Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  --------->ANAC58                                                            --------->ANAC46                                                     --------->ANAC58                                                     --------->ANAC58                                                     --------->ANAC46                                                   <-----------RAV1(2)                                         ======================RAV                                         ----------->RAV1(1)--------->ANAC58                        <---------ZAT14xxxxxxxxxxxxxxxx>smallRNA(i)    <---------CCA1(2)                      --------------->AtSPL8       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <---------HSFB2a(2)         ------>ZmHOX2a(1)     --------->ANAC58          --------->HSFB2a(2)  --------->ARR14(2)----------->RAV1(1) <---------ALFIN1            ---- -------LBD16  <---------ZAT14<xxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->ANAC58               <-----   tctggaatgctactgggagtactgactgtaccaaaacctcctccaacagtgccacagggaacaagcaagccccatatcaatgtgtgatgaagttgaagga  5902400                                                                                       ------>ZmHOX2a(2)                                                                                       <xxxxxxxxxxxxx                                                                                      --------->At4g35610                                                                                      <------ZmHOX2a(2)                                                                                     <---------ARR11(3)                                                                                     <-----------ARR10                                                                                     <---------ARR14(2)                                                                                     <---------AGP1                                                                 <-----------TGA1    --------->ARR14(2)                                                              ================================HOX2a_HOX2a            --------->ZAT18                                   ===============================HOX2a_HOX2a         <---------ANAC46                                     ------>ZmHOX2a(1)      --------->GLK1(2)        <---------AtMYB61                          --------->GLK1(1)                <---------CCA1(2)        --------->DAG2                   ----------->HVH21<---------ARR11(3)        <---------ARR14(1)       --------->SPL7                  <---------ANAC46   --------->ARR14(2)       --------->LBD16      <xxxxxxxxxxxxxxxxsmallRNA(i)     <---------ANAC58   <---------ARR14(2)      <---------HSFB2a(2)      <---------MYB52(1)           <---------ANAC46<---------At4g35610            --------->HSFB2a(2)     xxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <---------ANAC58  <---------CCA1(2)       <---------LBD16     <---------SPL7                <---------ANAC58<---------GLK1(1)          <---------GLK1(1)    <x ----->ZAT2--------->ALFIN1        <---------ANAC58--------->At4g35610        --------->GLK1(1) <xxxx -ZmHOX2a(1)<---------ZAT18    <------ZmHOX2a(1) <------ZmHOX2a(1)         --------->ICU4    --------   gcagggtcgtaaggtggacttccacagttagaaggaggcttgtgtgatggaggagctccatatccttcgtcatagtactgatttccggatctgaataaag  5902500                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                           <xxxxxxxxxxxxxxxxsmallRNA(i)                                         ------>MYB46(1)                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                       --------->AtMYB61                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            <---------ANAC55(2)  <xxxxxxxxxxxxxxxxsmallRNA(i)                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      --------->AHL20(2)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               --------->YAB1                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                --------->TOE2(3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <<<<<<<ZML2 ---------->DOF2--------->AHL20(1)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->HSFB2a(2)    <---------YAB1      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <--------     <---------bZIP60(1) <------ZmHOX2a(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)            --------->ATHB51     --------->bZIP60(1)<---------ARR11(3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <---------YAB1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)------>MYB83  xxxxxxxxxxxxxxxx>smallRNA(i)      <---------YAB1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <---------AHL20(1)  ------ xxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <---------AHL20(2)<xxxxxxx xxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxsmallRNA(i)      <---------TOE2(3)     <---------AHL20(2) -->DOF2--------->ATHB12--------->ARR11(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------AHL20(2)--   