Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     --------->MYB52(1)                               --------->ARR11(3)        ------>ZmHOX2a(2)                               <---------ARR11(3)       --------->CCA1(2)                               <---------ARR14(2)       <------ZmHOX2a(2)                 <------MYB83  --------->ARR14(2)      <---------ARR11(3)   <---------AHL20(2)                 <------MYB46(1)<------ZmHOX2a(2)      --------->AGP1       <---------AHL20(1)               <---------WOX13(1)------>ZmHOX2a(2)     --------->ARR11(3)   --------->AHL20(2)             --------->ATHB12  <---------AGP1          <---------AGP1   <---------YAB1            <---------YAB1     --------->AGP1--------->ANAC55(2)      --------->YAB1        <------MYB46(1)  <---------AtMYB61           <---------CCA1(2) ------->TEIL          --------->AHL20(2)    <------MYB83   gtttttggtcgagtctgattggttttttgttcagatctatcggatttatgtatttaagatctaataaacaaattataaaaaatttgattcgatttggtta  6049100                    <---------AHL20(1)                    --------->AHL20(1)                    <---------AHL20(2)                   --------->YAB1              --------->YAB1              --------->TOE2(3)             ----------->GT1            <---------TOE2(3)           <---------ICU4           --------->YAB1                        <---------AHL20(2)        --------->YAB1                          --------->AHL20(2)       --------->AHL20(1)      <---------YAB1--------->AHL20(2)   ----------->GT1  ----------->GT1--------->AHL20(2)   <---------AHL20(2)                <---------MYB46(3) ---------->DOF2  <---------AHL20(2)   --------->AHL20(2)             <----------DOF2--------->AHL20(2)     --------->AHL20(2)        ---   tcgattttattaataatgttaatataatccgacttactttggttagaaaaattaattcaaaagtaacaacaaaaaaaaattggataacaaaaccatctaa  6049200                                      --------->TOE2(3)                                      <---------MYB59                                    ------->TEIL                              --------->GLK1(2)                        --------->ANAC58         --------->AHL20(2)   <---------ARR14(2)          ----------->GT1         <---------AHL20(1)   --------->ARR14(2) ------>MYB83          --------->ANAC58         <----         <---------AHL20(2)------->GAMYB         ------>MYB46(1) <---------ARR11(3)            <-----  ------>ZmHOX2a(1)     --------->MYB52(1)     --------->AtMYB61 --------->ARR11(3)            ------ ------>ARR11(3)        <-----------GT1        <---------MYB59  --------->RVE1(1)              <-----   aatcctgctaattaattcacatctaataaccgaatccgaacctaaatgaccaaaccatttgtgtaaaaatctcaagcctagtccctatatttcaatagat  6049300                                                                          <------MYB83                              <---------RVE1(1)                   --------->ICU4                             <---------GLK1(2)                    <---------ATHB12    <----------DOF2          --------->ARR11(3)           --------->ARR14(2)  ---------->ID1             <---------ARR11(3)           <---------ARR14(2) <-----------GT1      <------ZmHOX2a(2)           --------->ATHB12<---------ATHB51   <---------YAB1 -----RVE1(1)        <---------ARR11(3)          <---------AHL20(2)       <------MYB46(1)           < ----GLK1(2)         --------->ARR11(3)          --------->AHL20(2)       ----------->GT1        <--- --->ARR11(3)      --------->ICU4                <---------AHL20(1)--------->YAB1  --------------->AGL15 ----ARR11(3)   --------->WRKY18(1)              --------->AHL20(1)<--------ATHB1  <---------------AGL15   ttttttcttttttttttggtcaagatcaatagatttttttcatcaattcaatttattgcaaatttgcaataatagttggtaaatactataaatgtaaatg  6049400                                 <------------CBF                                --------->ATHB51                                --------->ATHB12                                --------->YAB1                                <---------ICU4                                -------->HAHB4                               --------->ICU4                               <---------YAB1                               <---------ATHB51                             --------->YAB1                            <---------AHL20(2)                            <---------YAB1                           <---------AHL20(2)                           --------->AHL20(2)           ---------->DOF2 <---------AHL20(1)  --------->LBD16          --------->AHL20(1) <---------ANAC55(2)    --------->YAB1 --------->ANAC55(2)    <---------AHL20(2) --------->ANAC58       --------->AHL20(2) --------->ANAC58    --------->YAB1                         --------->ANAC58                        < --------->O2       --------->ICU4                          --------->ANAC46                      --- <---------O2       <---------ATHB51                        --------->ANAC58 ----------->GT1--------- ---------LBD16     <---------ATHB12                <---------ICU4<------------CBF     <---------CCA1(2) --------HVH21  ------------>CBF<--------ATHB1   <---------WRKY38(1)        <-------TEIL  --------->YAB1   gtcacgggataacaaaagagcaataataatataataattgcataagacgagtcaacatgaccaagaaacattgaagggttcgtaacttcgtatcatcttc  6049500          --------->YAB1                                                    --------->ARR11(3)       <----------DOF2                                                      <---------ARR14(2)    ------>ZmHOX2a(1)                                                       --------->ARR14(2)   <---------ALFIN1                                                         <---------ARR11(3)      - ------>ZmHOX2a(1)             <------NtERF2                     ------>MYB83                       - ---------ALFIN1          --------->DAG2                         ------>MYB46(1)                    - --->ZmHOX2a(1)         ---------->DOF2                        <---------MYB59           <---------ZAT14 >At4g35610   *TSS----------------->AGL3    <---------ATHB12   --------->AtMYB61         --------->ZAT14   ctcctcctcctttgataaacaccaaaaaaaggcagagactttcgaaatcaagaacaatggagaaaccaaaccctagaagaccctcaaacagtgttcttcc  6049600                                                                                           <---------YAB1                                                                                         --------->YAB1                                                                                         <---------ICU4                                                                               --------->ZAT14   <---                                   <------NtERF2                               <---------ZAT14   ----                                ------>ZmHOX2a(1)                            <---------ZAT14---------                     <------ZmHOX2a(2)                                 ------>MYB46(1)  <---------ATHB12 -------->ANAC46     ==================HOX2a_HOX2a                     ------>MYB83     --------->ICU4 -------->ANAC58    --------->ARR11(3)  --------->DAG2           --------->MYB46(3)   --------->GLK1(1) -------->ANAC58    <---------ARR11(3) ---------->DOF2----------------->AGL1 --------->ZAT14<--------   atacgaaacaccaagattaagagatcactatctcctcggcaaaaagctaggccaaggccaatttggaacaacctatctctgtacagagaaatcatcatca  6049700                                                                               ======================                                                                               <------ZmHOX2a(2)                                                                              <---------ARR11(3)                                                                              --------->ARR11(3)     <---------YAB1                       <---------ANAC46                <-------TEIL   <-----------GT1         <---------ANAC55(2)                           --------->GLK1(2) ------At4g35610           --------->ANAC58     --------->ZAT6    <---------ANAC46 ----->At4g35610           --------->ANAC58  --------->REM1(2)    <---------ANAC58       --------->At4g35610 >YAB1           --------->WOX13(1)       <---------ANAC58        <---------ANAC58--------->AtLEC2 -ICU4         <---------ATHB12           <---------ANAC58<---------ARR11(3) <---------At4g35610   gctaattacgcttgcaaatcaatcccaaaacgtaagcttgtatgtcgtgaagactacgaagatgtatggcgtgagattcagatcatgcatcatctctctg  6049800                                                                                    <----------DOF2                                                                            --------->ALFIN1                                                            <---------HSFB2a(2)     <---------DAG2       <-----------RAV1(1)           --------->GLK1(2)      --------->HSFB2a(2)   <---------At4g35610    ------>ZmHOX2a(1)       --------->ICU4               <---------YAB1  <---------AtMYB61  ------>ZmHOX2a(2) ==========HOX2a_HOX2a   xxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------TOE2(3)<---------MYB46(3)   agcatcctaatgttgttagaatcaagggtacttatgaagactctgtttttgttcacattgttatggaagtttgtgaaggtggtgagctttttgatcggat  6049900                                                                                                    -                               --------->At4g35610                                                 <-                            <---------ZAT2                                                        <--                            <---------At4g35610                           xxxxxxxxxxxxxxxxxxx>smallRNA(s2)                            --------->At4g35610                     <---------ANAC58              ---                     ------->TEIL                 <---------YAB1    <---------ANAC58             <---                    <---------DOF5.7(2)      --------->ZAT6 <---------MYB46(3)           <---------YAB1    ---------->DOF2<---------ZAT18          <---------TOE2(3)    <---------TOE2(3)  <---------ZAT6---   tgtttctaaagggtgttttagtgaacgtgaagctgctaagttgattaagactattcttggtgttgttgaggcttgtcattctcttggtgttatgcataga  6050000  Previous    Next  AGI:  At4g09570.1    Description:  CPK4 (calcium-dependent protein kinase 4); calmodulin-dependent protein kinase/ kinase. Identical to Calcium-dependent protein kinase 4 (CPK4) [Arabidopsis Thaliana] (GB:Q38869); similar to ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2), calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G35670.1); similar to CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5), calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G35310.1); similar to CDPK9 (CALCIUM-DEPENDENT PROTEIN KINASE 9), calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G23580.1); similar to unnamed protein product [Vitis v Range:  from: 6049514    to: 6052332    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version