Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                                                                                                -----                                                                                          --------->ARR11(3)                                                                                          --------->GLK1(2)                                                                                       <---------AHL20(2)                                                                            --------->AHL20(2)  <---- ----MYB52(1)                                                          <-------TEIL    --------->AHL20(2) -->TOE2(3)          <---------YAB1                                   <--------P      <---------AHL20(2) -->TOE1(3)       <---------YAB1                                   <---------TOE1(3)  --------->YAB1 --ANAC46       <--------HAHB4            ----------->GT1          <---------TOE2(3)  --------->AHL20(2) --->GT1        --------->YAB1   <---------YAB1           <---------ANAC55(2)   ----------->GT1 <---- --ANAC55(2)   <---------YAB1  <-----------GT1            <---------ANAC46  <---------AHL20(2) <-----   aatcccaactctcaactattattatgttattttttactatagaatggaaacttgtagattacttatatgaaggttgattaaaatgtaattaaaatctgta  6556800                                                                 --------->AHL20(1)                                                                 --------->AHL20(2)                                                             --------->AHL20(2)                                                            <---------AHL20(2)                                                            --------->AHL20(2) ---------DOF2                                      --------->ANAC58 -->TEIL   ---------->DOF2                          --------->ANAC58          <-------TEIL -----ARR11(3)                                      ----------->GT1   <---------ICU4             <--- -----ARR11(1)                                <---------WOX13(1) <---------AHL20(2)              ---- ----CCA1(2)                           <---------YAB1     --------->YAB1  <-------TEIL      <--------   tcttttttataaaaaaagtctcttcatatatgttttagttgatgagtgatggacaagtaaaaataaataaaataagtacatacgttttgttttagtgata  6556900                               <---------LBD16            --------->LBD16                             <-----------GT1             <-----------RAV1(2)                         <---------AHL20(2)            --------->CCA1(2)                <---------------AtSPL8                 <------ZmHOX2a(2)  --------->AHL20(1)------->TEIL                      --------->ARR11(3)            --------->LBD16 --------->AHL20(2) <-------TEIL--------->HSFB2a(2)   --------->ARR14(2)    <---------AGP1 ------AHL20(2) <---------------AtSPL3           <---------REM1(1)    --------->ARR11(3) ----->AHL20(2) --------------->AtSPL8 --------->ICU4 --------->AGP1  <---------ARR11(3)         <--- -ZAT6    ----------------->AGL1<---------HSFB2a(2)   <---------ARR14(2)------>ZmHOX2a(2)        <---   taaatatatgatgccaaaaatgtacatatattttctggataaatattagagttgtagatccaggtttgctatgatctagctctgtccgaaaattgcagag  6557000                                                                                        ------>ZmHOX2a(2)                                                                                      --------->ARR14(2)                                                                                      <---------ARR11(3)                                                                                      <---------AGP1                                                                                      --------->AGP1            --------->ZAT14                                                ----------->GT1            <---------ZAT14                                       --------->At5g28300 --------->ARR11(3)    <----------DOF2                                        <-----------GT1----------->GT1   ------>ZmHOX2a(2)                                  <---------DAG2     --------->DAG2<------ZmHOX2a(2) --------->ARR11(3)                         <---------ATHB12  <---------ALFIN1        <---------ARR14(2) <---------ARR11(3)                <---------DAG2     <----------DOF2   ---------->DOF2--------->GLK1(1) ------ANAC58    --------->SPL7    <----------DOF2 <-----------GT1<-------GAMYB      <---------CCA1(2) ------ANAC58  <---------SPL7   <-----------GT1   <-----------GT1----------->GT1     --------->At4g35610   cgtgatcttttctctgtagtacgaccgatttgttttactttatccaatcgttttaactttttcaccacggttaaaaaagttaaaatcagatctctaacca  6557100                                             --------->YAB1                                             <-----------GT1    --------->ATHB12                                         <---------AHL20(2)   <---------WOX13(1)                                         --------->AHL20(2)   <--------P                                        --------->AHL20(2)  <---------MYB46(3)                                        <---------AHL20(2) <---------AtMYB61         ------->TEIL             --------->YAB1          <---------MYB52(1)          <<<<<<<<<TBF1       ------->GAMYB          <---------AHL20(2)         <----------DOF2<----------DOF2      --------->MYB46(3)      --------->AHL20(2)         ------>ZmHOX2a(1)      ------>ZmHOX2a(1)      <---------MYB52(2)     --------->AHL20(2)<---------YAB1<-------GAMYB   ---------->ID1         <   