Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               <---------RVE1(1)                                                  <---------AHL20(2)                                                 --------->AHL20(1)                                                 --------->AHL20(2)                                                 <---------AHL20(1)                          <---------YAB1         <---------AHL20(2)                    <-----------HVH21           --------->AHL20(2)  --------->ZAT6            ------>MYB83  <---------AHL20(2) --------->AHL20(2)  <-----------GT1            ------>MYB46(1)          --------->TOE2(3)      <---------ARR11(3)          --------->TOE2(2)          --------->YAB1         <---------GLK1(2)                 -------          --------->TOE1(2)         <-------TEIL<---------AHL20(2)<-----------GT1         <------ZmHOX2a(1)    ------>ZmHOX2a(1)    --------->AHL20(2)--------->TOE2(3)--------->ARR11(3)           <----------ID1   agtctcctaaaacctactaatgtgtcatataatagacatccataacataaattaattttagagatttttaacactcgtttagttgaaaaataggactaat  6100300                                                               --------->ARR11(3)                                                               <---------ARR11(3)                                                              --------->CCA1(1)  --------->AHL20(2)                                                            --------->AHL20(2) ------>ZmHOX2a(1)                                                            --------->YAB1   ------>ZmHOX2a(2)                                              --------->ARR11(3)      --------->ATHB51       --------                                              <---------AHL20(2)      <---------ICU4         <-------                                              --------->AHL20(1)      --------->ATHB12 <---------HSFB2a(2)                                              <---------AHL20(1)     --------->ICU4  --------->YAB1 ----------->GT1              --------->AHL20(2)  ----------->GT1    <---------YAB1 <---------YAB1 -->YAB1              <---------TOE2(3)    --------->AHL20(2) --------->RVE1(1)<----------DOF2   aagaggtataatttgaagaggtttaagaaaaaaaaaatgttcacataaaatattgtaagaaataatatctcattattgatccttttattatagaagattt  6100400                                                                  --------->CCA1(2)                                                              <---------TOE1(3)                                                      <---------MYB52(1)                            <                                                     ------>ZmHOX2a(1)                        <------                                                     <----------DOF2                         --------                                                 <---------ARR14(2)                         ---------                                    <----------ID1  --------->TOE2(3)                ----------->HVH21                                ---------->DOF2  --------->ARR14(2)          <---------AHL20(2)     - ->ARR11(3)         <---------At4g35610      <------ZmHOX2a(2)<---------TOE2(3)<---------AHL20(2)  <- --ARR11(3)         --------->At4g35610      ===============HOX2a_HOX2a      --------->AHL20(2)   <--   tagtttagcaaaactctattttagcagaacacataaaaggaacaaggatcaaatcctttatgttatggatataactaatataaatttgtgacataaaaat  6100500                                                                     --------->ALFIN1                                                                    ------->MYC4                                                                    <-------MYC4                                                                    <-------PIF5                                                                    ------->PIF5                                                                    <-------MYC2                                                                    <-------MYC3                                                                    ------->MYC3                                           --------->GLK1(1)       <---------TGA1a                                           <---------GLK1(1)       --------->ANAC46                                <---------------AtSPL8             --------->O2 ------ZmHOX2a(1)         <---------------AGL15       <---------ATHB12 ---ICU4           ------>ZmHOX2a(1)      --------->ARR11(3)       --------->ANAC55(2)         ------ ->ICU4  --------->YAB1   --------------->AGL15      ------>MYB46(1)------->MYC2<---------ALFIN1 >AHL20(2)         <----------DOF2<------ZmHOX2a(1)  ------>MYB83  <---------O2------>ZmHOX2a(1) -------->YAB1--------->GLK1(1) <---------TOE2(3)   --------->WOX13(1)     --------->ARR14(2) ------- --------YAB1 <---------GLK1(1)--------->YAB1   --------->ANAC46   --------->TGA1a       --------->HSFB2a(2) -------TOE2(3)   --------->TOE2(3)       <---------ARR11(3)     <---------ALFIN1     ------>ZmHOX2a(1)   taggataacaagaatgaaatcctttaaactcaataaggaacacagatatcacaccaatcaaacaactccacgtgtcgattcctcactccttctcaaacca  6100600                                                                       <---------ARR11(3)                                                            ------->GAMYB                      --------->ANAC46                      --------->TOE2(3)   --------->ORA47(1)           --------->HSFB2a(2)                             --------->MYB46(3)  --------->DEAR3(1)           <---------HSFB2a(2) <-----------GT1         <---------MYB52(2)   <---------ALFIN1        ------>ZmHOX2a(1)   <---------ARR11(3)   --------->ORA47(1)    --------->ARR11(3)        ---- --->AtMYB61          --------->ANAC58          --------->DEAR3(1)     <-----------ARR10   --------->At4g35610 -->MYB46(3)          --------->ANAC58       <---------ALFIN1         <---------GLK1(2)    <---------At4g35610   cagcctaatccttctgaaaactccacacaagataaaccttctaatctccaccgtccatctaaccacaatccaaaatctccaccgtccattctcatctccc  6100700                                                                                                  <--                                                                                                  <--                                                                                                <----                      <<<<<<<<<TBF1          <---------HSFB2a(2)                                <----      --------->TOE1(3)                      --------->HSFB2a(2)                                <----      --------->TOE2(3)     ------>ZmHOX2a(1)<---------HSFC1(1)                         ----------->RAV1(1)   <-----------GT1 <<<<<<<<<TBF1        *TSS --------->HSFC1(1) <----------DOF2         xxxxxxxxxxxxx ----->LBD16    <<<<<<<<<TBF1    ------>ZmHOX2a(1)  --------->TOE2(3)               --------->MYB46(3)   ccaaaaaaccttaccttcttcttcttcttcctctcctctatcgtcttcgagaaaccacaaatctctctttctctcaaactctctcaacaacaacaatggc  6100800                                                                 ------>ZmHOX2a(2)                                                                <---------GLK1(1)                                                                <------ZmHOX2a(2)                                                                --------->GLK1(1)                                                               <---------ARR14(2)                                                 ======================HOX2a_HOX2a                                                 =======================HOX2a_HOX2a                                                 ------>ZmHOX2a(1)     <---------ALFIN1                                           ------>MYB46(1)     --------->AGP1        ------->GAMYB                      ------>MYB83        <---------AGP1       <---------MYB52(2)                --------->AtMYB61     <-----------ARR10           <---------ARR14(2)       --------->MYB46(3)                <---------ALFIN1      --------->ARR11(3)          --------->ARR14(2) -------CCA1(2)                         --------->MYB46(3)     --------->ARR14(2)     ------>MYB46(1) ----NtERF2                           <---------ALFIN1        <---------CCA1(2)       ------>MYB83 -----ANAC58                          --------->ANAC46 --------->ARR14(2)    --------->LBD16 -----ANAC58      <XXXXXXXXXXXXXXXXXXXXMIR159B------>ZmHOX2a(1)<---------ARR11(3)   --------->AtMYB61 -----ANAC46      <XXXXXXXXXXXXXXXXXXXXMIR159A==========================HOX2a_HOX2a<---------HSFB2a(1) xxx>smallRNA(se3)<XXXXXXXXXXXXXXXXXXXXMIR159C=========================HOX2a_HOX2a --------->HSFB2a(1)   gtctcttcaacaaactctattctctcttcaatccaaactcccaccatcctccttccaaatcgccagatctctcccactccgaaaaaccttcccaatccga  6100900                      <------NtERF2                   <---------LBD16                   <------NtERF2                   --------->RAP2.3(1)                  ------>NtERF2                  <---------ATERF1(1)                  --------->ABI4(1)                 --------->RAP2.3(3)                 <---------DEAR3(1)                 --------->DEAR3(1)                 --------->RAP2.3(2)                 <---------ATERF1(2)         --------->At4g35610                --------->RAP2.3(1)         ----------->RAV1(1)                --------->DEAR4(2)        --------->LBD16                         ---------->DOF2                --------->RRTF1(1)       --------->DEAR3(1)                   --------->HSFB2a(2)                --------->ATERF1(1)     <------NtERF2                         <---------HSFB2a(2)                --------->ERF1         ------>NtERF2                      --------->O2                --------->ORA47(2)   --------->MYB46(3)                   ===================bZIP_DOF              --------->ANAC46       <---------MYB55(2) --------->ANAC55(2)<-----------HVH21              --------->ANAC58      --------->At4g35610 --------->ANAC58  <---------O2 --------->MYB52(1)              --------->ANAC58     --------->ANAC46--------->ANAC46       --------->TGA1a           --------->ARR14(2)   <-----------HVH21  --------->ANAC58  --------->At4g35610 --------->ANAC58           <---------ARR14(2)<---------GLK1(2)     --------->ANAC58  <---------At4g35610 --------->ANAC46      ------->GAMYB--------->ATERF1(1)--------->DEAR3(1)--------->ANAC58  <---------TGA1a--------->ANAC58   --------->MYB52(1)--------->LBD16<---------At4g35610 --------->ANAC46  ===========================  --------->MYB46(3)--------->DEAR3(1)<---------ALFIN1--------->CCA1(2)   --------->ANAC46  <<<<<<<<<   atcaacaacggtggaaacgccgccggagcaagaatgtcagccaccgcagcatcaagctacgcgatggcattagcagacgtcgcgaaaagaaacgacacaa  6101000                                                                                     --------->DEAR3(1)                                                                                   <---------At5g28300                                                                                  --------->YAB1                                                    --------->ANAC58             --------->MYB46(3)                                                    --------->ANAC58           --------->YAB1        <-----------HVH21                     <------ZmHOX2a(2)                --------->WOX13(1)       ------->GAMYB                          --------->CCA1(2)               --------->MYB46(3)   <-      --------->ZAT6                         <---------ARR14(2)         --------->GLK1(2)--------->HSFB2a(2)    --------->MYB52(1)                       --------->AGP1             <---------ARR14(2)        ---    <-----------GT1 --------->HSFB2a(2)      --------->ARR11(3)         --------->ARR14(2)        --- ==============MYC_MYB  --------->GLK1(2)    --------->ARR14(2)     --------->HSFB2a(2)  <---------HSFB2a(2) <<<<<<<<LFY        <---------HSFB2a(2)     --------->At4g35610     <---------HSFB2a(2) <---------ETT(2)   tggaattaacagtcacagacatcgagaagctcgaacaagtcttctcagatccacaagtactaaacttcttcgcgaatccaacaatcaccgtcgagaagaa  6101100                                                                                                -----                                                                                               ------                                                                                      <------ZmHOX2a(2)                                                                                --------->GLK1(2)                                                                                <---------ARR14(2)                                                                                --------->ARR14(2)<--             ------>NtERF2                                              <---------DEAR3(1)     ------             ----------->RAV1(1)                                        --------->DEAR3(1)   <-------            --------->ANAC46                                          <-----------HVH21      <-------   --------->ANAC58                                                 ------>ZmHOX2a(1) ===============   --------->ANAC58                                        ==================================HOX2a_HOX2a ----------HVH21                                           ------>ZmHOX2a(1)------>NtERF2  --------->ARR11(3) ------>ANAC58                 <---------CCA1(2)          --------->TOE2(3)--------->ANAC46<---------ARR11(3) ------>ANAC58    ----------->GT1            <---------ALFIN1       =========================HOX2a_HOX2a   acgtcaagtcatcgacgacatagtgaaatcgtcgtctcttcaatctcacacatctaacttcctcaacgtcctcgtcgacgcgaatcggatcaatatcgtg  6101200  Previous    Next  AGI:  At4g09649.1    Description:  unknown protein Range:  from: 6100558    to: 6100695    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g09650.1    Description:  ATP synthase delta chain, chloroplast, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative. similar to ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative [Arabidopsis thaliana] (TAIR:AT5G13450.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64639.1); contains InterPro domain ATPase, F1 complex, OSCP/delta subunit; (InterPro:IPR000711) Range:  from: 6100740    to: 6101705    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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