Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   --------->YAB1                <---------ATHB12               --------->ANAC58               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)               --------->ANAC58              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)              --------->WOX13(1)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           --------->ANAC58           ------->GAMYB           --------->ANAC58        ----------->RAV1(1)                                      <--------          --------->MYB59         --------->REM1(1)                   <---------AHL20(1)    ---------          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                        --------->AHL20(2)    ---------        <<<<<<<<<MYB98          <-----------GT1                       <---------AHL20(2)    <--------        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  <----------ID1            --------->AHL20(2)        <---------MYB52(1)   ----------->GT1            --------->AHL20(2)         <----------DOF2<-- <---------AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(i)--------->ZAT6---------->DOF2  ---------->DOF2   -----   tatattttttgttaggcaatcaacacagacattgttacaacagagaataactctaatataaaataaagacaaaaaatttcaaaagcttttttaaaatatt  5847000        ---------->DOF2 --------->ICU4 -AHL20(2)                                                                                         <X >ARR11(3)                                      --------->AHL20(2)                                <-- >AHL20(1)                               --------->ZAT2                                           --- -AHL20(1)              ----------->GT1  <---------At4g35610                                      --- -------YAB1     <---------AHL20(2)      --------->At4g35610                --------->ANAC46 <------- ------>GT1  <----------DOF2       ---------->DOF2    ---------->DOF2    --------->TOE1(2)   <-------   gtaattcttcaaaagcttttaaaatgttgtaattctacaaagcagctcaactaaataaaagttgcattttgcagacatacgaagtcgctaatttttcaca  5847100                                  ------>NtERF2                                 --------->DEAR3(1)                                 --------->RAP2.3(2)                                 --------->RAP2.3(3)                                <------NtERF2                                --------->RAP2.3(1)        --------->GLK1(2)                               ------>NtERF2           --------->YAB1                              --------->ANAC58         --------->TOE1(3)                           -- XXXXXXXXXXXXXXXXXXXMIR869.1  --------->ANAC58  <---------ANAC46                                   -- -------ARR14(2)        <---------HSFC1(2)      <---------ZAT6                                   ---- ------>ARR14(2)    ----------->GT1          <---------AtMYB61                                   <--- ------>MYB52(1)   --------->ALFIN1          --------->ALFIN1                                  ------ ----GT1    <---------HSFB2a(2)<---------ATERF1(1)     --------->TOE2(3)    ---------->DOF2  -------- ----------AGL1 --------->DAG2--------->ANAC46----------->GT1      <---------ANAC55(2)---------->DOF2   tatcggaattggaccgagaaggtggaaactacgcgcctccatcgagagtggtgtaaaccataatctattacataaaaaaaaagataacaaaagagacgtt  5847200                             <---------CCA1(2)                            ------->TEIL                         --------->ANAC58                         --------->ANAC58         <---------ZAT14                       ------>NtERF2 --------------->AGL15                       <---------TGA2(2)          --------->ZAT14                      ----------->HVH21         --------------->AtSPL3                      ----------->TGA1     <---------TOE1(3)                      --------->DEAR3(1)   --------->MYB59                      --------->WRKY12<----------DOF2                     <----------CDC5 <---------------AGL15                 --------->ANAC55(2) <---------DAG2    --------->ICU4  --------->At4g35610    <---------TOE2(3)                             --------->YAB1 ------->ANAC58  <---------ANAC55(2) --------->TOE2(3) --------->ARR11(3)              <---------ARR11(3) ------->ANAC58  <---------ANAC46   <-----------------AGL3      <----------DOF2        --------->ARR11(3) ------>DOF2     <---------ANAC58   ----------------->AG     <---------ARR11(3)   ---------->DOF2 ------DOF5.7(2) <---------ANAC58   ----------------->AGL3<----------DOF2  <---------ZAT6--------->TOE2(3) --->DOF5.7(2)<---------MYB52(1)    <-----------------AG --------->YAB1  <---------ANAC55(2) --->GT1     <-----------HVH21<-----------ARR10 --------------->AtSPL8   --------->ANAC55(2)        <   aaagcaatgtttctctgttacgcgctgacgcatctctaacctttttaggttctgtactatctttatcttttagtcaagtgttagaaaagtatcttaatca  5847300                                      <------------CBF                                    <---------AHL20(2)                                 --------->AHL20(2)                           <---------RAP2.6(3)                           ------------>CBF                           --------->LBD16                          --------->ANAC46                   <-----------GT1  <---------YAB1                <---------ICU4   <---------AHL20(2)      <---------AHL20(2)                        --                --------->YAB1  <---------AHL20(2)       --------->AHL20(2)                        --           <----------DOF2--------->ANAC58            --------->AHL20(2)                 <---------At4g35610     <---------TOE1(3)    --------->ANAC58       --------->AHL20(2)                      <---------ZAT2  <---------MYB52(1)      --------->RAP2.6(2)    <---------AHL20(2)                      --------->At4g35610 <-------GAMYB <---------YAB1   --------->AHL20(2)   --------->AHL20(2)         --------->GLK1(2)  <- ---------MYB46(3)<---------YAB1<---------AHL20(1)--------->AHL20(2)         ------------>CBF     *TSS   gacggttagggttctttattattactagccgcaatttttttattgaaacaaataaataaaaaaataacccaagaacaacaacaatctggtctgctgatgt  5847400           --------->AHL20(2)     <---------TOE2(3)    ---------->DOF2                                    ----------->GT1   <---------AHL20(2)                                  <----------ID1<---------ANAC58   --------->AHL20(2)                              ---------->DOF2   <---------ANAC46              -- ------->AHL20(2)          --------->ANAC58    ---------->DOF2       <---------ANAC58          ------ ------->ICU4   --------->AHL20(2)      --------->AHL20(2)        <----------DOF2              ------ --------AHL20(2)          --------->ANAC58 ----------->GT1  ---------->DOF2                 --------   attaattaaagaaaaaaataaaacagagcaagaaacaaaaaaaaaaatgtaaagaaagagaaaaaaagctttcgtagtgtctattgaaaccagagaaaag  5847500                                       <---------MYB46(3)                                      <---------AtMYB61                                     <---------ABI4(1)                                     <-------GAMYB                                     <------NtERF2                                    <---------MYB46(3)                                   <---------AtMYB61                                   --------->ALFIN1                                   <---------ANAC46                         <---------MYB52(1) --------->bZIP60(1)                         <-------GAMYB--------->ALFIN1                        <---------DEAR3(2)  <---------bZIP60(1)                      <---------MYB52(1) ----------->HVH21                     <-----------HVH21<---------DEAR3(1)                --------->MYB46(3) <---------DREB2C(2)               ------>MYB46(1)     <---------DEAR3(1)             ------->GAMYB        <------NtERF2                       <------ZmHOX2a(1)             --------->AtMYB61    <---------ABI4(1)                <------ZmHOX2a(1)            <---------MYB52(2)   <---------RAP2.3(1)             --------->ALFIN1                   <            <---------MYB55(2)  <---------RRTF1(3)              <------ZmHOX2a(1)                  <-            --------->MYB46(3)  <---------DEAR3(1)            --------->ALFIN1                     --       --------->ANAC58<---------DEAR3(1)----------->TGA1    <------ZmHOX2a(1)                 <-----       --------->ANAC58<---------At1g77200  <---------O2  --------->At4g35610          <---------ZAT18 -------->DOF2 ------>MYB83     <---------RAP2.6(2)       <------NtERF2                --------->ZAT18 --->ANAC58--------->ANAC46     <---------RAP2.3(2)       <---------At4g35610          --------->ZAT14 --->ANAC58--------->ANAC58    --------->At4g35610     <------NtERF2--------->ALFIN1   <---------ZAT14 -->DOF2   --------->ANAC58--------->MYB52(2)       <------ZmHOX2a(1) ===============================   ccaaaggggatgcaaccaacatccgtcggtagtagcggcggtggtgacgacggaggaggcagaggaggaggaggagggctaagtagaagtggactatctc  5847600        <---------At4g35610        --------->At4g35610                                                                        --        <---------ZAT2                                                                         ------        --------->ZAT2                                                                        <------    <---------MYB52(1)                                                                       <-------    <-----------HVH21              <---------ANAC58                                         -------->P ------>ZmHOX2a(2)     <---------ANAC58                                                     --------- ------ZmHOX2a(2)      <---------ANAC58     --------->At4g35610               ----------->HVH21------ --------ARR14(2)      <---------ANAC46  <------ZmHOX2a(1)          ------>MYB83         <---------ANAC58 ------->ARR14(2) --------->O2     <---------ANAC58                 ------>MYB46(1)      <---------ANAC58 ----LBD16        <---------bZIP60(2)  <---------TOE2(3)          --------->TOE2(3) --------->ARR14(2) ======HOX2a_HOX2a<---------O2 <----------DOF2                    <---------MYB59   <---------ARR14(2)   ggatccgttcagctccagcgacttggcttgaagctttacttgaggaagatgaagaagagtctttgaaacctaatcttggtctcaccgatttgcttaccgg  5847700                          <---------ZAT2                        <---------RAP2.6(2)                        <------NtERF2                        <---------DEAR3(1)                                            ----------->RAV1(1)                    <-----------HVH21                                                ----------->HVH21               >>>>>>>>>>DREB1A                                                      --------->DREB2C(2)     <---------TOE1(2) <---------LBD16          ------>ZmHOX2a(1)                    --------->DEAR3(1) ------->GLK1(1)   --------->O2             --------->ARR14(2)                       --------->DEAR4(1) --->LBD16     >>>>>>>>>>DREB2A             <---------ARR14(2)                       --------->At1g77200 ---LBD16     <---------ETT(1)             <---------GLK1(2)                        --------->DEAR3(2) --LBD16     --------->DEAR3(2)          --------->LBD16                     <------MYB46(1) >MYB52(1)  <---------At5g28300     <---------GLK1(1)                        <------MYB83 --->ANAC46<-----------GT1<------NtERF2 --------->HSFB2a(2)                --------->ALFIN1         <   gaactcgaacgatttaccgacaagtcgcggctcgttcgagttcccgattcctgttgagcaagggttgtatcaacaaggtgggtttcaccgacagaatagt  5847800        --------->GLK1(1)       <---------ARR14(2)       <---------GLK1(2)       --------->ARR14(2)                                                  --------->LBD16      <------NtERF2                                                       <---------LBD16      ------    <---------ANAC46                                                <---------ANAC58           ------   <---------LBD16        <---------WOX13(1)                        --------->ANAC55(2)        <-----  ------>NtERF2        <---------YAB1                               <---------ANAC58          <------  --------->LBD16   <---------ARR14(2)             <-----------RAV1(2)   <---------LBD16     <------- <---------DEAR3(1) --------->ARR14(2)    <----------DOF2           <---------ANAC55(2)<---------HSFC1(2) ---------LBD16   <---------MYB46(3) ---------->DOF2          <---------YAB1           --------->HSFC1(2)   actccggcggattttcttagtggttctgatggatttatccaaagctttgggattcaggcgaattacgattacttatcggggaatatcgatgtttctccgg  5847900  Previous    Next  AGI:  At4g09180.1    Description:  basic helix-loop-helix (bHLH) family protein. similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G35460.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64707.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 5847398    to: 5849721    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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