Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        <---------ZAT6                <---------ICU4              <---------TOE2(3)            <---------AHL20(2)              --------->AHL20(2)           --------->AHL20(2)               --------->YAB1          ------->TEIL       --------->AHL20(2) ------>DOF2--------->AHL20(2)    ------->TEIL           <-------TEIL        <-----------GT1  -------   aaagtatatagaaattaatatttagagtcaaaaatgaatataacaataaaaaatgcaagtacataagatgaatctaattttactaagtataaaataacaa  6045900                                                                          --------->ALFIN1                                                                        <---------ANAC58                                                                        <---------ANAC46                                                                        <---------ANAC58                              <---------AHL20(1)                      --------->SPL7                       <---------ICU4                               <---------SPL7                      <---------ATHB51                            <-------MYC3                      --------->ICU4  <-----------GT1             ------->MYC3 <---------GLK1(1)                      --------->AHL20(2)                         <------------------SPL14           ----------->GT1  <---------TOE2(3)                    --------->ANAC58      --------->AHL20(2)   <-----------GT1                       --------->ANAC58              <-----    --------->TOE2(3) <---------AHL20(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         --------- -->MYB46(3)        --------->YAB1 <---------AHL20(2)          <---------ALFIN1--------->GLK1(1) ----   acaaaacataaattagtaacaaaaataattaacatatttttatctaaacaattttcaaaacaaacccacgcgtaccgtgggaattcatctagtatttatg  6046000                                                                             --------->YAB1                                                                             --------->MYB52(1)    <-------GAMYB                                                            <---------ICU4   <------MYB46(1)                 <---------YAB1                           <---------AHL20(2)      -   <---------MYB46(3)            <---------ICU4                             <---------ATHB51        <   ----------->GT1              <---------YAB1                          --------->AHL20(2)         --   <------MYB83        --------->YAB1                    --------------->AGL15         --------->AHL20(2) ----YAB1 <----------DOF2     --------->YAB1       <---------TOE1(2)  ----------->GT1  --------->YAB1 >ICU4    <---------DAG2  <-------TEIL<-----------GT1    <---------------AGL15  ----------->GT1 ----- ------>DOF2         <---------WOX13(1)      --------->YAB1     ----------->GT1--------->ICU4  <-----   aaagttggttaacttttcatgtgaatgatacatcatcattttagcatttatcacatgttctctaaatagtaaatgtaaataatggttaattatacatatt  6046100                                           --------->AHL20(1)                              <---------AHL20(2)                              --------->YAB1  <---------AHL20(1)                              --------->AHL20(2)                                     <---------YAB1                            <---------AHL20(2)<---------AHL20(2)                    --------->AHL20(2)              --------->AHL20(2)    <---------AHL20(2)                             <---------ICU4        --------->ANAC55(2) <---------YAB1--------->AHL20(2)                      --------->ICU4      <-----------GT1       --------->AHL20(2)--------->AHL20(1)             <---------At4g35610 ---- -------->AHL20(2)         --------->TOE2(3)  --------->AHL20(2)      <---------GLK1(2)        <----- ---------AHL20(2)         --------->YAB1 <---------AHL20(2)          <---------ARR14(2)    --------- ------->AHL20(2)        --------->ICU4  <---------AHL20(2)           --------->ARR14(2)<---------AHL20(2) ---->AHL20(2)<---------AHL20(2)    --------->AHL20(2)                --------->ARR11(3)<---------YAB1 ----AHL20(2)--------->AHL20(2)<---------TOE2(3)                     <------ZmHOX2a(1)--------->YAB1-   atttaattttacatatttaattgtatcaatattaatatttaaaattattttattagttttctcatgctctaggattttctgctaatttttataattttaa  6046200                                                      <---------YAB1                                                     --------->KAN4(2)                           <---------AHL20(2)    <------MYB83                        <------------CBF         ----------->GT1                --------->YAB1                   <------MYB46(1) ----->TOE2(3) <---------AHL20(2)               --------->MYB59 ------GT1 --------->AHL20(2)                  <--------P     <---------GLK1(2)            <---------ALFIN1 >YAB1 ----------->GT1--------->ARR11(3)    <---------HSFB2a(2)                           *TSS   ---- -------->AHL20(2)    <---------AHL20(1)    --------->HSFB2a(2)        ---------->DOF2 --------->At4g35610   cttaaaatatggaataaataatagtatattgaattagctaatagttcgagtaggttattcttcagaatttttaaaaagagtatgtgagtagctccactat  6046300                             <---------AHL20(1)                             --------->AHL20(2)                             <---------AHL20(2)                       <-----------GT1                    --------->YAB1                    <---------ICU4                   <---------YAB1      <---------AHL20(2)                   --------->ICU4     --------->AHL20(2)                 --------->YAB1   --------->AHL20(2)                <---------YAB1<---------YAB1                             <---------ANAC58                <---------AHL20(2)<---------AHL20(2)                     <---------ANAC58       <---------TOE2(3)    --------->YAB1                               <---------ANAC46      ------       <---------TOE1(3)  --------->TOE2(3)                          <---------GLK1(2)         <----- ----->YAB1 ----------->GT1<---------YAB1                   ----------->GT1        <-------TEIL------   caaatttttgaggtttgtataattataacattataatttataaaattgctatagcacaaaaattgtttaaagattgtgtgagtgatacattgttgaaaat  6046400                                                                 <---------ICU4                                                              <---------ICU4                                                              --------->ATHB51                                                              <--------ATHB1         <---------HSFB2a(2)                                     <---------LBD16          <--------HAHB4         --------->HSFB2a(2)                      <---------RVE1(1)                       --------->YAB1   <---------------AGL15                      <---------CCA1(1)                --------->At4g35610    ----------------->AGL3    <---------TOE2(3)<---------ARR11(3)      <------MYB83    <---------ATHB51 =======================    <---------YAB1   --------->AHL20(1)      <------MYB46(1) --------->AHL20(2)--------------->AGL15 --->AHL20(1)        <---------AHL20(1)   <---------ANAC58   --------->ICU4 <---------ARR14(2) ----AHL20(1)        --------->ARR11(3)   <---------ANAC58   <---------ATHB12 ----------------->AGL2 --->ARR11(3)    ---------->DOF2    <-----------GT1    <---------At4g35610  --------->ARR14(2)   attgttaagaatgtattgctaaagatatttatagcaattcacgggcttggtatttggagctcaataattatctcatcaaatccagttttagaaactaagt  6046500                    <---------------AtSPL8                    --------------->AtSPL8                ------>ZmHOX2a(1)               --------->TOE2(3)              ----------------->AGL1           ------>ZmHOX2a(1)              --------->YAB1              ----------------->AG          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)            <-----------GT1                 ------>MYB83                     --------->ICU4         <---------ICU4                <-----------GT1          --------->TOE2(3)  <---------ANAC55(2)         --------->ATHB51         ----------->GT1    --------->ATHB12     --------->ICU4 ===============================MADS_MADS   ------>MYB46(1)     --------->YAB1<---------ICU4        <   gtctgaatgcattatttccttatttgtacatacaaaatgttataccatcctctattcattggtctatgttaatgacataatcatcacatgaaacaatttg  6046600                           --------->STY1(2)                      <---------ARR11(3)                      --------->GLK1(2)                      --------->ARR11(3)            <---------AHL20(1)            --------->AHL20(1)          <---------AHL20(1)                             ----------->GT1          --------->AHL20(1)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       ---          --------->ARR11(3)                         <---------ANAC58                            <---          <---------ARR11(3)                         <---------ANAC58  --------->YAB1           xxxxx  ------->TEIL  <-----------GT1                      <---------ANAC46xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -------TEIL--------->AHL20(2)              ---------->DOF2   --------->ICU4                   ------   gatgcatttgaaaatattttacaaaatctagctatcagttttcacttaaagacttgggtgagtaaatattgaagaataacttacaaattgattctatcaa  6046700                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                    <---------ZAT6                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                           xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                         <-------GAMYB   <---------ZAT18                    <----------DOF2    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   <---------ANAC58   <---------ANAC46                                            ---                   <---------ANAC58   <---------ANAC58                                        <------                 <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           ------>ZmHOX2a(1)                <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             ---------            --------->TOE1(3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                           ---------            --------->TOE2(3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                --------->ARR11(3)        <xxxxxxxxxxxxxxxxsmallRNA(s)  <---------ANAC58                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(i)    <---------ICU4       <xxxxxxxxxx       <xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxxxxxx>smallRNA(i)   <xxxxxxxxxxxxxxxxsmallRNA(i)<------ ------>YAB1<xxxxxxxxxxxxxxxxsmallRNA(s) <---------ZAT14         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)xx ------ATHB12  <xxxxxxxxxxxxxxxxsmallRNA(i)----------->GT1   ------>ZmHOX2a(1) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxx>smallRNA(i2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --->WOX13(1)<xxxxxxxxxxxxxxxxsmallRNA(i)--------->ZAT14  ------>ZmHOX2a(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   tcacaaatcgcaaacctgaatgctttcggttgaacaaatctcgtgcagttactagtgttcctcctctaccaaaatgaccaagatgatatagcatcctacg  6046800  Previous    Next  AGI:  At4g09565.1    Description:  transposable element gene. copia-like retrotransposon family, has a 2.8e-08 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element) Range:  from: 6046290    to: 6047585    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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