Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              ------>ZmHOX2a(1)                                                                         ---------->ID1       <-----------GT1                                             <-----------GT1         <---------TOE2(3) -------->DOF2                                                --------->AHL20(2)         <---------AHL20(2) ---->TOE2(3)                                                 <---------AHL20(2)      <---------AHL20(2) ---->TOE1(3)                                                --------->AHL20(2)      <---------AHL20(2) ---ARR11(3)                                               <---------ARR11(3)     ----------->GT1 -->ARR11(3)                                        --------->YAB1<---------AHL20(2) --------->AHL20(2) --CCA1(2)     ----------->GT1          <-----------HVH21  --------->ARR11(3)    <---------YAB1   ttaaagtttctactatctagttactaaaatgttttacaaatatgtcatttccaattttaaagatttatttaacttgtcctaatatgattaaataatgttt  5996400                                          <---------ARR11(3)                                          <---------AHL20(1)                                          <---------AHL20(2)                                          --------->AHL20(2)                                          --------->ARR11(3)                                          --------->AHL20(1)                                         --------->AHL20(2)                                       --------->AHL20(2)                                     <---------AHL20(2)          <---------AHL20(2)                                     --------->AHL20(2)    <---------DDF1         ----------->GT1                                    --------->YAB1         ----------->RAV1(1)   ----------->GT1                                   <---------YAB1        --------->DEAR3(2)    ---------->DOF2                                 --------->YAB1         <---------At5g28300 --------->AHL20(2)                                <---------YAB1         <-----------GT1      <---------AHL20(2)  <----                             <---------YAB1   <-----------GT1    --------->AHL20(2)  --------->AHL20(2)   tttctactaatacattatagacatatcatttctgattataaaaatatatttctatttttaccgacatataatttcaaattaaaaagataaattagtattt  5996500                ---------->DOF2                  <----------DOF2             --------->AHL20(2)              <-----------GT1             --------->YAB1             --------->AHL20(2)            <---------YAB1              <---------AHL20(1)         <---------YAB1                 <---------AHL20(2)  --------->AHL20(1)                    --------->AHL20(1)  <---------ARR11(3)                ------>ZmHOX2a(1)  <---------AHL20(1)            <-----------GT1  <---------DAG2      ----------->GT1              <-- -------GT1 --------->ICU4  <---------AHL20(2)<-----------GT1<-----------GT1      <---------YAB1-----   acaaaatatttctaattataaagcatatgtttattttcctaatattttaaactttttgattttctaccatctagttaaaaagtttttatagacatcaatt  5996600                                                                                                =====                                                                                                -----                                                                                               ======                                                                                               <-----           <---------ARR11(3)                                                                 -------           --------->ARR11(3)                                                                 <------           --------->AHL20(1)                                   <---------AHL20(2)            <------           <---------AHL20(1)                                  <---------AHL20(2)             -------         <---------ARR11(3)                                 --------->AHL20(2)                <------         --------->ARR11(3)                                 <---------AHL20(2)                -------     ---------->DOF2  <---------RVE1(1)                    <---------AHL20(1)                 <------  --------->YAB1      <---------CCA1(1)                    --------->AHL20(2)                 <------  --------->AHL20(2) <---------ARR11(3)                    <---------AHL20(2)                 ------- <---------YAB1      --------->ARR11(3)               <---------ARR11(3)                     <------- --------->ICU4   --------->HSFB2a(2)             <---------ANAC55(2)                 --------->AHL20(2) -------YAB1      <---------HSFB2a(2)             --------->ANAC55(2)                 <---------AHL20(2) ---->YAB1--------->CCA1(2)  <---------CCA1(2)  --------->YAB1 --------->AHL20(2)    --------->AHL20(2)   ctaattataaagatatatttctagatatttcaaatctcttacttctactatcacgagataatttttttaatagacataacaattcaattttattcagatc  5996700         <---------ICU4        --------->ICU4      --------->YAB1      <---------ICU4     --------->ICU4   --------->YAB1 =========================HOX2a_HOX2a ->ZmHOX2a(2)               <---------ARR11(3) =========================HOX2a_HOX2a -ZmHOX2a(2)                --------->ARR11(3) -->ARR11(3)               <---------CCA1(2) ---ARR14(2)              <---------AHL20(1) ---ARR11(3)              --------->ARR11(3) -->ARR14(2)              --------->AHL20(1) ---GLK1(2)               <---------ARR11(3) -->AGP1<---------YAB1    <---------AHL20(2) ---ARR14(3)           --------->YAB1                          <-----------TBP -----ARR10            --------->AHL20(2)                <------------CBF -->ARR14(3)       <------ZmHOX2a(1)                   --------->ICU4 <-------TEIL    <-------TEIL --CCA1(2)       <---------TOE2(3)                ----------->GT1----------->TBP<-------TEIL        *TSS   ttcgaccataatgaatacttaggaataatatatctacaaaaatagaaacatatcgtaaaaattggatatatatacatagacatacatatacataaactta  5996800                                                                             ---------->ID1                                                                         <----------DOF2                                                                        <---------DAG2                                                                 <---------YAB1                                                                --------->ARR11(3)           --------->ZAT6                                       <---------ARR11(3)   --------->GLK1(1)                                           --------->RVE1(1)   <---------GLK1(1)                                           --------->CCA1(1)  <---------ARR11(3)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------ICU4  --------->ARR11(3)                                <---------ICU4--------->YAB1        --------->YAB1   catagatatccaaacactaaattagttgaatatcaattcaattgtcagttttaaaaatggccaaaatatcatcacctttggctctcttattcatcatgtt  5996900                                                                              --------->ANAC58                   ------->MYC3                                         --------->ZAT2                   <-------MYC3    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->At4g35610      xxxx                  --------->O2     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------ZAT2         <-----                  <---------O2--------->HSFB2a(2)                       <---------At4g35610    <-----              -------->P      <---------HSFB2a(2)                    --------->LBD16    <---------AHL20(2)        <---------YAB1    --------->GLK1(1)                         --------->ANAC46   <---------AHL20(2)        --------->ICU4 <---------ANAC46                            --------->ZAT18     --------->AHL20(2)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   <---------MYB52(2)     --------->TOE2(3)      --------->YAB1   <---------ANAC58                       --------->MYB46(3)   --------->ICU4xxxx      <---------ICU4--------->ALFIN1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  --------->ANAC58 <-----     <---------ATHB12  <---------ANAC58 <---------ANAC46 --------->ANAC46     --------->ANAC46 <-----   atcttccatcatgatcaaccatgtggcgagttccaaaacatggtgtatagcaactctaatcgcaacgaatgcgcagctgcaagcaaatattaattttgca  5997000                                      --------->ARR11(3)                                      --------->ARR14(2)                                      <---------ARR11(3)                                      <---------ARR14(2)                                      <---------AGP1  --------->WRKY18(1)         ----------->RAV1(2)             --------->AtLEC2 xxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------CCA1(2)    --------->GLK1(2)                        -- ----ANAC46                  ------>MYB83                 --------->ARR11(3)                      <-- ----ANAC58            --------->WOX13(1)          --------->TOE2(3)                            ----- xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------MYB46(3)--------->YAB1      ------->TEIL         <----- ----AtLEC2  <---------ANAC46-------->P ------>ZmHOX2a(2)--------->YAB1--------->AtLEC2     <-------- ----ANAC58 --------->ATHB12 ------>MYB46(1)    <-----------GT1     <---------ATHB12    ------->TEIL   tgtagtcaaggagttgattgtaggccaatccaacctggtggatcttgttttatccctaataatcttgcaaatcatgcatcgtttgtgatgaactcttatt  5997100                                                                    <---------TOE1(2)                                                                   --------------->AGL15                   <---------ATHB12                                <---------------AGL15                  ------>MYB46(1)                                 <-----------------AGL1                  ------>MYB83                                    <-----------------AGL2                 --------->WOX13(1)                               <-----------------AG xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  <---------At4g35610 ------->YAB1 <-----------------AGL1                    --------->At4g35610 -------YAB1<---------SPL7                      <---------HSFB2a(1)------>ZmHOX2a(1) ---->YAB1--------------->AtSPL8            --------->LBD16     <------ZmHOX2a(2)         <---------ANAC58 ----YAB1 --------------->AtSPL3          <---------LBD16      <---------ARR14(2)         <---------ANAC58 -YAB1    <---------------AtSPL8         --------->MYB52(1)    --------->ARR14(2) <---------ANAC46   atcagactcatggtcgtaccaatcaggcatgtagtttcaaaaataccggaacatttgctgctaccgatcctagttttggtaaatgtgtgtatgcgtctta  5997200                                                                   ----------->GT1                                                             >>>>>>>>>>>>>>>>>LFY               --------->YAB1                                <<<<<<<<<<<<<<<<<LFY              <---------YAB1                               <xxxxxxxxxxxxxxxxsmallRNA(i)        ------   --------->AHL20(2)              ---------->DOF2<---------MYB46(3)                   ---------->DOF2   <---------AHL20(2)             --------->AHL20(2)       --------->YAB1             <---------AHL20(2)   <---------AHL20(1)       --------->YAB1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)         --------->AHL20(2)   --------->AHL20(1)       ----------->GT1    ----------->GT1 --------->ATHB12 --------->ANAC55(2)  --------->AHL20(2)--------->ICU4<---------AHL20(2)      <---------ATHB12      <---------ANAC55(2)   gaaattttattttgttttgataatttttaagcgtaataaaagaatgaattggtgattacaatcatccattggtgaatacaatacataataaaagaaatgg  5997300  Previous    Next  AGI:  At4g09462.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09467.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09464.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83700.1); contains InterPro domain X8 (InterPro:IPR012946) Range:  from: 5996800    to: 5997263    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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