>ZmHOX2a(1)   gggttgttcaaaatgtggattgtaatggtttttcttcctctaaaacatgggaggtcctgaggagaagagaagacaaaaaggattgggctcctcttatctg  6561000                                                                                               ------                                                                                               <-----                                                                                              <------                                                                                              <------                                                                                <---------ANAC58                                                                                <---------ANAC46 <xxx                                                                           <---------MYB46(3) -------                                                                           <------MYB46(1)    <------               <---------HSFB2a(2)                               --------->TOE1(2)            -------               --------->HSFB2a(2)         <---------CCA1(2)   xxxxxxxxxxxxxxxx>smallRNA(i)   <------           --------->ANAC58              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <---------ANAC58-----          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              -------->P    --------->MYB52(2) <------       <-------TEIL                   <---------GLK1(1)    xxxxxxxxxxxxxxxx>smallRNA(i)      <------- ---------->DOF2  <---------GLK1(2)   --------->GLK1(1)  ------>NtERF2     <------MYB83   <---------At4g35610 xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) >>>>>>>>>>GATA-1 --------->At4g35610 <---------AtMYB61  <------- ------>GT1--------->ANAC58          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)<--------P       --------->At4g35610   gtttaaaggtgcaacgcctagaaactcatttcatatgtggatttcaaatctcgataggctgcctactcgtgcgaggttggtttcttggggtctgcagatc  6561100       <-------GAMYB      <-----------RAV1(1)              <---------PCF5 --->GLK1(1)                         --------->LBD16          >>>>>>>>>GATA-2 -ZmHOX2a(2)                        --------->ANAC46          >>>>>>>>>GATA-3 ---ARR14(2)                        <---------LBD16           >>>>>>>>>GATA-4 ---ARR11(3)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------LBD16            --------->ARR14(2)            --------- -->ARR11(3)                   <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)     --------->ARR14(2)      --------- ---AGP1<---------MYB52(1)     xxxxxxxxxxxxxxxx>smallRNA(i)   <---------ARR14(2)          --------->ATERF1(1) -->ARR14(2)                <xxxxxxxxxxxxxxxxsmallRNA(i)      >>>>>>>>>GATA-1             <---------- -----ARR10                <---------At4g35610         <---------TGA1a        --------->HSFB2a(2) ->ZmHOX2a(2)              ======================================MYC_MYB      <---------HSFB2a(2) ---ARR14(3)               --------->At4g35610         --------->TGA1a  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) --CCA1(2)                 <-------GAMYB   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          --------->ZAT14 --At4g35610              <---------MYB46(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       xxxxxxxxxxxxxx   tcacctctctgttgtttatgctctcagtctgttgagacccgggaccatcttattctcacttgtggattcagttcttcaatctggaacatggtgcaggcta  6561200                                                                                            <--------                                                                       ------>ZmHOX2a(1)    <--------                                                               <---------RAP2.6(2)<---------ICU4                                                              --------->RAP2.6(3) --------->YAB1                                                          <---------------AtSPL3  --------->ATHB12                                                          --------------->AtSPL3  <--------HAHB4                                                          --------->MYB59      --------------->AGL15       --------->At4g35610                          xxxxxxxxxxxxxxxx>smallRNA(i) --------->ICU4       <---------At4g35610                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->HSFC1(2)  <---------AtMYB61                                <------ZmHOX2a(2)  <---------ALFIN1  <------ZmHOX2a(1)  <---------TOE2(3)                                ===========================HOX2a_HOX2a  <---------HSFC1(2) >ANAC58                                   --------->ARR11(3) --------->SPL7------>ZmHOX2a(1) >ANAC58             --------->ZAT14--------->At4g35610   <---------------AtSPL8 <---------ATHB12 -RAV1(2) ------>NtERF2          ---------->DOF2   ================================HOX2a_HOX2a xx>smallRNA(i)      <---------ZAT14<---------At4g35610 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   ggcttaggttgcagcctgttcagttcagagtttgggaaagcttactatcttggatcaagttaagtacggcctcctctccttccatcattaggaagcttgt  6561300                                                                        --------->WOX13(1)                                                                  <---------At5g28300                                         <----------DOF2   <---------ARR11(3)   --------->ANAC58          xxxxxxxxxxxxxxxx>smallRNA(i)--------->ANAC58   --------->ANAC58        --------->At4g35610           --------->ANAC46                           -   --------->ANAC46        <---------At4g35610           --------->ANAC58  --------->YAB1           < -ANAC58          <----------DOF2       <---------DAG2  xxxxxxxxxxxxxxxx>smallRNA(i)            <---- -ANAC58 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------AtLEC2   <-----------GT1               <-----   tgctcaagccactgtttgtgctatttggaagcagagaaacaaccttttgcataacttacaagacattctaccgtctatcatcttcaagaatatagaccgt  6561400                             <---------At4g35610                             --------->At4g35610                 --------->ANAC58     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                  xxxxxxxxxxxxxxxx>smallRNA(i)     <---------YAB1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------AHL20(1) <------ZmHOX2a(2)       <-----------HVH21    ------>ZmHOX2a(2) <------ZmHOX2a(2)         <---------AHL20(2) -------->ARR11(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)  --------->GLK1(2)                --------->AHL20(2) ---------ARR11(3)------->GAMYB               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       --------->YAB1 -----MYB52(1)   --------->ANAC58             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <---------YAB1 ------HVH21     --------->ANAC46  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <----------DOF2   <---   gagatcatcaattccatcaacgcaaggtgtcatcggagaaagtttagatcgcttatgagattgtggatcagatagttctgtcttttggttattataattg  6561500  Previous    Next  AGI:  At4g10613.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G33710.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains InterPro domain RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706) Range:  from: 6561035    to: 6561475    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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