Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          ------>ZmHOX2a(1)      <---------GLK1(2)                               ------>ZmHOX2a(1)         <---------ARR11(3)                             ------>ZmHOX2a(2)           --------->ARR11(3)                             ==================HOX2a_HOX2a   <---------YAB1                            <------ZmHOX2a(2)            --------->ARR14(2)           <---------At4g35610                            ===================HOX2a_HOX2a --------->YAB1         ------>ZmHOX2a(1)                           --------->ARR14(2)            <---------ARR14(2)     ----------->RAV1(2)                           <---------ARR11(3)            --------->GLK1(2)    --------->ARR14(2)                           --------->ARR11(3)   --------->ALFIN1              <---------ARR14(2) ----->TOE2(3)             <---------ARR14(2)   <---------------AtSPL8   ------>ZmHOX2a(1) ------ARR10              <------ZmHOX2a(1)     <---------------AtSPL3  --------->TOE2(3)          <- ----ARR11(3)--------->At4g35610       --------->TOE2(3)<---------GLK1(2)<---------MYB52(1)      ----   cttattttcagactcatcagcatgaataggatcctgaacttcctcaacaagtggtacagaatcttgattctcttccttaggttcctgaagctgttcttcc  6299400                                <---------ARR14(2)                                --------->ARR14(2)       <------NtERF2                           ----                             <---------ANAC46     ---------->DOF2                          ------->GAMYB ---------DOF2           <---------ANAC58      ----------->RAV1(1)       ---------->DOF2  --------->MYB46(3) -->ZmHOX2a(1)           <---------ANAC58     --------->REM1(1)       --------->YAB1      <---------MYB52(2)   tcttttacctccattgaagacccattttcttgtgtattcccataatctacaacaaaggccgaagaacaacaatgagaaagactgatttatcaacaaactc  6299500                                                                  --------->ANAC58                                     --------->YAB1               --------->ANAC58        <----------DOF2             <---------YAB1                <----------ID1                    -  --------->GLK1(1)        --------->TOE1(3)        --------->TOE2(3)                               <  <---------GLK1(1)        --------->TOE2(3)        <----------DOF2   ---------->DOF2 --------->AtMYB61 ------>DOF2            --------->YAB1        --------->YAB1  --------->YAB1<-----------------------TaNAC69(2)   aaagaaatctctttttttgaaaactataaccatagaacatcataaaaatcaaaactttagtttataagaagccaaagagacagaaacacctaaaccatct  6299600                                                                               <---------At4g35610                                                                   <---------RVE1(1)                                                                --------->ANAC58                                                                --------->ANAC58    --------->REM1(1)                                           --------->ANAC46   <-------TEIL                                    <---------WOX13(1)          --------->At4g35610 -------->At4g35610         ----------->RAV1(2)  --------->ATHB12 <---------ARR11(3) ---------At4g35610 <---------TOE1(2) --------->GLK1(2)   --------->YAB1    ---------->DOF2     <----   tgagcttcatcttctagcttcgctcgtttagcctgagaagaatcagatgtttgattgctatcatccacgatatttccattaagctcaacttcgtcgagct  6299700                        <---------ZAT6                     <------NtERF2                   <---------ANAC46                  <------NtERF2                      <---------HSFB2a(2)                  --------->ATERF1(1)                --------->HSFB2a(2)                  --------->RAP2.3(1)              --------->At4g35610                 ------>NtERF2                     <---------At4g35610                 <---------ORA47(2)             <---------MYB52(1)                 <---------RAP2.3(1)           <-----------HVH21       <---------ANAC46                 <---------DEAR4(2)            <-----------TGA1      --------->LBD16              <--                <---------DEAR3(1)            --------->ANAC46      <---------DEAR3(1)            ---                <---------RAP2.3(3)  --------->ARR14(3)            --------->SPL7              <-----                <---------RAP2.3(2)  --------->GLK1(2)             <---------LBD16           --------         <---------ETT(2)            --------->ARR11(3)          <---------SPL7         --------->ZAT2         --------->ETT(2)            <---------ARR11(3)          <-----------HVH21      --------->At4g35610        <------ZmHOX2a(2)     <----------ID1------>ZmHOX2a(1)  --------->HSFB2a(1)      <---------At4g35610 <---------ANAC58<---------ATERF1(1) --------->ARR14(2)       <---------ARR14(2)        <---------ZAT2 <---------ANAC58<---------ERF1      <---------ARR14(3)       ------->TEIL <------ZmHOX2a(1) <------- ------DOF2 <-----------RAV1(2)      <-----------ARR10        --------->ARR14(2)     ---------->DOF2   ttcgcttgagatcgacaggcggcgtagagataacaacaaaatcttcctccgtcatctggaaacgaatcgtccggcgaggaatttagggaaagctgagtac  6299800                                                                                --------->TOE2(3)                                 --------->At5g28300                           <---------ANAC46                                ----------->GT1                              --------->MYB52(1)       <---------LBD16          *TSS ---------->DOF2              <---------MYB46(3)    --------->ALFIN1          <---------MYB52(1)    <---------ANAC58<---------ANAC46                < -------ZAT14                --------->LBD16        <---------ANAC58--------->ALFIN1        <-------- ------>ZAT14                ------>NtERF2       <--------P       --------->MYB55(2)      --------->DOF5.7(2) ----ZAT14                  --------->ANAC46    <---------ANAC58 --------->ALFIN1        <----------DOF2 ->ZAT14                   <---------LBD16      <-------GAMYB    <---------DEAR3(1)  <---------TOE2(3) --ZAT14               --------->ARR11(3)       <---------ANAC58 <---------AtMYB61   <---------TOE1(3)   tgtagggtttggggaagaagagaattatctccggcagtgaaaagagtttgggttgcgactctgaacggtggtggagaagtaacgtttaaggctttaacgt  6299900                                                                        --------->ICU4                                                                      <---------ICU4                                                                     --------->ICU4                                                                    --------->AHL20(1)                    <------------CBF                               --------->YAB1                  <---------YAB1                               --------->YAB1     --------->YAB1--------->ATHB12                     <---------TOE2(3)  --------->YAB1 <-----------TBP                        <---------TOE1(3)--------->YAB1         <---- -----------TBP <----------DOF2         -------->P     ---------->DOF2--------->YAB1       ------>ZmHOX2a(2) -DOF5.7(2)    <-----------------AGL3   --------->MYB52(1)    <---------YAB1      <----------DOF2   ctatttataatgttcgggcttttattgggcctaaaaatgggctaccagttttttttttaaagttatcaaaaataatgatgttttctttgttgatcgtcga  6300000                                                                                  <---------ZAT14                                                                                  --------->ZAT14  <-                                                                           <-----------GT1   <------- -----ANAC46                                  ----------->RAV1(1)     <----------DOF2 <---------AtMYB61   ggggatgttgttgagacgatagcttctactcaaattttgtagaatcgacaacatagtagaaatttgtagggtctttatttccattgtagtggttttatcg  6300100                                                                                      --------->ICU4-                       --------->YAB1                   --------->TOE2(3)             --------->GLK1(2)                      <---------YAB1                --------->GLK1(1)        <---------ANAC58  <----- ---------DOF2  ------>ZmHOX2a(1)                   <---------GLK1(1)        <---------ANAC58 ------- ----GT1     ------>ZmHOX2a(1)                   <---------ATHB12   ----------->RAV1(1)       <------   actttggactatgtcctcctctctataatagtttacaagcttgaaaccccaatgaaatccataacaaaacccacatatagcttatgaaattcttaagatc  6300200                                                                                              -------                                                                                              -------                   ----------->RAV1(2)                                                  <------MYB83                   ------>MYB46(1)                                           <---------ARR14(2)                   -------->P                                                ------->TEIL     -------                   ------>MYB83                                              --------->ARR14(2)                   --------->ZAT2                                           <---------CCA1(2) -------       ---------->DOF2    --------->GLK1(1)                             <---------ANAC46<------MYB46(1) -------->YAB1     <---------ZAT2                                     --------->ZAT14 <--------P -ZmHOX2a(2)     --------->MYB46(3)                                   <---------ZAT14 <---------MYB52(1) -->ARR11(3)<---------ANAC58                    ---------->DOF2<---------ATHB12      <-------GAMYB ---ARR11(3)<---------ANAC58<-----------GT1 <-------TEIL   --------->At5g28300      <---------MYB46(3)   aaacatagaaaaaggcttaccaactgggattttcagtctctgaacatacataaatcgctacggtaatcactctgcagtgtatcccacggttgggacacga  6300300  Previous    Next  AGI:  At4g10070.1    Description:  KH domain-containing protein. similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G33680.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16270.1); contains InterPro domain K Homology; (InterPro:IPR004087); contains InterPro domain K Homology, type 1; (InterPro:IPR004088) Range:  from: 6295604    to: 6299832    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g10080.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G13530.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44584.1) Range:  from: 6300054    to: 6302650    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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