Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        <-----------GT1   <---------GLK1(2) ----TEIL                                                                                   --------- ---ANAC58                                                                       --------->ANAC58 ---ANAC46                                                     <-----------GT1   --------->ANAC58  <- ---ANAC58                   --------->MYB46(3)      --------->ATHB12 --------->ZAT6        <-------- ------->AtSPL8            --------->MYB52(1)       <---------YAB1   <-----------------AGL1<---------ATHB12   acataaattctccattctcaacgatttagtaaccgataacttggacaattcatcttcattgttttttatcttacacttgtggcaaacaaacaaatcatca  6548500                                                        --------->AtMYB61                                                        ------->GAMYB                                                       --------->MYB46(3)                                                  --------->ANAC58                                              --------->YAB1  <----------DOF2                                           --------->YAB1 <---------CCA1(2)       --------->ANAC58    --------->YAB1                   <---------ALFIN1<-----------GT1              --------->ANAC46   >>>>>>>>>MYB98                   --------->ANAC46 --------->WOX13(1)           --------->ANAC58 >YAB1                            --------->ANAC46--------->ANAC58       --------->YAB1 ---------DOF2                   --------->MYB46(3)<---------ATHB12   --------->YAB1       --------->YAB1 -ICU4 --------->MYB52(1)  ------->TEIL   <-------TEIL-------->P<-----------GT1 <-----------GT1   cctttaacataacgagaacaccatgtatgaacccaaacaccacattcatcacaatcaaccatctctttaccatcatcaaaattcacaccacaaacacaat  6548600                                       --------->At4g35610                                     --------->REM1(1)                                  <---------ANAC58                             <-----------RAV1(1)                           <---------ANAC46                      --------->ARR14(2)                  --------->ANAC46<---------ANAC58   --------->LBD16            --------->YAB1 <---------ANAC58         --------->ANAC46           <-------TEIL    <---------ANAC58      <---------At5g28300       <---------ATHB12<---------ATHB12<---------At4g35610                          <----------DOF2       <---------YAB1 <---------ARR14(2)        <-----------GT1                 <---------GLK1(2)   -   ctactgtccatgattcataaacccaatcttcgtgtggcttcatctcaaatttacccccaaaaaaaaaactctaaatttctctgattctttcacaaattaa  6548700                                 --------->ANAC58           --------->LBD16       --------->ANAC58                       --------->ANAC46<---------ARR14(2)          --------->LBD16  <-----------HVH21            <---------YAB1<---------ANAC55(2)   --------->GLK1(1)    <----------DOF2        <---------At4g35610    --------->ANAC55(2)   <---------GLK1(1)  --------->HSFC1(2)       --------->At4g35610    <---------ANAC46  --------->GLK1(2) -------->LBD16       <---------HSFC1(2)  <---------MYB52(1)--------->YAB1       <----------DOF2-----   cccagaaatctccctgaatatcgaagctttgtcaaacccaattcgtttcttctgaacgacgattgtaatgttacgcgaaatagctttgcgattcttgata  6548800                                                                            --------->ICU4                                                                          --------->YAB1                                                                          <--------HAHB4                                                                          --------->ATHB51                                                                          <---------ICU4               <---------ANAC46                                          --------->ICU4               <---------ANAC55(2)                                       <---------YAB1               ----------->GT1                                         --------->TOE2(3)      <------          --------->YAB1                                           <------ZmHOX2a(1)         <-------   --------->DAG2                                              <---------ARR14(2)            <-------  ---------->DOF2  <---------CCA1(2)                        *TSS--------->CCA1(2)          ---------- ------>GT1    --------->ANAC55(2)                     <----------ID1  --------->YAB1--------->CCA1(2)   gaaaaaaagctatcttgacgtaaatctatggttctcgcttcccatttctgaacgaagaagacgaagataggaaccataattactaaaatatgggccggta  6548900                                                                                      --------->MYB52(1)              <------NtERF2       <------NtERF2          <------MYB46(1)              ------>MYB83---       --------->ALFIN1 <------NtERF2                    <------MYB83                 ------>MYB46(1)    <------NtERF2      <------NtERF2                    <---------------AtSPL8      <---------MYB59   --------->LBD16     --------->LBD16     --------->LBD16                          --------->AtMYB61   <------NtERF2      <---------LBD16    --------->ATERF1(1)                        --------->MYB46(3)  <---------LBD16    <---------LBD16 --------->ALFIN1   --------->MYB59          xxxxxxxxxxxxxxxxxxxx <---------LBD16 --------->ALFIN1<------NtERF2        --------->ARR14(2)        <---------SPL7    <-- ---MYB52(1) <------NtERF2       --------->LBD16      <---------ARR14(2)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --RAP2.6(3)<---------LBD16     <---------LBD16      <------ZmHOX2a(1)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --DEAR3(2)<---------LBD16 --------->ALFIN1<------NtERF2<---------------AtSPL3 xxxxxxxxxxxxxxxxxxxxxx ------->AGL1--------->LBD16   <---------LBD16 <----------DOF2              --------->ETT(2)xxxxxxxxx   tgggccgggatgggccgggatgggccgggatgggccgggatgggccgggcttagaggataggtactgttttttttttgtggacggaccaaacgatttcat  6549000                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                            <------ZmHOX2a(1)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                   <xxxxxxxxxxxxxxxxsmallRNA(i)    <---------WRKY12                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <-----------GT1             --------->At4g35610<xxxxxxxxxxxxxxxxsmallRNA(s)     --------->At5g28300            ----------->GT1xxxxxxxxxxxxxxxxxxx>smallRNA(s2)   <---------At5g28300            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <xxxxxxxxxxxxxxxxsmallRNA(i)       ---------->DOF2     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <-----------HVH21 <---------ICU4 ------>AHL20(2)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      <-----------GT1      <---------YAB1   <- xx>smallRNA(se3)   --------->MYB52(1)---------->DOF2        <---------DOF5.7(2)  --------->ICU4   <- -------AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        --------->MYB52(1) --------->YAB1     -- >smallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ----------->GT1  --------->AHL20(2)          -- xxxxxxxxxxxxxx>smallRNA(si3) --------->WRKY18(1)---------->DOF2------->GAMYB  <---------ATHB12   ---   ttaaaaaccaaaagcagataaaaaacagaatggtcaagctcaaagaggaatacaagcggaaattaacggtcaaataactaaatcataatgaagttagcaa  6549100                                                                   --------->TGA1a                                                                   <---------TGA1a                                                                   --------->ANAC55(2)                                                                   <---------O2                                                                   --------->O2                                                                   --------->bZIP60(1)                                 --------->REM1(2)                 <---------ANAC55(2)                                --------->ALFIN1                   --------->bZIP60(2)      xxxxxxxxx                               <-------MYC3                        <---------bZIP60(1)    xxxxxxxxxxx                               ------->MYC2                    <-----------HVH21        <---------HSFB2a(2)                               <-------MYC4                    <-----------TGA1         --------->HSFB2a(2)                               <-------MYC2                   --------->ANAC58        ----------->RAV1(2)                               ------->MYC3                   --------->ANAC58    --------->ARR14(2)                               ------->MYC4                   --------->TGA1a     --------->GLK1(2)                              --------->ANAC55(2)             --------->O2        <---------ARR14(3)                              <---------TGA1a                 --------->bZIP60(2) --------->ARR14(3)                              <---------O2                    --------->ANAC46    --------->ARR11(3)        --------->ANAC58      <---------ANAC46            --------->AtMYB61       <---------ARR11(3)        --------->ANAC58      <---------ANAC55(2)        --------->MYB46(3)       <-----------ARR10      <---------AtLEC2        --------->O2         <---------HSFB2a(2)          xxxxxxxxxxxxxxxx>smallRNA(i) --------ARR11(3)             --------->TGA1a      --------->HSFB2a(2)         xxxxxxxxxxxxxxxx>smallRNA(i) --------AHL20(1)             <--------ABF1      <---------At4g35610          <---------MYB59    ---- ------->AHL20(1)      ---------->DOF2         xxxxxxxxxxxxxxxx>smallRNA(i)  xxxxxxxxxxxxxxxx>smallRNA(i) ------->ARR11(3)      =================bZIP_DOF --------->At4g35610    --------------->AtSPL8  <---- ------>YAB1           =================================================bZIP_DOFxxxxxxxxxxxxxxxx>smallRNA(s)   aaatatttgcacgtataatttagcctaaagacacgtgtagaagatgtgttcttctgaaaaccactcgtcacgtcgtagtaccaaaatcttctgggtcgat  6549200                                                                          <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                          <---------REM1(1)                                                                         <---------TOE2(3)                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                --------->ANAC58                                                                --------->ANAC46                                                                --------->ANAC58                                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             --------->ANAC58   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                             --------->ANAC58   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                         --------->LBD16      <---------ALFIN1                                        <---------LBD16       --------->REM1(1)           <---------ATHB12                                        <---------HSFB2a(2)  <---------ZAT14          <------ZmHOX2a(2)                                        --------->HSFB2a(2)  --------->ZAT14        <------ZmHOX2a(1) xxxxxxx>smallRNA(i)                   <---------LBD16     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxx>smallRNA(i) <---------ARR11(3)  <---------ANAC46   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ----->YAB1        --------->ARR11(3) <---------LBD16   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     ---- --ZmHOX2a(2)  ---------->DOF2 --------->At4g35610 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --------->WOX13(1)   catatgaaaccgcttcaaaaagatttcgaaaaccgctaacttcggggaagctatatcactgactacacccaatttgatgtagtctaggatcaatctttct  6549300                                <-----------GT1                            <---------ARR11(3)                                                   ----          --------->YAB1    <---------ARR14(2)                                                  <----   --------->TOE2(3)        --------->ARR11(3)                                                  ----- xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                     ---------->DOF2     ----------->GT1   ----- ------->TEIL             ----------->ARR10   --------->ICU4                <-------TEIL      ------- ----------->AtSPL8 ----------->TGA1        --------->WOX13(1) --------->GLK1(2)            ---------   atgtaccttgaataaaaacagaatgacgaagatattacttcttgagcaattagggaaacaaaaagaatttggaagacatacagaaaaatcgaaggaaaga  6549400  Previous    Next  AGI:  At4g10600.1    Description:  PHD finger family protein. similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G32810.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO62897.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011) Range:  from: 6547782    to: 6548860    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version