Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    --------->ANAC58                  --------->ANAC58               --------->AHL20(2)               <------ZmHOX2a(2)                 <---------AHL20(2)              <-----------HVH21                  <---------AHL20(1)               ---------->DOF2    ----------->RAV1(1)                          --------->AHL20(1)        <---------CCA1(2)     <---   <----------ID1 --------->ANAC46         --------->TOE2(3)            <-------TEIL             <---  --------->DEAR3(2)                  <---------ARR11(3)     ----------->GT1  --------->TOE2(3)  <---   taaaaccgacaaaatcgatcacaccatgtataaattgctatatcatcttaataaaatgtgtgtttgtaaatatgttcataccttgaaagacagagtattg  6155500                                                                    <------ZmHOX2a(2)                                       --------->WOX13(1) ------>MYB83 ------>ZmHOX2a(1)       <---------YAB1             --------->At4g35610     ------>MYB46(1) ------ANAC46                     <---------At4g35610    ----------->RAV1(1)                      <-- ------ANAC58         <---------ARR11(3)         ---------->DOF2   <---------ARR14(2)        <------- ------ANAC58         --------->ARR11(3)     <---------AtLEC2      --------->ARR14(2)     <---------ARR11(3)   cttgttgttgtgattgtagatgaagaacttgagttcagcatcaatctgcatagaagcaccaacattttcgatcctcgcataaatcgaaacatggtctttt  6155600                                                     --------->ATHB12                                                 <---------AHL20(2)                                                 --------->AHL20(2)                      ----------->GT1        <---------AHL20(2)                     ----------->GT1         --------->AHL20(2)                     --------->LBD16        --------->AHL20(2)                    <---------ANAC46        <---------AHL20(2)                   <---------LBD16      <---------YAB1                  --------->ZAT2        ------>ZmHOX2a(1)           --------->ANAC55(1)            --            <----------DOF2             --------->ICU4              --------->YAB1                 <- -------ALFIN1    <---------ZAT2      ----------->RAV1(2)--------->YAB1     <---------ARR11(3)    --- ---DOF2 <-----------GT1         --------->WOX13(1) <---------YAB1  --------->ANAC46         <-------   ccaccttcttctaactttccagccgggtaaaatatcaatctcctgattaaatttatcattgataaatcacacataacaaatcttacataagagttatgaa  6155700          ------>ZmHOX2a(2)         <------ZmHOX2a(2)                                               <-------TEIL        <---------AGP1 <---------WRKY18(1)                              <--------P        <---------ARR11(3)                                           <---------TOE1(3)        --------->ARR11(3)                                           --------->DAG2        --------->AGP1--------->WRKY38(1)                            <---------TOE2(3) --------->AHL20(1)  <---------WOX13(1)                   --------->At4g35610 <---------AHL20(1) <-------GAMYB                         <---------At4g35610                       < ------->AHL20(1)  <------MYB83              <---------ALFIN1    --------->YAB1                     - --------AHL20(1)  <------MYB46(1)           --------->MYB52(1) <-------TEIL<---------YAB1--------->TOE2(3) ------>AHL20(2)  <---------AtMYB61         <---------ALFIN1  <---------ARR14(2)          --------->TOE1(3) --YAB1<---------CCA1(2)>>>>>>>>>WRKY6     --------->MYB46(3) --------->ARR14(2)       <-----------GT1   atatatattagatcttagatttggttgactataccatttatgtcccccaacgtcgaaatcagcagattcataaggttgatgactgaatttaacctcagag  6155800           --------->REM1(1)          <-------TEIL       --------->At4g35610       --------->ZAT2     ------->GAMYB    --------->MYB46(3)                                    <---------YAB1   ------>MYB83                                        <---------YAB1          <---------MYB46(3)   -------->P               <------ZmHOX2a(1)          --------->ICU4        <---------GLK1(2)   ------>MYB46(1)    <----------DOF2                --------->YAB1        --------->ICU4 --------->AtMYB61   <---------ANAC46                <---------ICU4        <---------YAB1         <-- ---------MYB52(2)   <---------ANAC58               --------->ICU4<----------DOF2      <---------ZAT14 -------->MYB46(3)   <---------ANAC58      <---------TOE1(3) ------->TEIL---------->DOF2      -------   aaaccaaccagcttcatcaagtagcttgaaggagcctcttctcttatggtttccatgatgatgaatttctttggataaagattgttgacttcagagttgt  6155900                               <---------ARR14(2)                ---------->DOF2                              <-----------TBP                  <---------AHL20(2)             -------                        --------->CCA1(2)                   --------->AHL20(1)                <------    <---------AtLEC2   --------->ARR14(2)                   <---------AHL20(1)           ------------  *TSS    --------->ANAC58  --------------->AGL15           <---------ARR11(3)    <----------DOF2   < -------AHL20(2)     ----------->ARR10   ---------->DOF2   <-----------TBP--------->ARR11(3)  <------ ---->GT1 --------->ANAC58  <---------------AGL15      ------------>CBF   <---------ARR11(3)  -------   ttatttgtatggaagccagaaatgagatttgcatatatagaagaaaagagaactaatagcaatatataaaagagaagacattttctttagaaacaataaa  6156000                                                                                      ------>ZmHOX2a(1)                                                                                     --------->TOE2(3)                                                                                     <---------ANAC58                                                                                     <---------ANAC58                                                                                <---------HSFB2a(1)                                                                                --------->ZAT2                                                                                <---------ZAT2                                                                                --------->HSFC1(2)                                                                                --------->HSFB2a(1)                                                                                <---------HSFC1(2) -->AHL20(1)                                                                    <---------At4g35610 ---AHL20(1)                                                                    --------->At4g35610 >CBF<---------ZAT14                                                         --------->LBD16 ---------YAB1       <---------DAG2         <---------TOE2(3)               --------->DEAR3(1) ---AHL20(2)         <----------DOF2        <---------TOE1(3)              --------->ANAC46 -->AHL20(2)  --------->ATHB12     <----------DOF2<-----------GT1        <---------ALFIN1 --------->YAB1   atatgactgaagagagtcattgactttttagacaagtctttgttttgaggttttacatgctagttttctgtatttccaccgcagcttccttatcgtgatg  6156100                                              <------ZmHOX2a(1)                                        =============HOX2a_HOX2a                                       <------ZmHOX2a(2)                                       ==============HOX2a_HOX2a                                      <---------ARR14(3)                                      --------->ARR11(3)                      <---------AHL20(1)                                      <---------ARR11(3)                      <---------ARR11(3)                                      --------->ARR14(2)                   <------ZmHOX2a(1)                                      <---------ARR14(2)                  ----------->GT1                                      --------->ARR14(3)                 <---------TOE2(3)                                      <-----------ARR10                 --------->YAB1                                     <------ZmHOX2a(1)            <---------WOX13(1)            --------->ANAC46     ---------->DOF2                --------->ATHB12    ---------->DOF2      ---------->DOF2------>ZmHOX2a(2)      <---------YAB1 --------->ARR11(3)   gagaccgaaagaatacaccattgatagaaaagactcaaaggatcttcaggatgggattcaagactgtgattgaataaggatatattttgggtttgttttt  6156200                                                                                                   --                                                                                                <----                                                                                               ------                                                                                               <-----                                                                                             --------                                                                                          <---------AHL20(2)                                                          <---------AHL20(2)             --------->AHL20(2)                            <----------DOF2               --------->AHL20(2)             <---------AHL20(2)                         --------->ARR11(3)         <---------ANAC58                  <---------AHL20(2)                         <---------ARR11(3)         <---------ANAC58                 <---------YAB1--                        <---------CCA1(2)           <---------ANAC46              <---------YAB1-----                      <---------AHL20(2)        <---------ICU4                  <---------AHL20(2)<--                      --------->AHL20(2)       --------->ICU4                  <---------YAB1<-------                <---------ANAC58               <---------YAB1            <---------AHL20(2) <--------                <---------ANAC58             --------->YAB1       <---------TOE2(3) <---------AHL20(2)   gaattttgaaaaatgtattcgtgtttaaatctttttttttttgtttgtcataattcgtgtttaaatctaatgttttaaatttttatttttatttattatt  6156300                                                                                                 ----                                                                                                <----                                                                                                <----                                                                                                -----                                                                                           <---------                                                                                      --------->LBD16                                                                                     <---------ANAC55(2)     <---------YAB1                                                               <xxxxxxxxxxxxxxxxsmallRNA(i)     --------->ICU4                                                              <---------At4g35610 ------->ATHB51                                                                <---------ZAT18  <---- -----ICU4                                                                     <---------WRKY12 ----- --->ICU4                                                       --------->ICU4 <---------WRKY38(1) ----YAB1                                                       <---------ATHB12 --------->At4g35610 ->YAB1                  --------->AHL20(2)                    <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ------->ATHB12          <---------AHL20(2)                 ------------>CBF   --------->ZAT14  ----- ---->YAB1              --------->YAB1                     ------->GAMYB     <xxxxxxxxxxxxxxxxsmallRNA(s) -------YAB1        <---------YAB1  --------->ANAC46    <-----------GT1      <-----------HVH21 <----- --ICU4             <---------AHL20(2)              <---------ZAT6   --------->ANAC46<---------ANAC46 -YAB1--------->ATHB12 <---------YAB1 <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)--------->MYB46(3)---------->DOF2   attattgattattgacacaaatattattaaaatcatttacgaaaaccgatactagttttaacagcaattatccacaaccagtcaactccgtaaaaggaac  6156400  Previous    Next  AGI:  At4g09770.1    Description:  meprin and TRAF homology domain-containing protein / MATH domain-containing protein. similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G09780.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63998.1); contains InterPro domain MATH (InterPro:IPR002083); contains InterPro domain TRAF-like (InterPro:IPR008974) Range:  from: 6154371    to: 6155902    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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