Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               --------->WRKY12                                                             --------->WRKY45                                                           <----------DOF2                                                    <---------AHL20(2)                                                    --------->AHL20(2)                                                   --------->AHL20(2)                                                 --------->TOE2(3)                                                --------->ATHB12           <-----------GT1                                                --------->YAB1            <-----------GT1                                                <---------ICU4           --------->AHL20(2)                                               <---------ATHB12          <---------AHL20(2)          <---------AHL20(2)                   --------->ICU4--------->WRKY38(1)       --------->YAB1 ---->GLK1(2)    <----------DOF2              <---------ARR11(3)  ----------->GT1 --------->AHL20(2)   tctgaagactatattatttctttcaggcatattagctaattccagcaaaatcattaaattcctttgactagaaaattaaacattttaaatcatatacaaa  6335600                  --------->AHL20(2)                 --------->AHL20(2)                 <---------AHL20(2)          ----------->GT1       <---------ANAC58       <---------bZIP60(2)       <---------ANAC46                                                                           ---       <---------ANAC58                        -------->P               <----------DOF2           <--    ----------->HVH21                         ------->GAMYB  <---------WRKY18(1)              <------   <-----------HVH21           <---------YAB1--------->MYB46(3)      ------->TEIL         --------->MYB52(2)  --------->ALFIN1<---------AHL20(2)         <---------MYB111(2)    <---------CCA1(2)   <---------MYB52(1)   aaccgtgtgacttggtgaatttaattagtgactatgactcaatttcaacaacctcttgagtcttgaccttgtatcttttaaaaaactccccttagttgtc  6335700                                 --------->AHL20(2)                            <---------AHL20(2)                        --------->ATHB12                        --------->ATHB51                        <---------ICU4                        -------->ATHB1                                 <---------ARR11(3)                        --------->AHL20(2)                             --------->GLK1(2)                        <---------AHL20(2)                             --------->ARR11(3)                        <--------HAHB4                                --------->RVE1(1)                       <---------ATHB51                        ----------->GT1                       --------->ICU4        --------->TOE2(3) --------->ANAC58 ------>ANAC55(2)   <---------YAB1<---------AHL20(2)           --------->ANAC58                   <-- -------ANAC55(2)  ------------>CBF <------------CBF      <---------CCA1(2)        ---------->DOF2--- -----HVH21--------->ARR14(2)    <---------AHL20(2)     --------->YAB1--------->CCA1(1)           <--   acttaattgtccatatatacttacaattatttgatttaaattgacaacctctaattactcatatcaagaaaaaaatctctactcttaaagccatatttca  6335800             ------>ZmHOX2a(1)       <---------ANAC58                                                     --------->ANAC46       <---------ANAC58                     ==========================================bZIP_DOF    ---    ---------->ID1                          <---------DAG2                  --------->TGA1a       <--  <-----------RAV1(1)            <---------AHL20(2)       --------->ZAT6    --------->O2  <---------ARR11(1) -------ARR14(2)               <----------DOF2  <-----------GT1     <----------DOF2    --------->YAB1 ------>ARR11(3)              <-----------------AGL3    <-----------GT1    --------->SPL7<---------CCA1(2) -------GLK1(2)         <-----------GT1     <----------DOF2         ==================bZIP_DOF   <---   gattttgttgccttcctatttgatattttccttctttatttgatagctttttaccatataacacttgaaactttccctacgtctctctatcatatctata  6335900                                       --------->ANAC58                                       --------->ANAC58                                <---------ANAC55(2)                                <---------O2         --------->GLK1(2)      --------->O2                                                      <--        <---------GLK1(2)       --------->ANAC55(2)                                               <--        --------->ARR14(2)      --------->TGA1a  ---------->DOF2                                 <--- ------>ARR11(3)                ============================bZIP_DOF   <----------DOF2        <------ -------ARR11(3)   <----------DOF2----------->HVH21----------->GT1 <---------CCA1(2)         -------- ------CCA1(2)     =======================bZIP_DOF--------->DAG2   ---------->ID1     <---------ANAC46   tatcttgagagattctctattctttttttcagacaagtgacaaggaagacagaaagtgaaataagtcttgtctctttttttttttttggtgtggaatatt  6336000         <---------WOX13(1)                                          --------->ARR14(2)        <---------ANAC58                                           --------->LBD16        <---------ANAC58                                   ------->GAMYB           --------->TOE2(3) -------ANAC58                                           <---------At4g35610      <---------ANAC46 -------ANAC58                                           --------->At4g35610     <---------TOE2(3) ------MYB46(3)     <----------DOF2<---------ARR11(3)   --------->MYB52(1)      <-----------GT1 ------CBF----------->TGA1--------->MYB46(3)         --------->ANAC58<---------GLK1(2) ->KAN4(1)----------->HVH21        --------->ARR11(3)--------->ANAC58<---------ARR14(2)   ggttgagtttgagtgacgatgtctttcatcgacccaagaacttacattccatcgaactcaactgaatcccagatactgaaatttacgtttatcgtctgtg  6336100                                                                                                   --                                                                                                 ----                                                                                                -----                                                                                                -----                                                                        <------MYB46(1)       <------                                                                        <------MYB83          -------                                                                      <---------WOX13(1)   <---------ANAC58                <-----------GT1                                     <---------MYB46(3)     <---------ANAC58        <-----------HVH21                                           --------->ATHB12    <---------ANAC46  --------->ARR14(2)                                             --------->TOE2(3)      <---------ANAC58  --------->GLK1(2)              <----------DOF2   ---------->DOF2 <---------YAB1       <---------ANAC58  <---------ARR14(2)       ------>ZmHOX2a(1)<---------ANAC58   ------>MYB83            <------NtERF2- --------->WOX13(1)     ------>ZmHOX2a(1)   <---------ANAC58   ------>MYB46(1)       <---------RAP2.6(2)   tgccaatctgtgtcatattaatcgtcctcctcgttctttatatcatgcgtcgaaacagcaataccaacgttgattggtcttctcttggtggcttcgtgcc  6336200       <---------ICU4       --------->YAB1    --------->YAB1  ------>MYB83                                                                       --------->ATHB12  ------>MYB46(1)                                                                   <---------ATHB12 ----------->RAV1(1)                                                                --------->ICU4 ------->MYB46(3)                                                                   <---------YAB1 ----->ANAC46                                 <---------TOE2(3)                    <---------TOE2(3) ---->ZAT18                                   ---------->ID1                      --------->YAB1 ---->MYB46(3)                          --------->ARR11(3)                    <----------DOF2    ---- ---ZAT18              <-----------GT1  <---------ARR11(3)               <------MYB83<---------ICU4 < -->PCF2       --------->MYB52(1)       <---------GLK1(2)                <------MYB46(1)  <---------At4g35610 -------->AtMYB61 ------->GAMYB   <---------YAB1                        --------->MYB59   --------->At4g35610   caccaacaataatctctcaacggtattactcaatctatgaaagattttgtggtttttgaaacattttgatgtgtttggttcttttaatgatttgctgact  6336300                                                <---------ANAC58                         --------->CCA1(2)                                                <---------ANAC58                      --------->ANAC46                                               <---------HSFB2a(1)                  <---------DOF5.7(2)                                               --------->HSFC1(2)                  <---------WRKY38(1)                              ---------->DOF2  --------->HSFB2a(1)                 <---------WRKY12 ----->YAB1           <------ZmHOX2a(1)        <---------HSFC1(2)             <---------At5g28300 ---------ICU4      --------->MYB59         --------->CCA1(2)   <---------REM1(2)<-----------HVH21   catatttatgaacaggctgaattaggactgagcaaagacataagagagatgcttcccattgttatctacaaggagagtttcactgtcaacgatacacagt  6336400                                             <----------DOF2                                   <---------ARR14(2)                                   --------->ARR14(2)                                   >>>>>>>>>GATA-2                                   >>>>>>>>>GATA-3       <---------CCA1(2)                                   >>>>>>>>>GATA-1     <---------ANAC58                                   >>>>>>>>>GATA-4  <---------TOE2(3)                       <-----------GT1      ------>ZmHOX2a(2)                      <---------AHL20(2)   <------ZmHOX2a(2)                   <---------ARR11(3)     --------->ARR11(3)                   --------->ARR11(3) <-----------GT1  <---------ANAC58                        <-----               ---------->DOF2<---------ANAC46      <---------TOE1(3)                  <---------ATHB12            --------->YAB1 <----------DOF2<---------ARR11(3)                      >>>>>>>>>>>>>>>>>LFY   gagttctctcttattcataaagattttatcttttgtggattcacgatcttttttaaggcttatctcatgaaataaacttgttctctccaatgtttgatta  6336500  Previous    Next  AGI:  At4g10160.1    Description:  zinc finger (C3HC4-type RING finger) family protein. Identical to RING-H2 finger protein ATL4F (ATL4F) [Arabidopsis Thaliana] (GB:Q9SN27); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G10150.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44516.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 6336019    to: 6337328    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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