Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             --------->HSFC1(2)                                                                           <---------HSFC1(2)                                                                           <---------HSFB2a(1)      <                                                                           --------->HSFB2a(1)    <--    --------->ZAT14     ------->GAMYB                                     ------->TEIL            ---  --------->ANAC46  --------->MYB46(3)                 --------->ANAC58--------->ANAC58         <----  --------->bZIP60(2)----------->RAV1(1)               --------->ANAC46--------->ANAC58       <------ --->ANAC46       ----------->RAV1(1)          ------------------------>ANAC81           --------->ANAC58 ->ANAC46    --------->GLK1(1) --------->AtMYB61       --------->ANAC58--------->ANAC46  --------->ANAC58   aaacacatcactcacaaatccaacaacagaacaccaaaactgaaacaaaaatcaaacacacaagagacaaaacacgaaccttcttctcaccaaggaagtt  6464100   --------->TOE2(3) ------->TEIL --------->GLK1(2)     <---------------AGL15 ---------GLK1(2)      --------------->AGL15 -------ANAC55(2)     ----------------->AGL3                                                    ----- ------>ANAC55(2)   <-----------GT1         <------ZmHOX2a(1)                                   ----- -------GT1     <---------YAB1         --------->ATHB12                                         ----- ---HSFC1(2) <---------YAB1            --------->YAB1                     ---------->DOF2   ---------   acgaatctcaatactcttattgttaccatcaatagaagcattgataggaaaatgagcatacacaaatctcattctataaagaaaaccttgagtaacacca  6464200                                                                                    <---------ANAC46                                                                                   <---------TOE2(3)                                                                                  <---------TGA2(2)                                                                                 ----------->TGA1                                                                                 ----------->HVH21                     ---------->DOF2                        ------>MYB46(1)    --------->At4g35610     <---------GLK1(2)                                      ------>MYB83       --------->ZAT2    <---  --------->YAB1  <---------ANAC58                        --------->AtMYB61    <---------At4g35610 ---->ANAC58      <---------ANAC58                        <---------MYB59 --------->YAB1         <--- ---->ANAC46      <---------ANAC46                  --------->HSFB2a(2)   --------->TOE2(3)      <--- ---->ANAC58 <---------ICU4                         <---------HSFB2a(2)--------->WOX13(1)        <--- >ZAT6    --------->YAB1    <-----------ARR10   <---------SPL7      --------->GLK1(2)         -------   gcaatgagattatcaacatggcttaaagcagttctaatcgaagcacttgtcttacgagaaccaaaccaagaatcaatcttaagctgacgttttccagtga  6464300                                  <---------ANAC46                                  <---------ANAC58                                  <---------ANAC58                              <---------At4g35610                                           <--------                              --------->At4g35610                                        --------->DOF5.7(2)    <----------DOF2         <-----------RAV1(2)                                        <---------ANAC58    ==================================================bZIP_DOF    --------->TOE1(2)    <---------ANAC46 ------ANAC46              <-------TEIL     --------->O2        ------->TEIL           <---------ANAC58 ------ANAC58             --------->GLK1(2) --------->TGA1a   --------->WRKY12<---------ATHB12------- ------bZIP60(2)  <---------GLK1(1)         <---------O2      --------->WRKY38(1)     ---------->ID1 ------ANAC58     --------->GLK1(1)         <---------TGA1a<---------ANAC46 --------->WOX13(1)------- ---->HVH21 --------->At4g35610<---------GLK1(2)      <-----------GT1    --------->TOE2(3)--------->WRKY12   cttggtctttaatcaactggaaatcgagattcagatgcttgaagtcacgagtgagtttacctcgtggaccttcgacctcaatcaccttggcgtttacctt  6464400             <------NtERF2          --------->ATERF1(1)          <------NtERF2          --------->ALFIN1          <---------MYB52(1)         <---------SPL7         ------>NtERF2         <-----------HVH21        --------->DEAR3(1)       <------NtERF2       --------->RAP2.3(1)       --------->ATERF1(1)      ------>NtERF2      <---------ATERF1(1)     <---------DEAR3(1)     --------->DEAR3(1)    --------->ATERF1(1)    <------NtERF2                                                                                <---    --------->RAP2.3(1)                                                                    <---------TOE1(3)   <---------RAP2.3(1)                                                                     <---------TOE2(3)   <---------ERF1                                                                      <---------ANAC58   <---------ATERF1(1)                                                                 <---------ANAC58   ------>NtERF2 --------->GLK1(1)                                                   ------>NtERF2<--  <---------RAP2.3(3)                                                               <---------DEAR3(1)  <---------RAP2.3(2)                      ----------------------->TaNAC69(2)      --------->RAP2.6(3)  <---------DEAR3(1)           <---------HSFB2a(2)            ----------->HVH21   <---------ATERF1(1) ---------AGL1  <---------KAN4(2) <------ZmHOX2a(1)     <---------ANAC58         ----------->HVH21<-- -->TOE1(3)<---------DEAR3(1)  --------->HSFB2a(2)      <---------ANAC58        --------->ATERF1(1) -->TOE2(3)<---------ANAC46    --------->LBD16        <-----------GT1    <----------DOF2<----------DOF2   aatggcgacgccgtcggggatgtccatagtctccgaggacaaaatggtcttcattttttcgtctctgagggggaactttggagacgacggcttgaggttt  6464500              <---------------AtSPL8             <---------TOE1(3)     ------->GAMYB  <---------DOF5.7(2)  --------->MYB52(1)                    *TSS <-----------TBP ------ANAC46<---------TOE2(3)       ---------->DOF2                               --------->YAB1<--- -------TOE2(3)   <---------ZAT14 --------->TOE2(3)                                --------->TOE1(3) -------TOE1(3)   <-------TEIL    --------->TOE1(3)                                --------->TOE2(3)   agggtaacggagtttaagggtacagagagaagaaaaccctaaagcttatatataggtcgtctctaggttttgtttttggttttaatcttaaaaacaactc  6464600                                       <---------AHL20(2)                           <---------AHL20(2)                                   <---------AHL20(2)                               <---------AHL20(1)                                  <---------AHL20(2)                <------ZmHOX2a(1)           -----                                  --------->AHL20(2)            ---------->DOF2     --------->AHL20(2)                              <---------AHL20(2)        --------->AHL20(2)         --------->AHL20(2)                             --------->AHL20(2)         <---------AHL20(2)     --------->AHL20(2)                             <---------AHL20(2)       <---------------AGL15    <---------AHL20(1)                            --------->YAB1            ===============================================                        --------->AHL20(2)           --------->TOE2(3)         <---------AHL20(2)       <---------ICU4   <---------AHL20(2)         --------->ICU4 <---------TOE2(3)<---------AHL20(2) -------DOF2         <----------DOF2   --------->AHL20(2)<---------YAB1        --------->AHL20(1)   ttttaaaaatcatttcattttttcttttaattttaattttataaatttttgtattcattaaaatagtaaaggataacttattttattaaattttcaaatt  6464700                                     --------->ATHB51                                     -------->ATHB1                                    <---------AHL20(2)                                    --------->AHL20(2)      <---------ARR14(2)                 ----------------->AG<---------ICU4         --------->ARR14(2)            <---------ATHB12                 ----------------->AGL1<---------YAB1  ----------->GT1                  --------->WOX13(1)         <-------TEIL               --------->ICU4   ----------->GT1              <xxxxxxxxxxxxxxxxxx ------>GT1 <---------YAB1          <---------ATHB51 <----------ID1         <----------DOF2 ==================================MADS_MADS      ---------->DOF2     ---------->DOF2<-----------HVH21   gaaaatacaaattcattataccaaaattgaaaatgcaaattattacaaaaacaaaaggagaaaatcccctaaaaaagactttttaagtgtcaaccatttg  6464800               <---------ARR14(2)               --------->ARR14(2)            --------->YAB1              <------ZmHOX2a(1) <---------AHL20(1)            <---------TOE1(3)   --------->AHL20(1)      --------->TOE2(3)            <---------TOE2(3)   --------->AHL20(2)    --------->GLK1(2)       <----------DOF2          <---------AHL20(2)<------ZmHOX2a(1)   <-----------GT1           --------->YAB1 <---------YAB1                        --------->GLK1(2) xxxxsmallRNA(i2)       ----------->GT1     <---------ATHB51                 ---------->DOF2<--------   cattttaaacttttaaggatttggactcgtataataaattagaacaattataggataatctaaatccctaaaccaaaaaaaaagaatttgcattataaat  6464900                 <---------AHL20(1)                 <---------AHL20(2)                 --------->AHL20(2)                                                             -----              <---------ICU4                                                                   ------             --------->ICU4                                                                    ------             <---------YAB1       --------->ARR11(3)                          <------MYB46(1)  ------           --------->YAB1         <---------AHL20(2)                          <------MYB83     ------ <---------TOE1(3)                <---------AHL20(1)          <---------ZAT6<---------WOX13(1) ------ <---------TOE2(3)<---------AHL20(2)             <----------ID1           --------->ATHB12     ------ -YAB1    <---------YAB1          --------->AHL20(1)    --------->ZAT6   <---------YAB1        <-----   actaaggtagttttgataattaattttctgtgttaatatatagaaaacgataagacaaacactagtgtttgaagtttgattggtaaccctgtaccatacg  6465000  Previous    Next  AGI:  At4g10450.1    Description:  60S ribosomal protein L9 (RPL90D). Identical to 60S ribosomal protein L9-2 (RPL9D) [Arabidopsis Thaliana] (GB:Q9SZX9); similar to 60S ribosomal protein L9 (RPL90B) [Arabidopsis thaliana] (TAIR:AT1G33120.1); similar to 60S ribosomal protein L9 (RPL90A/C) [Arabidopsis thaliana] (TAIR:AT1G33140.1); similar to unknown [Solanum tuberosum] (GB:ABA81856.1); contains InterPro domain Ribosomal protein L6; (InterPro:IPR000702); contains InterPro domain Ribosomal protein L6, conserved site-2; (InterPro:IPR002359) Range:  from: 6462949    to: 6464540    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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