Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                  ---                                                                                                  <--                                                                                                -----                                                                                               ------                                                                                               <-----                                                                                              -------                                                                                           --------->ICU4                                                                                          <---------AHL20(2)                                                                                          --------->AHL20(2)                                                                                          <---------AHL20(1)                                                                              --------->YAB1---------                                                                      <-----------GT1    --------->YAB1                                            --------->AHL20(2)    <---------AHL20(2)    <---------YAB1                 ------>MYB83               <---------AHL20(2)--------->AHL20(2)     --------->ARR11(3)                 ------>MYB46(1)          --------->AHL20(2)  <---------AHL20(2)   ----------->GT1---               --------->AtMYB61   <-----------GT1            <---------AHL20(1)  <---------TOE1(3)<-               <---------MYB59 <---------YAB1           <---------ANAC58     <---------YAB1<---------YAB1      ------>MYB46(1)       <---------AHL20(2)          <---------ANAC58    --------->AHL20(2)<------      ------>MYB83          --------->AHL20(2)     --------->YAB1 --------->AHL20(2) <---------ARR11(3)      --------->MYB52(1)    <---------AHL20(1)    <---------YAB1  --------->AHL20(1)<------ZmHOX2a(1)    <---------MYB59    <---------MYB52(1) <---------AHL20(2) --------->AHL20(2)   <---------TOE2(3)-- <------ZmHOX2a(1)   ----------->GT1  --------------->AGL15  <---------AHL20(2)<---------AHL20(2) <--   ataggaccaaactgaaaccaaaccagttattttatttttactatatatatatatcatagcttattaaattttttacaatattataaggatattataatta  6550600     ---------->DOF2  --------->YAB1  --------->AHL20(2) <---------YAB1 --------->ICU4 -------ATHB1                                                                                       - ------>HAHB4                                                                                      -- ------->ATHB51                                                                               ------- -------HAHB4                                                                              --------->ANAC46 ------>ICU4                                                                               --------->ANAC58 -------YAB1                                                                               --------->ANAC58 ---->YAB1                                                                               --------->ARR14(1) --->AHL20(2)                                                                            <xxxxxxxxxxx ----AHL20(2)                                                                           --------->ARR11(1) -->ICU4    ---------->DOF2                                      <---------AHL20(2)     --------->ARR14(2) >YAB1 ----------->GT1                                          --------->YAB1          <---------GLK1(2) ------>AHL20(2)                                       ----------->GT1                  <---------ARR14(2) --------ICU4                                          <----------ID1        ----------->GT1  ------- ---YAB1  --------->CCA1(2)                           ----------->GT1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ------->YAB1                                       ---------->DOF2   --------->ATHB12 <------ZmHOX2a(1) -------ATHB51      ---------->DOF2      ----------->GT1       --------->AHL20(2)    <---------TOE2(3)   ataattataaagataaaagaatgaaagcgtttggcaagagcaatggtagaattagaaaggaaaaaataaaaatggttgagagtaaataaggattcgccac  6550700                                    <---------AHL20(1)                                    --------->AHL20(1)                                   --------->AHL20(2)       <------------CBF                        <---------AHL20(1)                --------->ARR11(3)           <------------CBF <----------ID1                --------->AHL20(1) -------->DAG2          <---------AHL20(2)             <-----------TBP -------->DOF2          --------->ARR11(3)   <---------AHL20(2) ---->RAV1(1)      --------->AHL20(2)  <---------AHL20(2) <---------AHL20(1) xxxxxxxxxxxxsmallRNA(i2)--------->CCA1(2)  --------->AHL20(2)                                      < -------->AGL15    <---------AHL20(2)  --------->AHL20(2)<---------AHL20(2)                      <---   aaaaagcactaaaaattgtattttaatatatggacaaatatataaattttataagttatatatattggaaaactattttgtaaatgtagagcgagtctta  6550800                                                                                    <-----------TBP                                                                                  ----------->TBP                                                                            --------->REM1(1)                                                                           <-------TEIL                                                                        <---------ANAC58                                                                        ----------->GT1                                                                        <---------ANAC46                                                                        <---------ANAC58         --------->TOE2(3)                                             <---------------AtSPL3        <---------YAB1               ------------>MYB.PH3(2)           <---------------AtSPL8       <---------ARR11(3)          <------ZmHOX2a(1)                   --------------->AtSPL8    <---       --------->ARR11(3)        <---------TOE2(3)                    <---------ANAC46           <--- ----------DOF2               <---------AHL20(2) --------->AHL20(2)<-----------RAV1(1)    <------MYB46(1) ------YAB1             ----------->GT1 --------->MYB59 <-------TEIL --------->ALFIN1     <------MYB83   tgcttttattatcttagataatcaacgagtaatttaaggagttagatagcttaaaatatacatgttctaatgtggggtacatctatatatgtaggtgaac  6550900                                                               --------->YAB1                                                      --------->ATHB12                              <--------HAHB4       <------------CBF        <----------DOF2       <---------ICU4    ------------>CBF                                  <--   <----------DOF2            --------->YAB1    <---------ATHB12                           <---------At5g28300 -------DOF2                 <---------ATHB12 --------->WOX13(1)       ----------->GT1    <---------- ------DAG2              ------------>CBF   ------------>CBF  <---------YAB1         <---------YAB1   tttttctttccttttcatttctaaactcacaatcattttttgaaaaaacaatcaattgatttctatcatcgaaatgaaaaaaacattctcatttacagtt  6551000                                                                                             --------                                                                                    <---------AHL20(2)                                                                                    --------->AHL20(1)                                                <---------YAB1                     <---------ICU4                                                --------->ICU4           <---------AHL20(2)  <-------                                              <---------ICU4         --------->AHL20(2)      <-------                        <------MYB46(1)       --------->YAB1         <---------AHL20(2)     ---------                        <------MYB83          <--------HAHB4     <---------AHL20(2)--------->AHL20(2)                       <---------TOE1(2)     <---------YAB1     <---------YAB1     <---------AHL20(2)                     <---------MYB52(1)      --------->ICU4   <---------ICU4       --------->ATHB51                    --------->ZAT2         --------->YAB1    --------->ICU4       --------->ICU4    <----------DOF2 <---------ZAT2        <---------YAB1  <---------AHL20(2)   <---------AHL20(2)  <- -------YAB1     <---------At4g35610    --------->YAB1  --------->ANAC55(2) <---------TOE2(3)-------- -GT1            ------>ZmHOX2a(1) <---------YAB1 --------->AHL20(2)<---------AHL20(2)  <---------YAB1   ctaattctttttgtcattcctctgctaggtttgtattttcatttataatcatttttatatgtaatttttatttattttaagttaattattttgaataaat  6551100                                            --------->AHL20(2)       --------->ARR11(3)                <--------HAHB4 XXXXXXXXXXXXXXXXXXXX>MIR1886.3       <---------ARR11(3)                --------->ATHB51  <---------ICU4       --------->GLK1(2)                 <---------ICU4--------->AHL20(2)      --------->RVE1(1)                 --------->ICU4 --------->YAB1 ->AHL20(2)                             <---------YAB1<XXXXXXXXXXXXXXXXXXXXMIR1886.2 --AHL20(2)                 <---------AHL20(2)      <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --AHL20(1)                --------->AHL20(2)<---------AHL20(2)                          <---------TOE2(3) >AHL20(2)              <---------AHL20(2)  <---------AHL20(1)                      <----------DOF2 ---------DOF2          --------->AHL20(2)  <---------AHL20(2)     --------->YAB1<------ZmHOX2a(1) ->AHL20(1)         --------->ICU4    --------->YAB1--------->WOX13(1)   <---------AHL20(2)   tctttaaaaaatctgttcagcaatatttatataatatgtgtcataattaattttcaattaaaaatttcatcatattgaatttaggacttttatggaaatt  6551200                      --------->ANAC55(1)                      ----------->GT1                      --------->ANAC58                      <---------ANAC55(2)                      --------->ANAC58                 <---------AHL20(2)                --------->AHL20(2)          ----------->GT1      <<<<<<<ZML2--------->AHL20(2)                                                  <-----------GT1   <---------HSFB2a(2)--------->ANAC55(2)                                       <---------AHL20(1)  <   <---------------AGL15                                                        --------->AHL20(1)  <   --------->HSFB2a(2)--------->ANAC46      <---------HSFB2a(2)           <-----------GT1     <------   --------------->AGL15           <---------ZAT6            --------->MYB52(1) <---------ARR11(3)  -   tcatactagaactagaaaattaatacgtaactatttagtgctagacctagaaaattgatagccaaacagttttttttaacaatattttcacctatttttc  6551300              <---------AHL20(2)             --------->AHL20(2)       <---------ANAC55(2)       ----------->GT1       <------MYB83       --------->ANAC55(2)       <------MYB46(1)     <---------ARR11(3)      --------->MYB59      <---------AHL20(2)      --------->MYB46(2)   --------->ARR11(3)                          --------->TOE1(3)      <---------TOE2(3)    <---------AHL20(1)                      <---------ARR14(2) <---------AHL20(2)        --------->AHL20(2)            --------->ATHB12  <---------YAB1 --------->AHL20(2)        --------->AHL20(1)           <---------YAB1 --------->TOE2(3)       ------ ---------AHL20(2)      --------->AHL20(2)           --------->GLK1(2)--------->ANAC46     <--------- ---------AHL20(1)  <---------YAB1                 <---------AHL20(2)<-------TEIL         <---------DAG2 -----GT1    <---------AHL20(2)               <---------YAB1       --------->ARR14(2)  <-----------GT1 -------->AHL20(2)----------->GT1           ----------->GT1<---------WOX13(1)      <---------AHL20(2)   aatttaattaggtaattttatggtgataatatattaagaagaagtattgtgatataatctgattgaacatatacgttaatattgttttattgccttttca  6551400                                                      --------->YAB1                                                     <---------YAB1                                             <---------ICU4                                          --------->YAB1                  <---------ARR11(3)                                         --------->ICU4             <-------TEIL        ----------->GT1                                         <---------YAB1        --------->AHL20(2)   --------->YAB1     <---------ATHB12             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <---------CCA1(2)--------->AHL20(2) --->YAB1             --------------->AGL15 <---------YAB1   --------->TOE2(3)      <---------AHL20(2) -DOF2       <----------DOF2 >>>>>>>>>GATA-1--------->ICU4  <---------ICU4--------->ARR11(3)    <----   tcatccattcattttcttttctttccacatagataaatgtgccatgataattgttttcataaacattaaatacatatatcttatatttataagtaaattt  6551500  Previous    Next  AGI:  At4g10603.1    Description:  similar to LCR2 (Low-molecular-weight cysteine-rich 2) [Arabidopsis thaliana] (TAIR:AT4G10595.1); contains InterPro domain S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); contains InterPro domain Knottin; (InterPro:IPR003614) Range:  from: 6550974    to: 6551830    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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