Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      x                                                                                                    x                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                   ==                                                                                                   --                                                                                                   ==                                                                                                   <-                                                                                                  xxx                                                                                            <xxxxxxxx                                                                                            ---------                                                                                            xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxx>smallRNA(s)                                                         --------->ARR14(2)        <xxxxxxxxxxxxxxxxsmallRNA(i)                                                         <---------ARR14(2)     --------->ZAT2    xxx                                --------->ALFIN1---------->DOF2                 <---------ZAT2 <xxxxx                              --------->ALFIN1----------->HVH21                 <---------At4g35610--                              <-----------RAV1(1)       <------ZmHOX2a(1)       --------->At4g35610--                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       =================================                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <-------GAMYB <xxxxxxxxxxxxxxxxsmallRNA(s)                    <---------ANAC46         --------->At5g28300   <-----------RAV1(1) ---------->DOF2         <---------GLK1(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)    xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxx ----------->HVH21 <---------LBD16xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------YAB1 ==============   gaagtgactcagattttagttttcgggtttaagtgtgggagaaactcggtgaaagagaggattcgaagtctgttgtgattcgagctgactaaagtcataa  6067500         <---------At4g35610         --------->ZAT2         <---------ZAT2         --------->At4g35610       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <---------ANAC58     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <xxxxxxxxxxxxxxxxsmallRNA(s)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->ALFIN1 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -----------HVH21 ------>MYC2 -------MYC3 ------>MYC3 -------MYC2 xxxxxxxxxxxxxxxx>smallRNA(s) --------TGA1a ------->TGA1a --------O2 <xxxxxxxxxxxxxxxxsmallRNA(i) ==========================bZIP_DOF ------->O2<xxxxxxxxxxxxxxxxsmallRNA(s) ==========================bZIP_DOF --------ANAC55(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxsmallRNA(le3)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) >YAB1<---------ANAC58                          <----------DOF2 xxxxxxxxxxxxx>smallRNA(i2)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxsmallRNA(le3)                <---------AtMYB61 xxxxxxxxxxxxxxsmallRNA(le3)             --------------------->WRI1 xxxxxxxxxxxxxsmallRNA(si3)            <----------DOF2 xxxxxxxxxxxxsmallRNA(se3)             xxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxsmallRNA(si3)    xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxsmallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) xxxxxxxxxxxsmallRNA(si3)   xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------ANAC58 xxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------ANAC58     --------->At4g35610    <<<<<<<<<TBF1 ------->ANAC46           xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               <<<<<<<<<TBF1 ------->ANAC55(2)    <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            --------->ARR14(2) ========MYC_MYB---------->DOF2  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------ARR11(3) xxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)          --------->ARR11(3)         <- ========bZIP_DOF    --------->YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------CCA1(2)         <---   cacgtgaggcgagctgactaaagtcataacaagcttgagggcgttttggtcttttcgcatgagctctgtaactatatcttcttcttcttctctgtaattc  6067600                                                      ---------->DOF2                                                <---------ZAT6                                            <---------ZAT14                                            --------->ZAT18     ------>ZmHOX2a(2)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------LBD16                     <---------ANAC46   --------->ARR14(2)       ---------->DOF2 --------->ZAT14   <---------ARR14(2)     =====================HOX2a_HOX2a                                      >>>>> --------MYB52(1)         <------ZmHOX2a(2)--------->ALFIN1                                  -------- ------YAB1    --------->GLK1(2)        <------ZmHOX2a(1)     ---------->DOF2                <-------   tgttagatcgggataagaatttgttgagatcaaagagagagaggagtgtagtgagagaaagcttgaaagcattgtaacagagactaagtttccaagttct  