aagcatggcatcatttggaagtaagagatcacatgagaataccatccctagaaccgagagagaaaagtttatgttaataaatttttattgtataattgat  5902600                                          --------->ANAC58                                          --------->ANAC58                                          --------->ANAC46                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    --------->ZAT14     <-----------GT1                   <---------ZAT6    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)        ----------->GT1                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        --------->DAG2               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       ---------->DOF2       --------->TOE2(3)        ----------->GT1       <---------------AGL15 -WOX13(1)--------->YAB1     --------->DAG2      --------->ANAC58           ----------->GT1 --->ARR11(3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->ANAC58       ---------->DOF2            -- xxxxxxxxxxxxxxxxsmallRNA(le3)----------->GT1  ---------->DOF2     ------------------------>ANAC81 <- --------->GT1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------------->AGL15 <----------ID1    -------   attgaaaaacattaataaacagtgttcacataaggtgtaaattcaccccaaaagcactctaaaaagtaaaaaccaaaagagaaaaaaacatagaaatggt  5902700                                            <---------MYB52(1)                                           --------->At5g28300                                           <-------GAMYB                                       ------------>MYB.PH3(1)           --------->ARR14(2)                                      <---------ARR14(2)                 <---------ARR14(2)                                      --------->ARR14(2)                 --------->ARR11(3)   <------     <---------AHL20(2)            --------->YAB1      --------->MYB52(1)<---------ARR11(3)  <-------     --------->YAB1                <---------AHL20(2)  <---------At5g28300   ----------->GT1<--------     --------->AHL20(2)      --------->ANAC55(2)    <---------WOX13(1)  --------->CCA1(1)  <---------AHL20(2) ------->ANAC55(2)         <---------AHL20(2)    <---------AHL20(2) --------->AHL20(2)    --------->ICU4 --------ANAC55(2)         <-----------GT1----------->GT1   <---------MYB52(1)       --------->YAB1 ---->GT1         <-------TEIL     --------->AHL20(2) <-----------GT1   --------->RVE1(1)<-----------TBP   tacttaataatataccgagtttcatctatttacttaataatatacggttatttgatttaccggttaactaaaaaatatctggtttaatcgtatttattgt  5902800      --------->ANAC46    --------->YAB1<------NtERF2    --------->ANAC46   *TSS -----RAV1(1)    ------>NtERF2 --YAB1----------->RAV1(1)                         <---------LBD16                   <----------DOF2 ----CBF  <------------CBF                  ----------->RAV1(1)         --------->GLK1(1)   tggcaaacacaacattgggcgcgaagtggtttttgatgcccttcaacaacatttgggggtttcatttcaatcgcatttctagggtttctttctctacgat  5902900                                                                                                   --                                                                                                   <-                                                                                                  ---                                                                                                 <---                                                                                                <----                                                                                   ------>NtERF2<----                                                                                 --------->ZAT18<----                                                                                ------->GAMYB  <-----                                                                               <---------DEAR3(1)<---                                                                            <---------WRKY38(1)<-----                                                                            <---------WRKY12   ------                 <---------LBD16                                          ------>NtERF2        <-----                --------->ALFIN1      --------->ANAC58                  <---------ANAC46       <-----      <-------TEIL                    --------->ANAC58                  <---------ANAC58      <------     --------->ARR14(1)               --------->GLK1(2)                 <---------ANAC58      <------    --------->ARR11(1) --------->GLK1(2)                                <---------RAP2.6(2)  <-------    <---------GLK1(2) <---------GLK1(2)                         >>>>>>>>>TBF1  --------->ANAC46------    --------->ARR14(2)--------->ARR14(2)                    <------ZmHOX2a(1)--------->MYB52(1)------    <---------ARR14(2)<---------ARR14(2)        <------ZmHOX2a(1)      <---------LBD16  <---------REM1(2)   tcaatagattcggacgaattgggggattctgaccagagagaagctatggaggaaaacgaagaggaagaagaattgcggccaacggcgctatacacggtcg  5903000                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                 ----                                                                                                 <---   <-----------RAV1(2)                                                                           <--- ------->MYB55(2)                                                                               ----- --------MYB46(3)                                                                               <---- ------>ALFIN1                                                                                  ----- ------MYB52(1)                                                                                ------ --MYB83                                                                                       ------ --MYB46(1)                                                                                    ------ -----DEAR3(2)                                                                                 ------ ----DREB2C(2)                                                                                 ------ ----GAMYB                                                                 --------->ARR11(3) <------ ----DEAR3(1)                                                              <---------ARR11(3) ------- --->MYB111(2)                                    <---------LBD16        ----------->ARR10    <------ ----MYB46(3)                                   <---------REM1(2)       <------NtERF2        -------- ----DEAR4(1)                               <---------WRKY38(1)       <---------ANAC46      <-------- ---MYB55(1)                               --------->WRKY18(1)       <------NtERF2        --------->GLK1(2) ---ORA47(1)     <----------DOF2       <---------LBD16            --------->RAP2.6(3)     <---------ARR14(2) ----HVH21------->TEIL    <---------LBD16--------->LBD16        --------->ANAC46          --------->ARR14(2) --->MYB46(2)   --------->TOE2(3)   <---------GLK1(1) <---------PCF2------>NtERF2        <---------GLK1(1) --->MYB55(2)<-----------GT1        <----------DOF2--------->ANAC46<---------DEAR3(1)----------->GT1-   gtggttcagacgaatttacctttgtttctcccgatgggctctccggtcaatacacgggccctgatcacgacggcgtagttcttcagactgaaaatccggc  5903100      <------------AtMYB77    --------->MYB52(1) ------->DEAR3(1) ------->RAP2.3(3) ------->RAP2.3(2) ------->DREB2C(2) ------>ORA47(2) ----NtERF2 ------>RAP2.3(1) ------>DEAR4(2) ------>DEAR3(2) ------>ERF1 ------>ATERF1(1) -->NtERF2 ------ATERF1(1) ------RAP2.3(1) ---->DEAR3(1) -----DEAR3(1) ---->RAP2.3(2) --->ERF1 --->ATERF1(1) --->RAP2.6(1) --->RAP2.3(1) --->RRTF1(1) ---RAP2.3(1)                                                     --------->ATHB12 -->LBD16 <---------ANAC58               ------->TEIL          ------>ZmHOX2a(2)--------->ANAC58 ---ATERF1(1) <---------ANAC58        <---------YAB1          <------ZmHOX2a(2) --------->ANAC46 ->ANAC46 <---------ANAC58          --------->YAB1   --------->DAG2   <------MYB83 -LBD16------->GAMYB             <---------CCA1(2)  ---------->DOF2   <------MYB46(1)<---------ALFIN1 ----->NtERF2 <---------ANAC58<-------TEIL    ----------->GT1--------->ARR11(3) --------->ANAC58   gccgactaactgtcttgcttactacttcgaggttcatatcatgaatgctggtgaaaaaggagagatcgcgattggtttctccaaggaacacatctatagc  5903200                                                                    --------->ATHB12                                                                    --------->ATHB51                                             <---------ANAC58       -------->ATHB1                                             <---------ANAC55(2)    <--------ATHB1                                             <---------ANAC46       --------->YAB1                                             --------->ANAC55(2)    <---------ICU4     <------MYB46(1)                                             <---------ANAC55(1)   <---------ATHB12    <------MYB83                                             <---------ANAC58      --------->ICU4     --------->MYB59                                        <---------ICU4   --------->ANAC58    <---------YAB1 ---------                   <----------DOF2<---------At5g28300    --------->ANAC58<---------GLK1(2) ----------             <----------DOF2     <-----------GT1--------->ATHB12   <---------YAB1 --------->ATHB12   gaagggtatcgttttctttccctttcaattcgcatttaccacttattgcgtgatttgatactcaatacaatcattgattctgtttgatttggtacctgag  5903300  Previous    Next  AGI:  At4g09310.1    Description:  SPla/RYanodine receptor (SPRY) domain-containing protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09250.1); similar to SPla/RYanodine receptor (SPRY) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G09200.1); similar to ranBPM-like [Oryza sativa (japonica cultivar-group)] (GB:BAD15463.1); contains InterPro domain CT11-RanBPM (InterPro:IPR013144); contains InterPro domain B302, (SPRY)-like (InterPro:IPR001870); contains InterPro domain SPla/RYanodine receptor SPRY (InterPro:IPR003877); contains InterPro domain LisH dimerisation motif (InterPro:IPR006594); contains InterPro domain CTLH, C-terminal to LisH motif (In Range:  from: 5902823    to: 5905369    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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