ttttctcaacgaacctcgctaatatttctcatttaatcaaaatttaatcaccattaatcctttggttgattactcttttgtcctcttcttcttctctctt  6557200                                                                           <---------DEAR3(2)                                                                           <---------MYB46(3)                                                                           <------MYB46(1)                                                                           <------MYB83                                                                          <---------TOE2(2)                                                                          <---------TOE1(2)                                                                         <---------MYB52(1)                                                                 <---------ANAC58                                                                 --------->ANAC55(2)                                                                 <---------ANAC58          <------NtERF2                                      <----------DOF2         <---------MYB46(3)         <---------DAG2  ------>ZmHOX2a(1)  ------>ZmHOX2a(2)         <---   <---------ANAC58     >>>>>>>>>>>>>>>>>LFY        ==========================HOX2a_HOX2a     <------   <---------ANAC58<---------YAB1   <----------DOF2--------->TOE2(3)   <---------MYB46(3)    -------- ----------DOF2   <-----------TBP*TSS   <---------YAB1 <---------CCA1(2)<-------GAMYB        <-------   ctctttcttggtggctctcttcttatagccactgttccctttttcattgtattcctcaaatctctttacttgatcgttggttctctcaaaaatcagattt  6557300                                                                                                   --                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                             <-------                                                                                             <-------                                                                                             ------>NtERF2                                                                                           <------NtERF2                                                                                           --------->ATERF1(1)                                                                                          <----------                                                                                          ------>NtERF2                                                                                  --------->ARR11(3)                                  --------->At5g28300                           xxxxxxxxxxxxxxxx>smallRNA(s)                                  <-----------HVH21                         <---------MYB46(3)-------                                <---------ANAC58                            --------->MYB55(2)<------NtERF2                                <---------ANAC58                           <---------AtMYB61---------                                <---------DREB2C(2)                   --------->At4g35610 <---------ATERF1(1)   <---------LBD16              <---------ANAC46         --------->ZAT6   <---------MYB52(1)<-------- ------YAB1                     <---------RAP2.6(2) <---------At4g35610 --------->ALFIN1 --------->DEAR3(1) ---RVE1(1)                <---------ICU4         <------NtERF2       <---------ZAT2------>ZmHOX2a(2) ->ARR11(3)               --------->ICU4        <---------DEAR3(1)    <---------At4g35610<---------DEAR3(1) --GLK1(2)                <---------YAB1      <-----------HVH21       --------->ZAT2<xxxxxxxxxxxxxxxxsmallRNA(i)   ttatttctgggttttgttcgattttgtgatcatggcggtcattgagagcgtcggagctaatactactgtggaagctggtggtttgatctcgccgtcgccg  6557400      <-----------TGA1                                                                        -------      <-----------HVH21                                                                       ------>ZmHOX2a(2)     <---------ANAC58                                                                        --------     --------->ANAC46                                                                        <------ZmHOX2a(2)     --------->ANAC55(2)                                                                    ---------     <---------ANAC58                                                                       <-------- ---->NtERF2                                                                                --------- ------>DEAR3(1)                                                                            <-------- ------>RAP2.3(2)                                                                          <---------GLK1(1) ------>RAP2.3(3)                                                                       <---------ANAC46 ----->RAP2.3(1)                                                                        <---------ANAC58 ----->DEAR4(2)                                                                         <---------ANAC58 ----->ATERF1(1)                                                                       <------NtERF2 ---NtERF2                                                                           --------->ALFIN1 ----->ORA47(2)                                                                     <-------MYC3 ->NtERF2                                                                           ------->MYC3 -----ATERF1(1)                                                                     <-------MYC2 ---->ABI4(1)                                                                       ------->MYC2 --->DEAR3(1)                                                                       <-------PIF5 --->ANAC46                                                                         <-------MYC4 --->RAP2.3(3)                                                                      ------->MYC4 --->RAP2.3(2)                                                                      ------->PIF5 ----DEAR3(1)                                                                      --------->O2 --->RRTF1(3)                                                                      >>>>>>>>>>HY5 -->ERF1                                                                           <---------TGA1a -->RAP2.3(1)              <---------HSFC1(2)                                      --------->PIF3(3) -->RAP2.6(1)              --------->HSFC1(2)                                      <---------O2 -->RRTF1(1)               <---------HSFB2a(1)                                     --------->TGA1a -->DEAR4(2)               --------->HSFB2a(1)                                     --------->ANAC46 -->ORA47(2)             ==========================HOX2a_HOX2a                     <---------PIF3(3) --RAP2.3(1)          --------->YAB1                                            --------->ZAT18   <-- --ATERF1(1)          <-----------RAV1(2)                                       <---------WRKY38(1) -HVH21----------->HVH21 <------ZmHOX2a(1)                                ------>ZmHOX2a(2)--------->GLK1(1) -->ATERF1(1)       --------->GLK1(2)       <------ZmHOX2a(2)            <------ZmHOX2a(2)----------- >DEAR3(1)         --------->YAB1         ------->GAMYB           --------->YAB1<---------ZAT18------ -DEAR3(1)    --------->WRKY18(1)        --------->MYB46(3)      --------->ICU4----------------->PIF3(1)   ccgtcttccgtcaccagtcaagaatcaggagcttcttctaacaacgatcacggtggaaatggaatccatgatgagatcggagtccacgtggcgagatccg  6557500  <---------MYB46(3) <---------AtMYB61 --------->ALFIN1 <---------DEAR3(1) -->DEAR3(2) ->CCA1(2) >ARR14(2)                     --------->At4g35610 -ARR14(2)                    --------->ARR11(3)     --------->TOE2(3) >AGP1                        <---------ARR11(3)     --------->TOE1(3)            ------>ZmHOX2a(1) -ARR11(3)              <---------YAB1              --------->At4g35610      --------->KAN4(2)  ----- -------DEAR3(1)      --------->CCA1(2)            <---------TOE1(3)    ----------->GT1         ----- >ARR10          <---------ANAC58        <---------ARR11(3)         ---------->DOF2  ------>ZmHOX2a(1) ----->HVH21     <---------ANAC58        --------->ARR11(3)  ------>ZmHOX2a(1)<-----------GT1   -----   acggtggtgagagttttaagcgtgatatgagagagcttcacgagctcttgtctaagcttaatcctatggctaaagagtttattcctccttcacttactaa  6557600                                                                      <-----------HVH21                                                                 <-----------GT1                                                              <---------HSFB2a(1)                                                           <------NtERF2                                                          --------->LBD16                                                         <---------ANAC46                                                         <---------HSFB2a(2)                                                         --------->LBD16                          <--                                                    --------->At4g35610  <---------DOF5.7(2)    -----                                              <----------DOF2 --------->HSFB2a(1)              <-----                                             <---------ANAC58 <---------HSFC1(2)            <--------                        <---------ARR14(2)   <---------ANAC58 --------->HSFC1(2)       <---------ANAC58                       <-------GAMYB    --------->YAB1   <---------ATERF1(2)           <---------ANAC58                      <---------MYB46(3)-------->HAHB4   --------->HSFB2a(2)          --------->At4g35610                      <---------DEAR3(2)<---------ICU4   --------->ATERF1(2)        <--------P<------                   ------------>AtMYB77--------->ICU4    --------->RAP2.6(2)       --------->At5g28300   <---------MYB46(3)<---------DEAR3(1)<---------ATHB51 <---------LBD16 <---------WRKY38(1)<---------ANAC58 <-------GAMYB     ------->GAMYB   <---------MYB52(1)  ------>NtERF2 --------->ANAC46 <---------At4g35610 ---->ANAC58     <---------At5g28300 --------->YAB1 <---------At4g35610--------->DOF5.7(2) <---------ANAC58 ---->ANAC58    --------->MYB52(1)<-------GAMYB <-----------RAV1(1) --------->LBD16<---------MYB52(1) ---->ANAC46    <-----------GT1   --------->At5g28300<---------RAP2.6(2)<---------WRKY12<----------DOF2   gccagttgttaatggttttaacggcggtttcttcgccgttaataatggctttgttgctgccggaaatttccccgtcaacgaagacggtagctttcgtcgg  6557700  Previous    Next  AGI:  At4g10610.1    Description:  RBP37 (RNA-BINDING PROTEIN 37); RNA binding. similar to CID11, RNA binding / protein binding [Arabidopsis thaliana] (TAIR:AT1G32790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48581.1); contains InterPro domain Ataxin-2, C-terminal (InterPro:IPR009818); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 6557233    to: 6559483    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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