Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                    -                                                                                                    -                                                                                             <-------                                                                                             <-------            --------->ANAC58                                                                 <-------            --------->ANAC58                                 xxxxxxxxxxxxxxxx>smallRNA(i)    --------            --------->ANAC46                             <---------ANAC58                    <-------   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                  <---------ANAC58                   xxxxxxxxx --ANAC58<---------ZAT18                           <---------YAB1                     <---------WRKY18(1) --ANAC58--------->ZAT18                         ----------->GT1                 <---------TOE2(3) -- --ANAC46--------->ZAT14 ------->TEIL       --------->AHL20(2)              <----------DOF2 <--------   ttgtactattgttcactcaagtatatgtatatgaccataaaaaaaaaaaaatggttattgcctattggtcagttttttcttttaagtttgacccaaatct  6135800       ----------->GT1                    <---------AHL20(2)   --------->AHL20(2)                    --------->ARR11(3) ---------------AGL15                    <---------ARR11(3) -------->TOE2(3)                        <---------AHL20(1) -------------->AGL15                    --------->AHL20(1) --ARR11(1)                              --------->AHL20(2)                                    ------ ----ARR10                               <---------AHL20(2)                       <---------ICU4 --ARR14(2)                     --------->AHL20(1)                                --------->YAB1 ->ARR14(2)                     <---------AHL20(1)                               <---------ATHB12 --ARR11(3)      --------->TOE2(3)  --------->AHL20(2)                   <---------YAB1      <------- xxxxxxxxxxxxx>smallRNA(fl3)   --------->AHL20(2)      <----------DOF2 <--------HAHB4  <---------ANAC46 --------------->AGL3      --------->AHL20(2) <---------AHL20(2)      <---------YAB1--------->AtLEC2 -CCA1(2)<---------YAB1 --------->YAB1  --------->AHL20(2)--------->AHL20(2)   --------->WOX13(1)   >   ttccataaattgtgataaaacttaattcataaaatatataaaatatattttatatgtcttttaaatagaagtattattagttaatcatgcagtgtatcat  6135900                                      <---------AHL20(2)                                      --------->AHL20(2)                     <------ZmHOX2a(1)                                     --------->AHL20(2)                     <------MYB46(1)                                    <---------YAB1                          <------MYB83                                  <--------HAHB4                ----------->GT1                           ---------->DOF2              --------->ANAC46    <---------SPL7 --->WOX13(1)        <---------AHL20(2)                 --------->ANAC55(2) ----------->HVH21 --YAB1    <---------AHL20(2)    <---------YAB1       <-----------GT1     <--------P          ------- >>>>>>>>>>>>>>>>LFY --------->AHL20(2)   --------->AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   tcatccagtgtattatatgttttttaaataaaagtattattaaaaaaaatgtcattttacgagacatggttatatggtaggacgggtttcgatcgatatt  6136000                                                                                            <--------                                                                                        <---------AHL20(2)                                                                                        --------->AHL20(2)                                                            ------>ZmHOX2a(2)          --------->AHL20(2)                                                           <------ZmHOX2a(2)      <---------AHL20(2)                                     --------->MYB46(3)   <---------ARR11(3)      --------->AHL20(2)    --------->MYB52(1)<---------AHL20(2)              <-----------GT1            --------->AHL20(2) --------->ANAC46    --------->AHL20(2)  --------->YAB1   --------->ARR11(3) --------->AHL20(2) -->YAB1         <---------ZAT6    <-----------GT1  --------->YAB1           <---------AHL20(2)   aatacacaacgatatactagagataaaattgttgaattaacaatcgaaatacaattatacgatcttaaatactaaacaaaaaattaaaatttaaaaatta  6136100                                                                                                  ---                                                                                                -----                                           --------->TOE1(3)                                    -----                                           --------->TOE2(3)                            <---------YAB1                                           --------------->AGL15                   ------------------                                           <---------------AGL15                  ------>ZmHOX2a(2)<-                 <---------CCA1(2)        ----------------->AG                  --------->ARR14(2)<--                 --------->GLK1(1)        ----------------->AGL1                <---------AGP1  -----                ---------->TaMYB80        <-----------------AGL1                <---------ARR14(2)<--              <---------MYB52(1)        <-----------GT1              ---------->DOF2 <---------MYB52(1) -ICU4       ----------->GT1   --------->YAB1         ----------->RAV1(1)  <----------DOF2    -------   gtttaaaaaatcgaccggtatatccaaattcaaacataagttttaccttaatgggccaacatatgggccttaaaaggctttggatctgttactattacac  6136200 ------>ZAT14 ---->ANAC46 ---->ANAC58                                  *TSS ----->TaNAC69(2)       <<<<<<<<<TBF1      --------->ANAC46           <-----------GT1              -- --------ALFIN1      <<<<<<<<<TBF1        ------->GAMYB        ------>MYB46(1)                     <- -------ZAT18 ------>MYB83 <<<<<<<<<TBF1 <---------MYB52(2)    ------>MYB83                 ------>ZmHOX2a(1) ---->ANAC58  --------->ARR14(2)         --------->MYB46(3) --------->HSFB2a(1)          ------>ZmHOX2a(1) -------ZAT14 ------>MYB46(1)   --------->At4g35610         <---------HSFB2a(1)  ------->GAMYB ------ -->ZAT6      <---------ARR14(2)<---------At4g35610    --------->ANAC46      --------->MYB46(3)------   tccacttgcaaaaacctatcttcttcttcttcttcgctgaacaacaaacaacgcttcacaaaaccttccgataaacctcacaaccctcttcctcctcaca  6136300                      --------->ANAC58                      --------->ANAC58                    ---------->DOF2                  --------->ANAC58                  --------->ANAC58                 --------->LBD16                <<<<<<<<<ARR2                --------->ANAC46                <<<<<<<<<ARR1               <-------MYC3        --------->At4g35610   <---------CCA1(2)               ------->MYC3      <------ZmHOX2a(1) ------>ZmHOX2a(1)               <-------MYC2<---------YAB1       <<<<<<<<<ARR1 ------->ZAT14 ------->MYC2<---------TOE2(3) <---------KAN4(1) --------ZAT14--------->ANAC46  <------MYB83 --------->KAN4(1)      --------->At4g35610             - --->ANAC46   --------->ANAC58  <------MYB46(1) <<<<<<<<<ARR2     --------->YAB1  <---------DAG2  <-- --->ZAT6     --------->ANAC58<--------P--------->HSFB2a(2) --------->ZAT6     <-----------GT1   ----   ctacagtaagaaaaacacgcgcgaaagctatggtaggagcttcaagaacaatcctatccctatctctatcatcttccctcttcaccttctccaaaatccc  6136400                                                                      --------->LBD16                                                                      ------>NtERF2                                                                      <------NtERF2                                                                     --------->ANAC58                                                                     --------->ANAC46                                                                     --------->ANAC58                                                                     --------->RAP2.3(3)                                                                     --------->RRTF1(3)                                                                     --------->RRTF1(2)                                                                     --------->RAP2.3(2)                                                                     --------->RAP2.6(2)                                                                     --------->DEAR3(1)                                                                    --------->RRTF1(1)                                                                    <------NtERF2                                                                    --------->RAP2.3(1)                                                                    --------->ERF1                                                                    --------->ATERF1(1)                                                                   --------->ABI4(1)                                                                   ------>NtERF2                                                                   <---------ATERF1(1)                                                                  --------->RAP2.6(2)                                                                  --------->ANAC46                                                                  --------->RAP2.3(2)                                                                  --------->RAP2.3(3)                                                                  --------->RRTF1(2)                                                                  --------->ATERF1(2)                                                                  <---------ALFIN1                                                                  --------->RRTF1(3)                                                                  <---------DEAR3(1)                                                                  --------->DEAR3(1)                                                                  <---------ATERF1(2)                                                                 --------->DEAR4(2)                                                                 --------->ATERF1(1)                                                                 --------->RRTF1(1)                                                                 --------->ERF1                                                                --------->LBD16                                                                --------->ABI4(1)                                                 <---------ANAC58--------->RAP2.3(1)                                                 <---------ANAC58--------->ORA47(2)                                            <<<<<<<<CAMTA3      <---------At4g35610                                           <-------MYC3         --------->At4g35610                 ------>NtERF2             ------->MYC3         ------>NtERF2                 <---------ATERF1(1)      --------->ANAC58      <---------ATERF1(1)       ------>NtERF2                --------->DEAR3(1)        --------->ANAC46     --------->DEAR3(1)        --------->DEAR3(1)             <-----------GT1            <---------ALFIN1       --------->ANAC46          ----------->HVH21      <-----------GT1    --------->AtMYB61--------->ANAC58    <---------LBD16          ------>NtERF2     <-----------GT1------>NtERF2<---------ARR14(2)      --------->ZAT14              --------->DEAR3(1) -------->ANAC55(2)--------->DEAR3(1)  --------->ANAC46 <----------DOF2   --------->MYB46(3) -------ALFIN1  --------->ANAC46 --------->ARR14(2)   ------>ZmHOX2a(1) ----------->RAV1(1) ------->HVH21 <---------LBD16   <---------GLK1(2) ---------->ID1--------->RAP2.6(1)  ----------->HVH21   tcacgtttttccatttctccgcctccacaaacccagattccaccacgcgtttcgtcctctttactccgccgccgcaacaacttcttctccgacgacggag  6136500                 <------ZmHOX2a(2)              --------->LBD16            ------>ZmHOX2a(2)            <---------LBD16           --------->CCA1(2)           --------->ARR14(1)           <------ZmHOX2a(2)                                                               ------->GAMYB          --------->AGP1                                                             --------->AtMYB61          --------->ARR14(2)                                                         <---------ALFIN1          --------->ARR11(3)       ------>ZmHOX2a(2)                              --------->AtMYB61          --------->ARR11(1)      <------ZmHOX2a(2)                              --------->MYB46(3)          <---------GLK1(2)      <---------ARR11(3)                            --------->ARR14(2)          <---------ARR14(2)     --------->ARR11(3)                            <---------ARR14(2)     <-----------GT1        --------->TOE2(2)                              --------->At4g35610 <---------TOE2(3)          --------->TOE1(2)                          --------->GLK1(2)----------->RAV1(1)   actaatgttacagatccggatcaattgaaacatacgatcttactagagaggcttaggcttcgacatttgaaagaatcagcgaaaccaccacaacagagac  6136600              <---------ZAT14             <---------REM1(1)             <---------ANAC46           <------MYB83           <------MYB46(1)                                          <---------LBD16          <---------AtMYB61                             <-------GAMYB  <------ZmHOX2a(1)       <---------MYB46(3)                              --------->MYB52(2)       <-----------RAV1(1)     <---------ZAT6       ------------>MYB.PH3(2)    <-----------RAV1(1)    <---------ZAT14  ----------->GT1    <---------KAN4(2)    <---------ZAT6  <------ZmHOX2a(1)<------ZmHOX2a(1) --------->MYB46(2)    <---------ANAC46 -------   caagtagtgttgttggtgtagaggaagagagtagtattaggaagaagagtaagaagttagttgagaattttcaggaattgggtttaagtgaagaagttat  6136700  Previous    Next  AGI:  At4g09730.1    Description:  DEAD/DEAH box helicase, putative. Identical to DEAD-box ATP-dependent RNA helicase 39 (RH39) [Arabidopsis Thaliana] (GB:Q56X76;GB:Q682L4;GB:Q6NQ85;GB:Q9SZ89); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT3G06980.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67524.1); similar to Os01g0184500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042234.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR01400 Range:  from: 6136246    to: 6139708    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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