Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                <---------AtLEC2                                              --------->YAB1                                            <-----------GT1                                        <---------RVE1(1)                                        <---------CCA1(1)                                       --------->ARR11(3)                                       <---------ARR11(3)        ---------->DOF2               --------->YAB1   --------->TOE2(3)             --------->AHL20(2)  <<<<<<<<<ARR2                  <---------AHL20(2) <---------DAG2  <<<<<<<<<ARR1    <---------ATHB12 <---------TOE2(3)      ----------->GT1  ---------->DOF2 --------- --------GT1      --------->ANAC46 --------->YAB1   <----------DOF2    ----------->GT1   --------->WOX13(1)   tacaatcttataaagtttccaaacaatctctatattttaatgatattttcatgactttattttgtgaaacaaatggtagaaagtcataaaccaattacaa  6350500                                                                      <---------YAB1                                                                  <----------DOF2                                                           --------->AHL20(2)                                        --------->AHL20(2) <---------AHL20(2)    --------->AHL20(2)                 <---------WOX13(1) --------->AHL20(2)    <---------AHL20(2)              <---------AHL20(2) --------->AHL20(2)   <---------AHL20(2)               <---------YAB1     <---------AHL20(2)                       <----   <---------AHL20(1)       <----------DOF2            --------->AHL20(1)  --------->ICU4       <----   --------->AHL20(2)    --------->GLK1(2)            --------->AHL20(2)---------->DOF2         ----- >YAB1                  <---------GLK1(2)    --------->AHL20(2)   <---------DAG2          XXXXXXXXXXX   aacaatttaattcatctacaatagtagattcttttgttttaattgaataaaacaaaaaaaattaatgactttatgaaagtattaatccattaactccaga  6350600                                                                                     xxxxxxxxxxxxxxxx                                                                                  --------->YAB1                                                                                  <-----------GT1           <---------TOE2(3) --------->TOE2(3)                             <------------CBF      <---------ARR11(3)     --------->TOE1(3)                           <---------YAB1      --------->ARR11(3)   <---------ARR11(3)     <----------DOF2       --------->TOE2(3)    ----------->ARR10     <---------CCA1(2)       --------->TOE2(3)   --------->ARR11(3) -----ARR14(2)        <XXXXXXXXXXXXXXXXXXXXMIR1888--------->TOE1(3)   --------->GLK1(2) -----GLK1(2)         <-----------GT1   -------->HAHB4                <---------ARR11(3) ---->ARR14(2)    <----------DOF2       --------->YAB1               --------->CCA1(1)          ----- XXXXXXXXX>MIR1888<---------DAG2     --------->YAB1                  --------->RVE1(1)  <---------ARR11(3)   tttgtgaagattttagattacttttcacaaatcttaaactaataatacaaaactttaacaaatttttcaaaaaatcttattgaataacaacatattctac  6350700                                                                                                 ----                                                                                                 ----                                                                                                -----                                                                                                -----                                                                                               ------                                                                                               ------                                                                                          <---------ICU4                                          --------->AHL20(2)                             --------->ICU4                                     ------------>CBF                               --------->YAB1                               --------->YAB1                                       ----------->GT1        --------->ANAC46      <---------ATHB12                                  --------->ARR11(3) xxxxxx>smallRNA(se3)     --------->AHL20(2)                                ---------->DOF2  <------- ---->ANAC46              <---------AHL20(2)      <----------DOF2  <----------ID1 <------------CBF   ataacattttaagtcactaaaactctatttaaatcataaaccaataacatacctttagtatatatgttaacaacaaaacaaagaaattgtaattttgacc  6350800                                     ------>ZmHOX2a(2)                                    <------ZmHOX2a(2)                                   <---------AGP1                                   --------->ARR11(3)                                   --------->ARR14(2)                                   <---------ARR14(2)                                   <---------ARR11(3)      <-----------GT1             <---------CCA1(2)   <---------REM1(1)        <-----------TBP <-------GAMYB            <---------AHL20(2) -------->AtMYB77        --------->AHL20(1) ------->RAV1(1)         <---------AHL20(1) ------>HVH21           <---------AHL20(2) ---->DREB2C(2)       --------->AHL20(2)                                                   ---------- -->ZAP1             --------->AHL20(1)                  <---------At4g35610               --------->YAB1 --->DEAR3(2)        <---------AHL20(1)             <----------DOF2        <----------DOF2<---------YAB1 --WRKY18(1)        --------->AHL20(2)        --------->YAB1     --------->ZAT6      <---------TOE2(3)   gacagttgtaacttactcacaaatatatatatttgtagatctcataagtcataactttcatctccgaactctagtttctttggattcaaggtatcataaa  6350900                                                          <------MYB46(1)                                                      --------->ARR14(2)                                                      <---------ARR14(2)                                                     <------ZmHOX2a(1)                                                  --------->LBD16                                                 --------->LBD16                                                --------->HSFB2a(2)                 <---------ETT(1)                                            ------>ZmHOX2a(2)                       ----------->HVH21                                            ================HOX2a_HOX2a          --------->ARR14(2)                                           =================HOX2a_HOX2a          <---------ARR14(2)                                           <------ZmHOX2a(2)                   --------->HSFC1(2)                                          <---------ARR14(2)                   <---------HSFB2a(1)                                          --------->ARR11(3)                   <---------HSFC1(2)                                          <---------ARR11(3)         --------->CCA1(2)                                          <-----------ARR10         <---------ARR14(2)                                          --------->ARR14(3)        --------->ARR14(2)                                          <---------ARR14(3)        <---------ARR11(3)    <---------MYB52(1)                                          --------->ARR14(2)      ----------->ARR10--------->DEAR3(2)                                          <---------AGP1 --------->MYB59       --------->HSFB2a(1)             ---------->DOF2             <---------CCA1(2)<------MYB83   --------->ANAC46--------->At5g28300 ->GT1    <----------DOF2         --------->YAB1<---------HSFB2a(2) --------->ARR11(3)  ----------->GT1   aacctagtctgtctttaaagcttatgacgaagagaaacatagtagatcttcccgaggatttggtaatggagatactcgcgagggttccgaccgtaacttt  6351000                                                                    <---------ZAT14                                             --------->CCA1(2)      --------->ZAT14                              <---------HSFC1(2)                   <----------DOF2                              <---------HSFB2a(1)                  <---------DAG2                              <---------KAN4(1)                 <---------ALFIN1    <---------ZAT18                              --------->KAN4(1)             <---------At4g35610   --------->ANAC58                              --------->HSFC1(2)       --------->At4g35610        --------->ANAC58                              --------->HSFB2a(1)   --------->CCA1(2)         ------->TEIL                             <---------KAN4(2)     <---------ARR14(2)       <---------ZAT18                    ---------->DOF2    ------>ZmHOX2a(2)    --------->At4g35610   --------->ANAC46 --              --------->REM1(1)    <---------YAB1  --------->ARR14(2)       --------->ZAT18  <-------   ggtccgattacaatctacatccaaaagatggaacgttctgatcgaagataagagatttgctgagcagcactttactaatgcaccaaggcactctctgctt  6351100                                                                                                    <                                                                                                  ---                                                                                                -----                                                                                               <-----                                                                                              -------                                                                                              <------                                                                                              -------                                       ------>ZmHOX2a(2)                                      <------                                     --------->ARR11(3)                                       <------                                     <---------ARR11(3)                                       <------                          <---------ANAC46                                                ---------->DOF2                <---------TOE1(3)    <---------ARR14(2)                                 ----------->HVH21 ------->YAB1   <---------TOE2(3)    --------->ARR14(2)             --------->YAB1    ----------->RAV1(2) --At4g35610<----------DOF2        ----------->ARR10          ----------->GT1 <---------WRKY12-------   atcatgttgatgacctttagggtttatctcgtgagcgtcgatcttcatacaattcacaacaacaaggtaaacataataagtcaacttcgcctgaaagatc  6351200        --------->AHL20(2)        --------->AHL20(1)        <---------AHL20(2) ----------DOF2 --->ZmHOX2a(1) ->ZmHOX2a(2) -ZmHOX2a(2)                                                             <---------ETT(2) -->ARR14(2)                                                       --------->DEAR3(1) ---ARR14(3)                                                      --------->MYB46(3) -->ARR11(3)                                      ------>NtERF2  ------->TEIL ---ARR11(3)                                     <---------DEAR3(1)--------->AtMYB61 ---ARR14(2)                 --------->ANAC46   --------->ATERF1(1)<---------ALFIN1             ----- ---GLK1(2) --------->HSFB2a(2)          --------->ATHB12       --------->ANAC46                <---- -->ARR14(3)<---------HSFB2a(2)       <----------DOF2   --------------------->WRI1     <---------MYB52(1)   ctctttcaaattttttagaagaagttgatatatgcaacgtctttcattgcgacggcttcttgctatgcaccaccgtagacaatagactcgttgtttcgaa  6351300                                   <---------HSFB2a(1)                                   --------->HSFB2a(1)                                   --------->HSFC1(2)                                   <---------HSFC1(2)                                 <---------ARR11(3)                               --------->ANAC58                               --------->ANAC58                             ------->GAMYB              <---------AHL20(2)                            --------->MYB46(3)         <---------AHL20(1)         ----------->RAV1(1)                            <---------ATHB12           --------->AHL20(1)      --------->ANAC58                           ------>MYB83                <---------ARR11(3)      --------->ANAC58                           -------->P         <---------ARR11(3)               --------->AtLEC2                           ------>MYB46(1)  --------->ANAC46                <---------YAB1                        ------>ZmHOX2a(2)   --------->ANAC58              <---------ICU4                       <------ZmHOX2a(2)    --------->ANAC58              --------->YAB1 ---->ARR14(2)        --------->ARR14(2)<---------HSFB2a(2)              <---------ATHB12       <---- -----ARR14(2)        <---------ARR14(2)--------->HSFB2a(2)         --------->At5g28300         -----   tccctgttctcgtgatactaagtggatccaaccaagaaatttctacaagaaattcgatatatttgctctcggtaaatcatcatgcaacaagtacaaaatc  6351400  Previous    Next  AGI:  At4g10190.1    Description:  F-box family protein-related. Identical to Putative F-box protein At4g10190 [Arabidopsis Thaliana] (GB:O82622); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G21130.1); similar to S-locus F-box-like protein c [Petunia integrifolia subsp. inflata] (GB:ABX82528.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 6350924    to: 6352027    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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