6067700                               <xxxxxxxxxxxxxxxxsmallRNA(i)                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             <---------REM1(1)                             --------->O2                             --------->ANAC55(2)                             <---------O2                             <---------ANAC55(2)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      ------>NtERF2                      xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxx>smallRNA(i)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)               <---------ARR14(2) <---------ANAC58        --------->LBD16  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <---------HSFB2a(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       --------->HSFB2a(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <---------LBD16xxxxxxxxxxxxxxxx>smallRNA(s)    <---------ARR14(2)--------->LBD16    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <----------DOF2   <---------GLK1(1) <---------DEAR3(1) --------->LBD16                                <-----------GT1   --------->GLK1(1)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <---------ARR14(2)<---------LBD16   <---------LBD16       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->ARR14(2)xxxxxxxxxxxxxxxx>smallRNA(i)         ----------->GT1       <----------DOF2 >>ZML2<---------ANAC46  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------GLK1(2)    <----------DOF2 - ->ARR11(3)    xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------DAG2 <------ --ARR11(3)    --------->ARR14(2) <---------ANAC58 --------->DOF5.7(2)       <---------At4g35610    <   agtggatttccggagaggtttctccggcgagacgtagcgttccggtttggaacgtgaactcgttaaattctctgtgttcagcttttcttttactttcttt  6067800                                                                           <------------CBF                                                                           <XXXXXXXXXXXXXXXXXXXXMIR845A                                                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                    <----------DOF2              <---                                                                   ------>ZmHOX2a(2)            -----                                                                  <------ZmHOX2a(2)             <----                                                                 <---------ARR11(3)             -----                                                                 --------->ARR11(3)             -----                                                 <------------CBF--------->AGP1               <------                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      --------->MYB52(1)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             ----------->HVH21                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<XXXXXXXXXXXXXXXXXXXXXMIR845B       <---------WRKY38(1)         <---------ANAC58              <---------AGP1        --------->At4g35610 -------->ARR14(2)    <---------ZAT6  <---------TOE1(2)         <---------CCA1(2)      <---------At4g35610 ----DOF2     <---------GLK1(2)    <---------ANAC58            --------->MYB59         --------->ZAT2 ---------ARR14(2)<---------YAB1   <---------ANAC46            ----------->ARR10   xxxxxxxxxxxxxxxx>smallRNA(s)   cagttctggtcaattcgattcttagtgctaagttgattcgtgtgtttgtgagattgaagtgaagttagatctttacaaattggtatcagagctcacggtt  6067900                            --------->GLK1(1)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                          ================HOX2a_HOX2a                          ======================HOX2a_HOX2a                          =================HOX2a_HOX2a            <---------ARR14(2)            --------->ARR14(2)            ------>ZmHOX2a(2)            --------->GLK1(2)             =====================HOX2a_HOX2a            <---------ARR11(1)      ===========================HOX2a_HOX2a            ------->TEIL  =======================HOX2a_HOX2a            <-----------ARR10       ------>ZmHOX2a(2)           <---------CCA1(2)<---------GLK1(1)           <------ZmHOX2a(1)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<------ZmHOX2a(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)======================HOX2a_HOX2a   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ARR11(3)     <-----------GT1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------ARR11(3) --------->ARR11(3) ----GAMYB <---------ARR14(1)      <------ZmHOX2a(2) <-----------RAV1(2) ---->MYB111(2)           =================================HOX2a_HOX2a -----MYB46(3)            <------ZmHOX2a(1)<----------DOF2 <---------ARR11(3)                       < ---->MYB52(2)         *TSS--------->ARR14(2)   <---------WOX13(1)<----------DOF2           <-------- ---->MYB55(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<------ZmHOX2a(2)                   <xxxxxxxxxxxx -GAMYB <---------------------WRI1 ============================HOX2a_HOX2a         <---------YAB1   <   gttgagcgagtgcgaatctaagatggcaggaactccgatcgcgatctttgatggatcaggagatttttctttgtggaaaacaagtattatggcacatcta  6068000                                                                                 >>>>>>>>>TBF1                                                                     <---------LBD16                                                   <---------ZAT14   ------>ZmHOX2a(2)                                                   --------->ZAT14  --------->ARR14(1)                                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                            <---------At4g35610     --------->CCA1(2)                                           --------->RAP2.3(2)      <------ZmHOX2a(2)                                           --------->DEAR3(1)      <---------ARR11(3)                                          --------->RAP2.3(1)      <---------ARR14(3)                                         <---------ATERF1(1)       --------->ARR11(1)                                         --------->LBD16           --------->ARR11(3)                                         ------>NtERF2             --------->ARR14(3)                                        --------->DEAR3(1)         --------->ARR14(2)                                        --------->ANAC46           ------------------------>ANAC81               <------ZmHOX2a(1)       --------->ATERF1(1)         <---------ARR14(2)             <---------TOE1(3)         <---------LBD16            <---------GLK1(1)  --------->ATHB12       --------->At4g35610------>NtERF2         <---------HSFB2a(1)           <---- -----------HVH21        <---------At4g35610--------->At4g35610  ----------->ARR10   --------->CCA1(2) ---ARR10    <---------TOE2(3)       <---------ARR14(2)      >>>>>>>>>TBF1    >>>>>>>>>TBF1     ----- xxxxsmallRNA(i)     <-----------HVH21<---------ATERF1(1) >>>>>>>>>TBF1--------->LBD16        <------ -----------TGA1--------->ARR11(3)   --------->ARR14(2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <-------TEIL   agcgtcattggacttaaggatgttgtcatcggaacatcgtctccgccgctcactgcagaagaagaagaagatccggagaagaagaagaaacgagatgcag  6068100                                                    <-----------RAV1(1)                                                   <---------TOE2(3)                                                ------>ZmHOX2a(1)            --------->ARR11(3)                                                =====================================HOX2a_HOX2a           <---------ANAC58                    --------->TOE1(3)             <---------ARR11(3)           <---------ANAC58   <----------ID1   --------->TOE2(3)         ---------->DOF2          --- -----At4g35610            --------->DAG2  ------>ZmHOX2a(2)     <---------ARR11(3)               <-- ---->At4g35610           ---------->DOF2--------->ARR11(3)      --------->ARR11(3)              ---- -----RAV1(2) <---------WRKY18(1)        <---------ARR11(3) <---------ARR14(2)<------ZmHOX2a(2)------   atgatgcagcaaggcttgagcgatgtgataaagcgaagaatgtgatcttccttaatgttgcagataaggtcttaagaaagatcgagctatgtcaaactgc  6068200         --------->HSFB2a(2)     <---------ANAC58     <---------ANAC58    --------->HSFC1(2)                                            <---------At4g35610    <---------HSFC1(2)                   ------>ZmHOX2a(2)        --------->At4g35610 ------>At4g35610                --------->ATHB12         <----------DOF2                    -------- -------At4g35610               <---------YAB1 --------------->AGL15                         -------- ------->RAV1(1)          <---------MYB46(3)   --------->TOE2(3)  <---------ZAT2          <-------TEIL --->ZAT14     <----------DOF2  --------->ICU4--------->ANAC46    --------->ZAT2 <----------DOF2   agcagaagcttggggaactttagatcgattgttcatgattcgatctctacctcatagagtctttactcagctaagtttctatacttttaagatgcaagaa  6068300                                                                                      --------->ANAC58                                                                                      --------->ANAC58                                                                                   <-------TEIL                                ---------->DOF2       --------->ATHB12         <---------TOE2(3)                        --------->ATHB12              <--------HAHB4     <---------WOX13(1)                        <---------ICU4                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                       <---------YAB1      <---------ANAC46         --------->At4g35610                --------->GLK1(2)         <---------At4g35610       <---------At4g35610 --------->ANAC58     <---------TOE2(3) <---------RAP2.6(2)        <---------TOE2(3)  --------->ANAC46 --------->ANAC58    --------->YAB1   <-----------RAV1(1)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ->ANAC58       <---------ARR14(2)  <---------GLK1(2)<---------ATHB12 ----------->HVH21         ----- ->ANAC58   --------->YAB1   --------->TOE2(3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       <------   aacaagaaaatcgatgagaatattgatgatttcttaaagattgtggctgatttgaatcatttgcagattgaggtgactgatgaggttcaagcaattttgt  6068400  Previous    Next  AGI:  At4g09595.1    Description:  transposable element gene. copia-like retrotransposon family, has a 3.6e-299 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana) Range:  from: 6067923    to: 6072003    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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