Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                    <                                       --------->ARR11(3)                                           -                                       --------->GLK1(2)                                           --                                       <---------ARR11(3)                                          <-                                      --------->RVE1(1)         <---------YAB1                 ------                                      --------->CCA1(1)        --------->AHL20(2)     ----------->GT1          --------->YAB1            --------->AHL20(2)         <---------AHL20(2)     <---------ANAC55(2)   <-----------GT1            <----------ID1   <---------ARR14(2)       <---------YAB1--------->ANAC55(2)  --------->AHL20(2)          <---------YAB1   --------->ARR14(2)       <---------AHL20(2)     <----- --->ANAC46    <----------DOF2<---------ANAC55(2)             --------->YAB1      --------->ARR11(3)-   actattaaacactcatactttgagtttggattacgaaaaaaaatcttcgaatatgagaaaactattaaaatagttttattgaaaaatcatgtaatattaa  6173300                                                                                               ------                                                                                               xxxxxx                                                                                              -------                                                                                              <------                                                                                             xxxxxxxx                                                                                            xxxxxxxxx                                                                                           xxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                        xxxxxxxxxxxxx                                                                              --------->AHL20(2)    x           <---------------AtSPL3                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <---------------AtSPL8      --------->AHL20(2)           --------->TOE2(3)  xxxxxxxxxxxxxx ---------AHL20(1)                   --------->AHL20(2)           <---------YAB1xxxxxxxxxxxxxxxxxxxxx ---------AHL20(2)                <---------AHL20(2)           --------->ARR11(3)      xxxxxxxxxxxxxx -------->AHL20(1)                --------->AHL20(1)           --------->AHL20(1)      xxxxxxxxxxxxxx ------->AHL20(2)            --------->AHL20(2)    --------->AHL20(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------AHL20(2)        --------->AHL20(1)        <---------AHL20(2)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --->AHL20(2)            <---------AHL20(1)----------->GT1     <---------ARR11(3)     <xxxxxxxxxxxxxx ----AHL20(2)    ----------->GT1  --------->AHL20(2)<---------AHL20(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -------->AHL20(2)      --------->AHL20(2) <---------ANAC55(2) <---------AHL20(1)     xxxxxxxxxxxxxxx   aataaatttagtaatagtacagataaatatataaaataaaataatatgtaaaattaaataagaaatatatcattaacctataaattagaagttgaagagc  6173400              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <---------AHL20(2)           --------->AHL20(2)           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <---------YAB1        --------->AHL20(1)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       --------->ATHB51       <---------ICU4       --------->AHL20(2)       <---------AHL20(2)      <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      --------->ICU4  <-------MYC3    --------->YAB1   <---------TGA1a   --------->AHL20(2)<---------O2   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   ---------->DOF2   <---------AHL20(2)--------->O2                       <---------ANAC55(2) --------->TOE2(3)   =================================================bZIP_DOF --->At4g35610<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     --------->ANAC46 xxxxxxxxxxxxxxxx>smallRNA(si3)                         --------->ANAC58 -->ARR11(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     --------->ANAC55(1) ---ARR11(3)<---------YAB1                              --------->ANAC58 xxxxxxxxxxxxxx>smallRNA(si3)                       --------->YAB1 xxxxxxxxxxxxx>smallRNA(i2)                        <---------ATHB12 xxxxxxxxxxxxx>smallRNA(le3)                  <-----------HVH21 xxxxxxxxxxxx>smallRNA(le3)                <---------bZIP60(2) xxxxxxxxxxxx>smallRNA(i2)                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       --------->RVE1(1) xxxxxxxxxxx>smallRNA(le3)              --------->ICU4 <---------LBD16          --------->AHL20(2) xxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)        <---------AHL20(1) xxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)              <---------AHL20(2) xxxxxxxx>smallRNA(le3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            --------->AHL20(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxx>smallRNA(i2)       --------->YAB1 xxxxxxxxx>smallRNA(i2)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        <---------YAB1 x>smallRNA(le3)     <xxxxxxxxxxxxxxxxsmallRNA(i)--------->WOX13(1)        <---------WOX13(1) xxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        --------->ATHB12 xxxxxxxxx>smallRNA(se3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <---------ICU4        ------ xxxxxxxxsmallRNA(si3)------->MYC3 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->ICU4       -------- xxxxxxxx>smallRNA(le3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <---------YAB1 --------->TOE2(3)   ttacattaattattttaatagacacatggcaaatgctaagtgatgatgtgtcaatcatacggaaagagttagccatgattaataaaatacctcaatgaca  6173500                                                        ---------->DOF2                                              ------->GAMYB                                 <--------                                           <-----------GT1    >>>>>>>>>>WRKY26              --------- <---------GLK1(2)               --------->LBD16  <---------DAG2<<<<<<<<<<WRKY26 <----------DOF2 --->ZAT6                        <---------LBD16  <----------DOF2                <---------DAG2 ->YAB1                <-----------HVH21--------->YAB1<---------YAB1          <-----------GT1   