Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         <-----------RAV1(1)                                                                      ------>ZmHOX2a(2)                                                                    <---------ARR14(2)                                                              <---------YAB1                                                             <----------DOF2                        <                                                            <---------ICU4     <---------YAB1      --           --------->ANAC58                            <---------YAB1<------ZmHOX2a(2)             --           --------->ANAC58      <---------YAB1     --------->ICU4  --------->AGP1              <----       --------->ZAT6        <----------DOF2        <---------YAB1  --------->ARR14(2)          <----    <------ZmHOX2a(1)        <---------DAG2       --------->CCA1(2) <---------AGP1---------->DOF2<--- ---->ZmHOX2a(1)          <-----------GT1        <---------ARR11(3) <---------ARR11(3)         <----- --At4g35610           ----------->GT1           --------->ARR11(3) --------->ARR11(3)        -------   cctcgaggaacactagcaatgtaagaagtaactttataaatgaaaaacagagatatgattaatctttatagatctgttgttatgaaaagcttacaagtgc  6259700      --------->ATHB12     <---------YAB1    --------->At5g28300 ---------ALFIN1                          --------->ANAC58 ------->MYB46(3)                         --------->ANAC58 ------->SPL7              --------->ANAC58 -----ANAC58        <---------ALFIN1      --------->ANAC46 -----ANAC58  --------->CCA1(2)         ------>ZmHOX2a(1) ------PCF2   <---------At4g35610<---------ANAC58        ----------->GT1 --TEIL <---------WOX13(1) --------->ANAC58   ---------->DOF2 -->ALFIN1    --------->At4g35610<---------ANAC58      <------ZmHOX2a(1)                 <----------DOF2   gtccaccgtgattgagagatgcccacatcaagctatcgtgtcctaagccaaagacgaggaagttacaaggagacttcttgtccaagactctctttgagac  6259800                             <---------GLK1(1)                            <---------ARR11(3)                            --------->ARR11(3)                        <---------ANAC46                        <---------ANAC58                        <---------ANAC58                     <---------AtMYB61            --------->MYB46(3)                <-------TEIL    -                 <-------GAMYB------>ZmHOX2a(2)--------->ZAT18                      --------->ZAT18<-                 =============================MYC_MYB                  --------->ALFIN1            <-                --------->MYB55(2)             <---------ZAT18       <---------O2<---------ANAC58 <--                <---------MYB46(3)    ----------->HVH21    <---------ANAC46      <---------ANAC58<---                --------->MYB52(2)  <---------TGA1a      <-----------HVH21       <------MYB46(1)<----                <-----------RAV1(1) <---------At4g35610 <---------ANAC58         <------MYB83<-------              <---------MYB52(1)    --------->At4g35610 <---------ANAC58--------->ZAT18      --------   tgagacttcatcaaacgtttgttgtggtgtgatctctgaggtgacatagtgaaccaatgcgtcggatagagaagtgggcaatttggtgcattgttgtggg  6259900     --------->ZAT18                         <-------GAMYB     <---------ZAT18                        <---------MYB46(3) -------->ATHB12                           <---------ANAC58 --------MYB46(3)                          <---------RAP2.6(2) --------AtMYB61                      --------->ATHB12                <----------DOF2 ------P                              <---------MYB46(3)       <---------ANAC58 ----GAMYB                      <---------HSFB2a(2)            <---------ANAC58 -----ANAC46           <---------ARR11(3)  <---------ANAC46   <---------HSFC1(2) --ANAC46              --------->ARR11(3)  <---------ANAC58   --------->HSFC1(2)                 <--- ->ALFIN1     <---------GLK1(1) --------->HSFB2a(2)          --------->GLK1(2)      <---------KAN4(2)   gttgatgggcacttcgatttctggtgatattcgtctcgaatggttgcggttgaattggaagagaagcttgctcttttcaagaagagaatgaacaacacca  6260000                                        <---------WOX13(1)                                      --------->ATHB12                                     <---------YAB1                                     --------->ICU4                       <----------DOF2<--------ATHB1               ------->TEIL      <---------YAB1        --------->MYB46(3)     --------->At4g35610        <---------MYB52(2)  <---------At4g35610                       *TSS         <---------ANAC58      ----------->RAV1(1)   --------->At4g35610                  <----------DOF2   <---------ANAC58 ------YAB1 <---------ATHB12<---------ZAT2            ------>ZmHOX2a(1)         <-----------GT1   agattgagcaacaaatgaatataagctttgagctgatgaatgattgggatttattcctcatgttttcctttctctctcggttttagcgttttcgatatgt  6260100                                                                                              ------>NtERF2                                                                                             --------                                                                                            <------NtERF2                                                                                            ---------                                                                                            ---------                                                                                           ------>NtERF2                                                                                           <---------ATERF1(1)                                                                                           <---------RAP2.3(1)                                                                                          <---------DEAR3(1)                                                                                          <---------ANAC46                                                                                          <---------RAP2.3(3)                                                                                       ----------->TGA1                                                                 <---------GLK1(2)   <---------bZIP60(1)                                                     ---------->DOF2 <---------HSFC1(1)----------->HVH21                                               ------->TEIL    --------->ICU4   <------ZmHOX2a(1)  <-                                             <-------TEIL      <---------YAB1 <---------TOE2(3)    <-                                  ----------->GT1 --------->TOE2(3)  <---------HSFB2a(2) --------->RAP2.6(3)      --------->YAB1             <---------MYB46(3)------>ZmHOX2a(1) --------->HSFB2a(2)--------->MYB52(1) ------------>CBF               <---------ANAC46  --------->TOE1(3) <---------LBD16  --------->bZIP60(1)   tttgacaatggtgaagatggtgagagatagtcttgtgggtgaatagatgcatccttaaagagagaatgattctggaagttgaggatgacatgacggcgac  6260200                              <-----------RAV1(1)                             ------>ZmHOX2a(2)                           <---------AGP1                           <---------ARR14(2)                           <---------ARR11(3)                           --------->ARR11(3)                           --------->ARR14(2)                      <---------MYB46(3)     <---------YAB1       <-------GAMYB  <------MYB83          --------->AHL20(2)  <---------WOX13(1)    <---------At4g35610  <---------MYB46(3) <---------AHL20(2)<--------ATHB1  <--------P          <------MYB46(1)       <---------AHL20(1)--------->ATHB12 ->DEAR3(1)          --------->MYB111(2)   --------->YAB1    --------->ICU4               --------->ATERF1(1) >ATERF1(1)          <---------MYB46(3)<---------AHL20(2)    <---------YAB1             <---------ANAC46 >RAP2.3(1)          --------->ALFIN1  --------->AHL20(2)<---------ATHB12            --------->ALFIN1 --------TOE1(3)     <---------AtMYB61 <---------YAB1<---------ZAT14                 <---------ANAC46 --------TOE2(3)     --------->MYB111(1)  <---------YAB1 --------->ICU4    ----------->HVH21   <-----   taaggttgctgttgaaccagaagttggtggatctgttgtatattattataatgtctgcaatgaatgattggaacgatgtgaaacgtagtgggggaggctt  6260300                           --------->GLK1(2)                          <---------ARR14(2)                          <---------ARR11(3)                          --------->ARR11(3)                          <---------GLK1(2)                          --------->ARR14(2)                         --------->HSFC1(2)                         <---------HSFB2a(1)                         --------->HSFB2a(1)                                                      <--                        ----------->ARR10                                                    --------              --------------->AGL15                                                          <-------             <---------ANAC58                                                          --------->TOE2(3)             <---------ANAC46                                                        <---------At5g28300             <---------ANAC58 <---------YAB1               ------->MYC3             <-----------GT1--  <---------YAB1 ---------->DOF2                           <-------MYC3          <---------ICU4  <--- -----DOF2 <---------YAB1<---------HSFC1(2)        ---------->DOF2         <-----------GT1   --------   tgttatcaaactgatgcttgaaagagaagattcttataccaaaacacaaaaaaaaaagacatgtgttttgtcttgatatacaatatttaccacaattata  6260400                                               ------>ZmHOX2a(1)                                            <------ZmHOX2a(2)                                           <---------ARR14(2)                                           --------->ARR14(2)                                           <---------GLK1(2)                                           --------->ARR11(3)                                           --------->AGP1 -----TEIL                                 --------->ARR14(3) ->AHL20(2)                                <---------ARR14(3) --AHL20(2)                  ------->TEIL  <---------ARR11(3) ------->ANAC46             <---------CCA1(2)------>ZmHOX2a(2)  --------->ICU4--------->HSFB2a(2) --------GT1            <---------ANAC46--------->HSFB2a(2)--------->ANAC55(2)<---------HSFB2a(2) ->YAB1          ---------->DOF2     ------->TEIL    <-----------HVH21     <----------DOF2          <   tacatcacaagttttaagagaaagggccttgtatctatgcatccagatcctgcattgtcatatgtaataagttgagtcttttagaaaacttccatacatt  6260500                                --------->ANAC46                                --------->ANAC58                              --------->HSFB2a(1)                              <---------HSFB2a(1)                             ---------->TaMYB80                             <---------KAN4(2)                        --------->YAB1                      --------->CCA1(2)                            ------>MYB46(1)        <----------DOF2------>ZmHOX2a(2)                           ------>MYB83   ------>ZmHOX2a(2)  <------ZmHOX2a(2)                          ------->GAMYB   <---------MYB59   --------->ARR14(3)                         --------->DEAR3(2)  <------ZmHOX2a(2)  <---------ARR11(3)                        ------>MYB46(1) --------->ARR14(2)  --------->ARR11(3)                        -------->P --------->ARR11(3)  --------->AGP1                            ------>MYB83 <-----------ARR10   <---------AGP1                            --------->MYB52(1) <---------AGP1      <---------ARR14(2)                       --------->MYB55(1)                 <--- --------->AGP1      --------->ARR14(2)       <-----------GT1<---------MYB46(2)             <-------- <---------ARR11(3)  <---------ARR14(3)   <---------ICU4     <---------MYB59                --------- <---------ARR14(2) --------->RVE1(1)    --------->ICU4      <---------MYB111(2)            <-------- ---------CCA1(2)---------->DOF2--------->ANAC58             <---------MYB111(1)   ---------->DOF2   tcagatctaactttctatctaaagatctgggaacatgccagtaatttttatcaacttgcgatacctaccgactcatcatatattcaaaagttcagatttt  6260600  Previous    Next  AGI:  At4g09990.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G33800.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16316.1); contains InterPro domain Protein of unknown function DUF579, plant (InterPro:IPR006514) Range:  from: 6258877    to: 6260070    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g10000.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G03880.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16313.1); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin fold (InterPro:IPR012335) Range:  from: 6260466    to: 6263153    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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