Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <<<                                                                                       --------->MYB52(1)                                                                                       ------>MYB46(1)                                                                                       ------>MYB83                                                                                      --------->MYB55(1)                                                                                     <---------MYB111(1)                                                                                     --------->MYB46(3)                                                                  --------->LBD16    --------->AtMYB61                                                       ----------->RAV1(1)           <---------MYB46(2)                                                      --------->ANAC46               <---------MYB55(2)                                                 --------->ARR14(2)              --------->MYB46(3)--                         --------->ANAC58        <---------ARR14(2)   --------->HSFC1(2) --------->ANAC58               ------>MYB83                     --------->GLK1(1)--------->HSFB2a(2) <---------MYB52(2)               ------>MYB46(1)              --------->YAB1       <---------HSFB2a(2) <---------MYB111(2)             --------->TOE2(3)             <---------ATHB12      <---------HSFC1(1) --------->ANAC46             <---------MYB59      <---------WOX13(1)--------->ANAC46  <---------HSFC1(2) --------->ANAC58    --------->TOE1(2)    --------->ANAC58--------->WOX13(1)<---------YAB1     ---------->DOF2   -----   gcaaaacctagaaaacctaatccagactcgaaacagattgattcaatcacaaatccacaacatgattccagaaacatccctaaaccaccaaacgaaaaca  6478800                                                                                              -------          ---------->DOF2                      <-----------TGA1                           ------>ZmHOX2a(1) <<<<<<ARR2                                  <------NtERF2  <---------YAB1       <-----------HVH21 ------->YAB1                              <---------DEAR3(1)<---------ICU4     <----------DOF2 ---->WOX13(1)----------->GT1 --------->At4g35610         --------->YAB1---------->ID1   --------->TOE2(3)   atcaaatcgagtaaaagagtaaaaataccatcagcaatctcatcgtcgtcgtcatcaacatcatcatcgtcttcgtctccatctttcacatcctcaacaa  6478900                                 ------>MYB46(1)                        --------->ZAT6               --------->At4g35610  --------->YAB1                                               <---           ------>ZmHOX2a(1)     ------>MYB83                                              <---------YAB1 -->MYB46(3)   <---------At4g35610 <---------ATHB12    <---------GLK1(2)         >>>>>>>>>TBF1  -----   caacatcgttctccttctgctccataacacaaaccaaatcaaaatcgaacaaaaatcgattctcttaaaaaacaaatagagaagaagaagattacaatac  6479000        --------->At4g35610        <---------At4g35610      --------->REM1(1)     <-------TEIL  <---------At4g35610                                          ------->TEIL  --------->At4g35610                               ------>ZmHOX2a(1)           <<<<<<<<<TBF1 ------LBD16     <---------AHL20(2)                --------->TOE2(3)   <---------At4g35610          < ------>RAV1(2)<----------DOF2          ------>ZmHOX2a(1)<------------ATHB5  <<<<<<<<<TBF1  <--------   ctggagcttcatctgctctttaatggcatccataagagcctcctcattcacttcctcaataactggacctggcatcttcttcttcttcaacctcttatct  6479100                                                     -------->P                                                    <-----------GT1                                                  <---------MYB52(2)                           <-----                                                <-----------ARR10                             <------                                            <---------At4g35610                               <------              ----------->GT1               <------NtERF2                                --------->ALFIN1           ---------->DOF2                  --------->At4g35610                      ---------->DOF2   <---------LBD16                       --------->ZAT14                         ------->TEIL ------- <<<<<<<<TBF1----------->GT1             <---------ZAT14 <----------DOF2   <---------ANAC46   <------ -CCA1(2)<------ZmHOX2a(1)             --------->At4g35610   *TSS         <---------------------WRI1-   tcttcttcggaggaaaagataaaaacgaaaacccttgaaacagcgcagcgaaactaacccttttctcagtttcagtggcgatgaatataaagaggggcgt  6479200     --------->ATHB12  ----------->GT1 ----SPL7                                                      <---------AHL20(2) ---ANAC58      -------->P                                    <---------AHL20(2) ---ANAC58    <---------SPL7                                  --------->AHL20(2) ---->GT1    <---------ANAC58                             <---------AHL20(2) ---ANAC46   <---------ANAC58                             --------->AHL20(2)                <-------- -------->ARR11(3)                                    <---------TOE2(3)             --------->TOE2(3)   aagatagtgatttgggcttaccctatcgtttaatgggccttagaaatagttcgtttaagttttattaattagcccattagataatacattagccccaaac  6479300              <---------AHL20(2)              <---------ARR11(3)              <---------ANAC58                      <-----------GT1              --------->AHL20(2)              <---------ANAC58                     <-----------GT1              <---------AHL20(1)              <---------ANAC46                    <---------AHL20(2)              --------->ARR11(3)            <---------ANAC46                     --------->YAB1<-----              --------->AHL20(1)         <---------bZIP60(2)                --------->MYB46(3) ------       --------->YAB1       <---------ZAT18<---------AtMYB61               --------->ANAC58    <-----      <---------YAB1        --------->ZAT18--------->ALFIN1                --------->ANAC58    <----- -ALFIN1     --------->AHL20(2) --------->AtMYB61          --------->YAB1--------->MYB46(3)  ------->TEIL   tatttgttttcataaatatattagcccaagtccaccaattctgatgtggtgtgttttccattgataactaaaaaaacaaccaattttaacgcatgaatat  6479400                                                                                                 <xxx                                                                                                 <---                                                                                                 <xxx                                                                                                <xxxx                                                                                                <xxxx                                                                                                <xxxx                                                                                               ------                                                                                               <xxxxx                                                                                               <xxxxx                                                                                              <xxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            <xxxxxxxx                                                                                            <xxxxxxxx                                                                                        <------ZmHOX2a(2)                                                                                        --------->CCA1(2)                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                       --------->AGP1                                                                                       --------->ARR14(2)                                                                         <---------ANAC58  <xxxxxxxxx                                                                         <---------ANAC58 <xxxxxxxxxx                                                                       <-----------GT1 <---------ARR11(3)                                                                    --------->ATHB51   --------->ARR11(3)                                                                    <---------ICU4     <---------ARR14(2)                                                                 --------->YAB1  <xxxxxxxxxxxxxxxxxxx                                                               <---------YAB1 --------------->AGL15<x                                                         <---------AHL20(2)   <---------------AGL15-- ----ARR14(2)                            <---------MYB46(3) <---------YAB1   ----------------->AGL3<x --->ARR11(3)                            ----------->GT1 --------->AHL20(1)  ----------------->AGL2-- ----ARR11(3)                     <---------ANAC55(2)    --------->AHL20(2)  <-----------------AGL3-- ------ARR10       <-----------GT1<---------YAB1        --------->AHL20(2)<----------DOF2<xxxxxxxxxxx   ctaggtcgtttagtttttttttttctattacagattacgagagttgttacatagacaattttattatgcataatttctttcccttattagatccacgata  6479500                                                                                                   <x                                                                                                   xx                                                                                                   --                                                                                                   xx                                                                                                  ---                                                                                                  xxx                                                                                                  <--                                                                                                  <xx                                                                                                  <--                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 xxxx                                                                                                <----                                                                                           xxxxxxxxxx                                                                                           <xxxxxxxxx                                                                                           xxxxxxxxxx                                                                                           xxxxxxxxxx                                                                                           <xxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                 <---------------AtSPL8                                                                                <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                               --------->ATHB51 <xxxx                                                                               --------->YAB1   <xxxx                                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                              --------->ICU4    xxxxx                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                              <---------YAB1<xxxxxxxx                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                            <----------DOF2<xxxxxxxxx                                                                           <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->ANAC58                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    --------->bZIP60(2)                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)    --------->ANAC58                                                    xxxxxxxxxxxxxxxx>smallRNA(i)   ------>NtERF2                                                        <xxxxxxxxxxxxxxxxsmallRNA(s)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                               --------->SPL7 xxxxxxxxxxxxxxx  <---------ALFIN1                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                     --------->MYB52(1) <xxxxxxxxxxx --------GT1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                   <---------SPL7   <xxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                    <xxxxxxxxxxxxxxxxsmallRNA(s)<--- xxxxxxxxxxxxxxxsmallRNA(i2)                                        <---------ANAC58  <xxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                   <---------ANAC58  <xxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxx --->CCA1(2)  xxxxxxxxxxxxxxxx>smallRNA(s)                         <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxx xxxxxxxxxxxsmallRNA(s)                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                   xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxx xxxxxxxxxxsmallRNA(i)                                             <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxx xxxxxxxxxxxxxxxxsmallRNA(le3)                                    <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxx xxxxxxxxxxxxxxxxsmallRNA(se3)                                    <xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxx xxxxxxxxxxxxxxxxsmallRNA(fl3)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxsmallRNA(si3)                                   xxxxxxxxxxxxxxxx>smallRNA(s) <xxxxxx >ANAC58      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              ------>ZmHOX2a(1)    xxxxxxxxxxxxxxx >ANAC46      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) >ANAC58     <<<<<<<<<TBF1                                    <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxx xxxxxxxxxxxxxxxsmallRNA(le3)                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<--- xxxxxxxxxxxxxxxsmallRNA(fl3)                               xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxx xxxxxxxxxxsmallRNA(le3)                                 xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxx xxxxxxxxxxxsmallRNA(si3)                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) <xxxxxxxxxxxxxx xxxxxxxxxxsmallRNA(si3)                     <---------ARR11(3) <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxx xxxxxxxxxxsmallRNA(se3)                     --------->ARR11(3)----------->RAV1(2)  <xxxxxxxxxxxxxxxx xxxxxxxxxxxxxxsmallRNA(le3)                 --------->ARR14(2)<---------ICU4<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxsmallRNA(le3)    <---------WOX13(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxx xxxxsmallRNA(si3)        xxxxxxxxxxxxxxxx>smallRNA(i) <---------ANAC46xxxxxxxxxxxxxxxx>smallRNA(i)xx xxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <-----------ARR10xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxx ------->ANAC58        xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        --------->RVE1(1)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxx ------->ANAC46   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------ANAC58<xxxxxxxxxxxxxxxxsmallRNA(s)<x ------->ANAC58   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) <---------ANAC58<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxsmallRNA(le3)<----------DOF2  --------->CCA1(1)xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxx   tacgacacctcattcttcttctccatgcgcttgatggataccaaaaatatcttctctgcgtataatcctggcgaacggctataattgtacatcgttgtag  6479600          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <---------ZAT18     <xxxxxxxxxxxxxxxxsmallRNA(s)     <---------ALFIN1    <xxxxxxxxxxxxxxxxsmallRNA(s)    <xxxxxxxxxxxxxxxxsmallRNA(i)    --------->ZAT14    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <---------ZAT18   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)   ------>ZmHOX2a(1)   <xxxxxxxxxxxxxxxxsmallRNA(s)  <xxxxxxxxxxxxxxxxsmallRNA(s) ----------->RAV1(2) xxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---->ZmHOX2a(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ------>GLK1(1) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ----ZmHOX2a(2) xxxxxxxxxxxxxxxxxxsmallRNA(se3) -------GLK1(1) ------AGP1 ------ARR11(3) ----->ARR14(2) ----->ARR11(3) ----->ARR14(3) xxxxxxxxxxxxxxxxx>smallRNA(si3) -----CCA1(2) xxxxxxxxxxxx>smallRNA(fl3) xxxxxxxsmallRNA(i) xxxxxx>smallRNA(i) xxxxxx>smallRNA(s) xxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxsmallRNA(fl3) xxxxxxxx>smallRNA(le3) xx>smallRNA(s) xxxxxxxxxxsmallRNA(se3) xxxxxxxsmallRNA(fl3) xxxxxxxsmallRNA(le3) xxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxx>smallRNA(se3) xsmallRNA(fl3) xsmallRNA(se3) xxxxxxxxxxxxxxxsmallRNA(si3) xsmallRNA(le3) xxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxx>smallRNA(se3) xxxxxxxxxxxxsmallRNA(si3) xxxxxxxxsmallRNA(fl3) ------ARR14(3)     <---------AHL20(2) xxxxxxxxsmallRNA(se3) xxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxsmallRNA(si3) x>smallRNA(i)--------->TOE2(3) xxxxxxxxxxxxxsmallRNA(si3) ------ARR14(2)    <---------ATHB12 xxxxxxxxxxsmallRNA(si3) xxxxxxxx>smallRNA(fl3) xxxxxxxxxsmallRNA(si3)                 --------->AHL20(1) xxxxxxxxxxxxxxxsmallRNA(le3)           <---------AHL20(1) xxxxxxxsmallRNA(i2)--------->AHL20(2)  --------->AHL20(2)                                        xxx xx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <---------ANAC46                            ----- xxxxxxxxxxxxxx>smallRNA(i)             <---------AHL20(2)                                  <-------- xxxxxxxxxxxxsmallRNA(se3)    --------->GLK1(2)    --------->At4g35610                    --------->ICU4 xxxxxxxxxsmallRNA(se3)       <---------ARR14(2)   --------->ZAT2                        <---------YAB1 xxxxxxxxxxxxxxxxxxxsmallRNA(le3)    --------->YAB1<---------ZAT2                      <xxxxxxxxxxxxx xxxxxxxxxxxxxxxsmallRNA(s)   <---------ARR11(1) <xxxxxxxxxxxxxxxxsmallRNA(s)        xxxxxxxxxxxxxxxx xxxxxxxxxxxxsmallRNA(le3)   <---------CCA1(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ICU4   atctcctgcacacttgcctcaattaatctgcaaatctattaataaattgcagtagctgggattcaaactccaaacctcttagtatataagtattaatgaa  6479700  Previous    Next  AGI:  At4g10480.1    Description:  nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative. Identical to Nascent polypeptide-associated complex subunit alpha-like protein 4 [Arabidopsis Thaliana] (GB:Q9SZY1;GB:Q9ZSA6); similar to NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) [Arabidopsis thaliana] (TAIR:AT1G33040.1); similar to unknown [Populus trichocarpa] (GB:ABK93574.1); contains InterPro domain Nascent polypeptide-associated complex NAC (InterPro:IPR002715); contains InterPro domain Nascent polypeptide-associated complex, alpha subunit (InterPro:IPR016641); contains InterPro domain Ubiquitin-associated/trans Range:  from: 6477872    to: 6479161    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version