ctagaatttgaattctattaaactctgtcaaattccacggtttaataaccccctttataaaagttgatcaactctgatataaactttttgttatttatat  6173600                          <---------ICU4                         --------->AHL20(2)                       --------->YAB1                      <---------YAB1                     <---------AHL20(2)                     --------->AHL20(2)                  <---------AHL20(2)                                                               <-                  <---------AHL20(1)                                                               --                  --------->AHL20(1)                                                             ----                  --------->AHL20(2)                                                           ------               --------->AHL20(2)       ----------->GT1                      --------->ZAT6    ------               --------->YAB1    --------->YAB1                   <---------ICU4              <------ -AHL20(2)   --------->AHL20(2) <-------TEIL           <-----------GT1 <---------YAB1         ------- >AHL20(2)  --------->YAB1<---------AHL20(2)        <----------DOF2  <-----------GT1    ----------->GT1   aagtgttccatcgaaaataatattttaataaatattcatgaagggtaaaatggtctttaactatttcagtattacgataaccctactaatgtgtaatata  6173700     <------------CBF    --------->ATHB12    <---------ICU4    -------->ATHB1   <---------ATHB12 --------AHL20(2) ------->AHL20(2) ------->TBP                                                   <---------ANAC46 ----->TBP                                                     <---------ANAC58 --->AHL20(2)               <----------DOF2                    <---------ANAC58<<<<<<<<<TBF1 ---AHL20(1)       --------->ZAT2                    <------ZmHOX2a(2)--------->RAP2.6(3)       <---- -->AHL20(1)*TSS   --------->At4g35610 --------->ZAT14------>ZmHOX2a(2)<---------RAP2.6(2)  ---------   tataaatcattgaaaaaccctagcagacctcttttgtgttcttcactctccagcgatcgtttattgcttgaagacggcttcttcttctcacaaacctcat  6173800                                                                          --------->HSFB2a(2)                                                                          <---------HSFB2a(2) <------MYB46(1)                                                                         ------>ZmHOX2a(2)   --------                  --------->ICU4                                       --------->ARR14(2)    <-------       --------->YAB1<---------TOE2(3)                                 <---------AGP1 ----------->GT1      <---------------AGL15                                      --------->MYB46(3)   --------->YAB1      <---------ATHB12                                      <---------HSFB2a(2)  --------->AHL20(2)     <-----------------AGL1                                 <---------HSFC1(1)   <---------AHL20(2) <---------At4g35610 <---------TOE1(3)                      --------->HSFC1(1)  --------->YAB1<------MYB83 -----CCA1(2)--------->YAB1            <----------DOF2      --------->HSFB2a(2) --------->AHL20(2) >TOE2(3)    ----------->GT1       <-----------GT1--------->HSFB2a(2)  <---------ARR14(2)  --------->ICU4   ctctgctaatcaaaatggtaattagggttttcgaatttctcctttccctcttccaaaatgttctcgaacaatcgatctggaattaaaatggtaattaggt  6173900                       <---------ARR14(2)                                       <---------HSFB2a(2)                       --------->ARR14(2)                                       --------->HSFC1(1)                      <---------CCA1(2)                         <---------TOE1(3)                    <---------ANAC58                  <------MYB46(1)           --------->HSFB2a(2)                    <---------ANAC58                  ----------->GT1     --------->MYB52(2)                    --------->ANAC55(2)               <------MYB83      <---------MYB52(1)       <---      <-------TEIL  <---------ANAC55(2)              --------->MYB59  <---------ZAT6        <-------- ->MYB59 <---------CCA1(2)                       <---------ZAT6 <---------TOE2(3)           --------- --TOE2(3)         <-------TEIL            ------->TEIL         --------->MYB59<---------LBD16   <---   taactagattcatatattcgattcgtatccactctctgaaaaatgaatctagagataggtcaattttaggttgtgttagtttctggaatttagagttctt  6174000      ---------->DOF2   --------->AtLEC2 ------TOE2(2)                                                                                ------- -ARR11(3)                                                          <-----------GT1           <------ >ARR11(3) <-------TEIL                                           <---------WOX13(1)      ----------- ------TOE1(2)          <---------YAB1    ---------->DOF2      <---------YAB1    <---------ANAC46   atgttatgcaaagttcgtatttttctatgatttacattgagctagaaagttagagtttttatgttctgatttacaatgtaatcgcgagtaagttgataaa  6174100                                                                   --------->ZAT14                                                                   <---------ZAT14  <---------ANAC46                                                <---------ANAC46  <---------ANAC58                                            <---------ANAC58  <---------ANAC58                                           --------->ATHB12 ---------->ID1                                             <---------YAB1 -->AHL20(2)                                <---------WOX13(1)<---------ANAC58 ---AHL20(2)                          ----------->GT1    <---------MYB46(3)                       <-- >GT1                             --------->ATHB12    <-----------RAV1(1)     <--------P <------ZmHOX2a(1)   ttttgcgttttttttgtttagtttatgtgaaattactgatgggttaattgaattttgtgttgttgattgtgtagtctctggttgcaaatgaggagtttca  6174200  Previous    Next  AGI:  At4g09800.1    Description:  RPS18C (S18 RIBOSOMAL PROTEIN); structural constituent of ribosome. Identical to 40S ribosomal protein S18 (RPS18C) [Arabidopsis Thaliana] (GB:P34788;GB:Q94K22); similar to 40S ribosomal protein S18 (RPS18B) [Arabidopsis thaliana] (TAIR:AT1G34030.1); similar to PFL (POINTED FIRST LEAVES), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G22780.1); similar to unknown [Populus trichocarpa] (GB:ABK92692.1); contains InterPro domain Ribosomal protein S13-like, H2TH; (InterPro:IPR010979); contains InterPro domain Ribosomal protein S13; (InterPro:IPR001892) Range:  from: 6173712    to: 6175197    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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