Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  <---------At4g35610                                                                --------->At4g35610                                                              <---------RAP2.3(2)                                     <---------ANAC58         <---------DEAR3(1)                                     <---------ANAC46        <---------LBD16                                     <---------ANAC58       ------>ZmHOX2a(1)      --------->DEAR3(2)      <---------AHL20(2)            ================================HOX2a_HOX2a     ------->TEIL             --------->AHL20(2)           --------->TOE1(2)   <---------ZAT14           <---------AHL20(2)         --------->ARR11(3)  ----------->HVH21          --------->AHL20(2)         <---------ARR11(3) -------ANAC46            --------->ATHB12         ------->TEIL------>NtERF2                     ---- -----ANAC46             <---------YAB1 --------->ARR14(2)------>ZmHOX2a(2)                   <------ ---ZAT14                --------->ICU4 <---------ARR14(2)----------->RAV1(2)        <------ZmHOX2a(2) -->ZAT14 <---------ALFIN1----------->GT1          <-------TEIL<---------RAP2.3(1)  --------->ARR14(2)   gtgtgtgaaccggcactgtgaaccaagatgattaaattttcgtattctctatgtacatgatcctgcggctcaatcgcttcagtttcgatccacatgatgt  6407600                                                               <---------HSFC1(2)                                                               --------->ATHB12                           <---------HSFB2a(2)     <------ZmHOX2a(1)       <----------DOF2                           --------->HSFB2a(2)  --------->HSFB2a(2)      <---------------AGL15                          --------->REM1(2)     <---------HSFB2a(2)     <-----------------AGL2                       <---------ANAC46     ========================MYC_MYB<---------DAG2                   <---------HSFC1(2)       ==========================================bZIP_DOF                   --------->HSFB2a(1)      <---------O2       <---------HSFB2a(1)          <--------                   <---------HSFB2a(1)      --------->TGA1a   <---------YAB1           --------->ICU4 --->TEIL          --------->HSFC1(2)       --------->O2    <---------At4g35610 <---------ANAC46 ---- ---ANAC46   <---------ANAC46        <---------KAN4(2)      <-------GAMYB--------------->AGL15  <----   atatgttatagaattgtgggaaactccttgtagaaagagtatgttcacgtctaggactagtcggatgattcgtttctctttttggtgtaatgagtatgtt  6407700                               --------->WRKY12                               --------->WRKY38(1)                           <------------AtMYB77                         <---------ANAC46                           --------->MYB46(3)                        <---------MYB46(3)                         --------->MYB52(1)                        <---------MYB52(1)              <-                     --------->GLK1(2)                             <-------GAMYB                <----                     <---------ARR11(3)                       --------->GLK1(2)           <---------ZAT14 -KAN4(2)            <-----------ARR10        <-----------GT1--------->KAN4(2)--------->REM1(1) <---- ----->YAB1          --------->ARR11(3)    <---------------AtSPL3 --------->LBD16  <---------TOE2(3)< ---TEIL      ----------->GT1 <---------MYB52(1)<---------ANAC46<---------LBD16  --------->MYB52(1)--   cataactgttgatacaatgtgaaaatctaaccgttgagcttgggagttttacgtctatatgaaaattccggttgtcgtctacattacggtagtaaacagg  6407800   --------->At5g28300                                                               <---------GLK1(2) --------ALFIN1                                            <---------ANAC46          <---------ARR11(3) -----PCF5                  <-----------GT1                <---------ANAC58        <---------TOE2(3) --ZmHOX2a(1)        --------->ANAC46                      <---------ANAC58        ----------->ARR10 ---------ZAT14      --------->ANAC58                 ---------->DOF2      <-----------GT1 --------->RAV1(1)   --------->ANAC58          <------ZmHOX2a(1)   ----------->HVH21 --------->ARR11(3)   accacagtgattccaaatgtcccaaggaatttactgaaaaccccaactaggactgtgaaaggcttgtggatgacatttaacagttgagattttcatgtgt  6407900                                                                             --------->AHL20(2)                                                                             <---------AHL20(1)                                                                             --------->AHL20(1)                                                                             <---------AHL20(2)                                                                            --------->AHL20(2)                                                                            <---------AHL20(2)                                                   <----------ID1       --------->AHL20(2)         --                                              --------->ANAC46   --------->CCA1(2)                 >>                                            --------->ANAC58    <---------ARR14(2)               ----                                            --------->ANAC58    --------->ARR14(2)               ----          <-----------GT1                 ----------->RAV1(1)   --------->ARR11(3)              -----   --------->GLK1(2)            ---------->DOF2    ----------->GT1  ----------->GT1           -------  <---------GLK1(2)           ----------->HVH21 ---------->DOF2<------ZmHOX2a(1)      ----------->RAV1(1)   ttgagattcttgtaacacattttgctgtataggtgaaagcttagccacacaaaaggagaaacagaggatatggataaaataaattatccaacaaaaacca  6408000         --------->bZIP60(2)         --------->O2         --------->REM1(1)       ----------->RAV1(1)     --------->At4g35610    --------->ANAC46         --------->YAB1    --------->ANAC58        <---------ATHB12                               <---------ARR14(2)    --------->ANAC58       ------>MYB83                                    --------->ARR14(2)  =================bZIP_DOF------>MYB46(1)                                 --------->ARR11(3)       -  ---------->DOF2         --------->WOX13(1)                               <---------ARR11(3) ------- ------->TOE2(3)       --------->ANAC58                                --------->YAB1     ------>ZmHOX2a(1) >>>>>>>RAP2.2         --------->ANAC58                               <---------ATHB12--------->GLK1(2) -->MYB83--------->TGA1a--------->MYB46(3)                           ------>MYB46(1)  <---------ARR14(2) -->MYB46(1)         --------->MYB46(3)          <-----------GT1     ------>MYB83     --------->ARR14(2) ---->WOX13(1)--------->At4g35610 <------ZmHOX2a(1)                 --------->WOX13(1)------->TEIL  < ----->CBF  *TSS   --------->ANAC46       --------->YAB1  --------->WOX13(1)   ------>ZmHOX2a(1) <---   atctaaaagccacatcagcatccacaaccaatcagaggacagaatcatatttcacattttcaatccagaccaatcaaaatcctgaacgaatcctactctc  6408100                                                                                                    <                                                                                                    x                             ------>ZmHOX2a(1)                                                      -                <---------ANAC58                                                                  <--       <------ZmHOX2a(1)  ------>ZmHOX2a(1)                                                     <---- -------->TOE2(3) <---------CCA1(2)                                                             <---- -->ANAC46   --------->ARR14(2)                     ----------->GT1                             <---- ---------DAG2  <---------ANAC58                    <---------ZAT6                              <---- ------ALFIN1<---------ARR14(2) <----------DOF2  ------>ZmHOX2a(1)---------->DOF2      ---------->DOF2   caccttataggagcagtttcgtctcttcctccttctttcacttagctcttcctagtgttaaaccagagtaaagcttgaaactttggactaaaagaatggc  6408200                   <---------ANAC58                   <---------ANAC58           --------->ETT(1)                                        <---------MYB52(1)        --------->ALFIN1                                          <-------GAMYB      --------->ALFIN1                                       <---------ZAT2    <---------ANAC58  <------MYB46(1)                        --------->At4g35610    <---------ANAC58  <------MYB83                           <---------At4g35610    <---------ANAC46 --------------->AtSPL8             ------>ZmHOX2a(2) ----------DOF2   --------->ATHB12                     <------ZmHOX2a(2)                 <-------TEIL xxxxxxxxxxxxxxx>smallRNA(i)                          --------->ARR14(2)               ------->MYC2 -------------------->WRI1                            <---------ARR14(3)               <-------MYC2 ----NtERF2<---------ANAC46    --------->ANAC46       --------->ARR14(3)               <-------MYC3 -----ANAC58   --------->GLK1(1)                      <---------ARR11(3)               ------->MYC3 -----ANAC58  --------->ARR14(2)                      --------->ARR11(3)            <---------ALFIN1 -----RAP2.6(2)<---------GLK1(1)                      <---------ARR14(2)    --------->ANAC58     <--- -----ANAC46  <---------ARR14(2)           <---------ZAT18   --------->ZAT2 --------->ANAC58    <----   gtctttgggtgtgtcggaaatgcttggtactccccttaacttcagggcagtttcaagatcgtctgctccgttggcatcaagcccatccacgttcaagact  6408300                        <---------At4g35610                        <---------ZAT2                        --------->ZAT2                        --------->At4g35610                              <---------O2                       <---------ATERF1(1)                               --------->O2                   --------->ANAC58                                 --------->ANAC58                   --------->ANAC58                                 --------->ANAC58         --------->HSFB2a(2)                                     <---------At4g35610         <---------HSFB2a(2) ------>ZmHOX2a(1)                   --------->At4g35610 ----GAMYB        --------->DAG2                                 --------->ZAT2 -------RAV1(1)  ---------->DOF2 xxxxxxxxxxxxxxxx>smallRNA(s)<----------CDC5   gttgctctcttctctaagaaaaagccagctcctgctaagtccaaggctgtctctgagactagcgatgagctcgccaagtggtatggtatgtgtcttctaa  6408400                                                                                          -----------                                                                                     xxxxxxxxxxxxxxxx                <---------ANAC58                                                --------->HSFB2a(1)                <---------ANAC58                                                <---------HSFB2a(1)           --------->ATHB12                                                    <---------KAN4(2)           <--------HAHB4                                                   xxxxxxxxxxxxxxxxxxxxxxxxx           <---------ICU4                                                  <------ZmHOX2a(1)           --------->YAB1                                               <-----------RAV1(2)          <---------YAB1                                               <<<<<<<GRF7<-----------GT1 <--          --------->ICU4                                               xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        --------->YAB1                                               ----------->HVH21  <---------ANAC58       <---------YAB1                            <---------ICU4      ------>ZmHOX2a(1)  <---------ANAC58     --------->YAB1                             --------->ICU4   <---------ARR14(2) <---------ANAC58  <----------DOF2            <----------DOF2 <---------YAB1      --------->ARR14(2) <---------ANAC58   atcccttttataatcatttcttgctctgtttctttgtgaatgtgtttgtaattgtgactcttatgcaggtcctgacaggagaattttcttgcctgatggt  6408500  Previous    Next  AGI:  At4g10330.1    Description:  glycine-rich protein Range:  from: 6406537    to: 6407773    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g10340.1    Description:  LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5); chlorophyll binding. Identical to Chlorophyll a-b binding protein CP26, chloroplast precursor (LHCB5) [Arabidopsis Thaliana] (GB:Q9XF89;GB:Q8LAB1); similar to LHCB2.1 (Photosystem II light harvesting complex gene 2.1), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT2G05100.1); similar to LHCB2.2 (Photosystem II light harvesting complex gene 2.2), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT2G05070.1); similar to CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT1G29930.1); similar to chlorophyll a/b-binding protein CP26 in PS II [Brass Range:  from: 6408012    to: 6409673    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version