Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                   --------->TOE2(3)             <---                                                                   <---------MYB59               ----                                                     <-----------GT1                           ------                                     <-------MYC3  --------->HSFC1(2)                    <-----------GT1                            --------->AHL20(2)     <---------HSFC1(2)                    --------->YAB1                         <---------AHL20(2)        <---------HSFB2a(1)   <---------AHL20(2)   <------                ----------->GT1      ------->MYC3  --------->HSFB2a(1)   --------->AHL20(2) ---------        --------->YAB1  --------->AHL20(2) --------->ATHB12        --------->TOE1(3)  --------->YAB1- ->GT1 <---------YAB1 --------->TOE2(3)   <---------YAB1     <-----------GT1       <----------DOF2<--   attcaacttataataagatggtcacattaaataaaaacacatgtatgattagaaatttccattttacaacctaaattatatgtctcttttataacaataa  5839300          ----------->GT1     <---------ANAC58     <---------ANAC58 -------->HAHB4 <---------ICU4 ------>YAB1 ------YAB1 ----->ICU4 --->YAB1----------->GT1                                                <---------ANAC58      ------- ---ATHB51<-------GAMYB        <-----------GT1                          <---------ANAC58      ------- >YAB1   <---------MYB46(3) <----------DOF2   <---------MYB52(1) <---------------AGL15    <---------HSFB2a(2) -------->ICU4       --------->DAG2      <-----------GT1         --------------->AGL15    --------->HSFB2a(2) -------ICU4        ---------->DOF2  <---------AHL20(2)--------->HSFB2a(2) ----------->GT1<---------HSFC1(1)   taataatgcgtctgttaaaaaaaaaagcgtcttttacattttataacccttggtcttctctaacttgctaaattgagtgctaaaacaatattcgagaagc  5839400                            <----------DOF2               --------->ARR14(2)               <---------ARR11(3)                                                      --------->At4g35610               --------->ARR14(3)                            ----------->RAV1(2)    <---------MYB52(1)               --------->ARR11(3)             --------->TOE1(2)             ---------->DOF2               --------->GLK1(2)            --------------->AtSPL3        <---------YAB1 -->ANAC58     <-----------ARR10            <---------------AtSPL8        <---------HSFB2a(2) -->ANAC58     <---------ARR14(3)           --------------->AtSPL8        --------->HSFB2a(2)      --   attcttgtactcaccaaaatcttcacatttcttttgtttacaaataaacgtactaacaattcaacctggaaatgttctgaaagaccattagctaaaccca  5839500                                                                      --------->DAG2                                                                 <---------AHL20(2)                                                                 --------->AHL20(2)                                                                --------->AHL20(1)                                                                <---------AHL20(1)                                <---------MYB46(3)              --------->AHL20(2)                  -                                --------->MYB111(1)             <---------AHL20(2)            -------                                --------->MYB52(2)           <---------AHL20(2)            ----------                                --------->MYB46(2)           --------->AHL20(2)          <-----------                  --------->ARR11(3)                         <---------ICU4              --------->TOE2(3)            ------->TEIL        --------->MYB111(2)          <--------ATHB1              --------->TOE1(3)         --------->ANAC58      <--------P                    --------->ATHB51            <----------DOF2         --------->ANAC58 <----------DOF2                   --------->ICU4               ------------   --------->CCA1(2)<---------ICU4 <-----------GT1          <---------YAB1               ============ --------->AHL20(2)<------ZmHOX2a(2)                      --------->YAB1        ----------->GT1  <--- ------->AHL20(2) <---------ARR11(3) --------->REM1(1) --------->YAB1---------->DOF2 --------->REM1(1)   aaaatatatgcacgaacatagatcattactttggtagttacaacttacaacttagtagcataataatttaataaagtactactggttacaactttaaaaa  5839600                --------------->AGL15                <---------DAG2                <---------------AGL15       --------->ARR11(3)                                                       *TSS    <------ZmHOX2a(1)   <------ZmHOX2a(1)                                   <---------WRKY18(1) --------->DOF2 <----------DOF2                                            --------->WRKY38(1) --->DOF2      <-----------------AGL1                               ------>ZmHOX2a(1) ->TBP <---------ARR11(3)     <---------DAG2                    <---------GLK1(1)    ------>ZmHOX2a(1) ----AGL15     <-----------------AGL3  ----------->GT1    <------------CBF --------->WRKY45 --->AGL15<----------DOF2     <----------DOF2          ----------->RAV1(1) --------->WRKY12       <-- ================================MADS_MADS             <---------ALFIN1  <----------DOF2    --------- -------ID1  <-----------GT1<---------At4g35610   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   -------->P   ggaaaaggacatcttttactttattaggacagctttttgagttgtaaatttagagcccaacattggattcctcttctttgaccattcctctctacctgaa  5839700                                                                                         ------>NtERF2                                                                                        <---------ALFIN1                                                                                        --------->DEAR3(1)                                                                                       --------->ATERF1(1)                                                                                       <------NtERF2                                                                                      ------>NtERF2                                                                                      <---------ATERF1(1)                                                                                      --------->ABI4(1)                                                                                     --------->RAP2.3(2)                                                                                     --------->RAP2.6(2)                                                                                     --------->RAP2.3(3)                                                                                     --------->ANAC58                                                                                     <---------ATERF1(2)                                                                                     --------->DEAR3(1)                                                                                     --------->DREB2C(2)                                                                                     --------->ANAC58                                                                                     --------->ANAC46                                                                                     --------->ATERF1(2)                                                                                     --------->RRTF1(2)                                                                                     --------->RRTF1(3)                                                                                    --------->RAP2.6(1)                                                                                    --------->RRTF1(1)                                                                                    --------->ATERF1(1)                                                                                    --------->ERF1                                                                                    --------->ORA47(2)                                                                                    --------->RAP2.3(1)                                                                                   ------>NtERF2                                                                                   --------->LBD16                                                                 --------->GLK1(2) --------->At4g35610                                                                --------->ARR14(2) <---------At4g35610                                                                --------->ARR11(3) --------->ABI4(1)                                                                <---------ARR14(2) <---------ATERF1(1)                                                                <---------ARR11(3)--------->DEAR3(1)    <---------MYB52(1)                             <---------AHL20(2)             --------->ANAC46---  ----------->GT1          <<<<<<<<<TBF1           --------->AHL20(2)    --------->MYB46(3)       --- ---------GT1         <----------DOF2           --------->YAB1  <---------GLK1(2)<---------LBD16 ---- >TOE2(3)         ---------->ID1<----------DOF2 --------->AHL20(2)       <---------MYB111(1)<--------   taacccgttaatctctctctgtccctttcttcttcttttttcaagaacaataaaaaaatgtctcaagattctgcaactactactccgccgccacctttaa  5839800    --------->O2    <---------O2   <---------TOE1(2)                                                                             <---  ------>NtERF2                                                           <---------LBD16       ----- ----------->HVH21                                                   ----------->HVH21        ------- --------->DEAR3(1)                                                 <---------MYB52(1)     --------->At4g35610 ------>TOE2(2)     --------->LBD16                                 <-----------HVH21      <---------At4g35610 ------>TOE1(2)   <---------LBD16                                <------NtERF2      --------->GLK1(2) ----->MYB46(3)  --------->MYB52(1)        ----------->GT1      --------->MYB52(1)  --------->ARR14(2) --DOF2         <---------SPL7       ---------->DOF2          <---------ABI4(2)     <---------ARR14(2)   cctccgacgtttcaatgccttccggtgaagaagatgagccaaagcatgtaacatcggaagaagaggcaccggtgacttcggagacaaatctgaagctacc  5839900                                                             <------NtERF2                                                            --------->LBD16                                                           <---------ANAC46                                                           --------->DEAR3(1)                       -                                                          --------->ATERF1(1)                       -                                                          <---------LBD16                           <                                                          <------NtERF2                             <                                      <--------P         ------>NtERF2                            <--                                     <-------GAMYB       <---------RAP2.3(1)                     <---                                    <---------MYB46(3)  <---------bZIP60(1)                      ----                                   <---------AtMYB61    <---------bZIP60(2)                     -----                                <---------DEAR3(1)      --------->bZIP60(1)                     <----         <---------ZAT2        <---------LBD16          <---------O2                            -----         --------->ZAT2      --------->ANAC46          --------->ATERF1(1)                    -------       <------NtERF2        --------->SPL7            <---------ATERF1(1)                     <------      --------->LBD16    --------->YAB1              ----------->TGA1                 <---------ARR11(3) -------DOF2     ----------->GT1<---------ANAC46     --------->ALFIN1                 --------->ARR11(3) ---->TOE2(3)   <------ZmHOX2a(1) <------NtERF2      ----------->HVH21          <-----------RAV1(2)<- ->P<---------LBD16     <---------ATHB12          --------->DAG2        <----------DOF2      --------   tttgatgccggagctagaggagtcaaatcatacggcggaggttgtttcagagaaggtgacgccggagacgatgactttggagtcagaaggtctcaaccac  5840000       <---------ARR14(2)                                                         <---------ARR14(2)      <------ZmHOX2a(1)                                                          <------ZmHOX2a(1)   <------NtERF2                                                              <------NtERF2 --------->ALFIN1                                                           <---------ANAC46 <---------DEAR3(1)                  ----------->HVH21                      <---------DEAR3(1) <---------ANAC46                   <------NtERF2                          <---------------------WRI1 -------->ATERF1(1)                --------->LBD16                         <---------LBD16 ----->NtERF2                     --------->DEAR3(1)                     --------->ANAC58 ------NtERF2                     <---------ANAC46                       --------->ANAC58 ---------LBD16                  <---------LBD16                         --------->ANAC46 -------DEAR3(1)                ------>NtERF2                            <---------TGA1a ----MYC3                       <---------RAP2.3(1)                      --------->TGA1a --->MYC3                      --------->bZIP60(1)                       --------->O2 ---->O2                       <---------bZIP60(1)                     <---------ALFIN1 -----O2                       <---------bZIP60(2)                     --------->MYB52(1) ---->ANAC46  --------->ZAT14  <---------O2                          ==============MYC_MYB >GAMYB--------->ARR14(2)   ----------->TGA1                         <---------ALFIN1    <---------At4g35610 ---ALFIN1    <---------At4g35610<------NtERF2                       --------->AtMYB61   --------->At4g35610 --------ATERF1(1)          ----------->HVH21                        ------->GAMYB--------->ARR14(2) ->MYB46(3)   --------->At4g35610--------->ATERF1(1)                --------->MYB46(3)   --------->ZAT14   gcggcggaggattcagagcagacacatgaagtgacgccggagacagagactgcgaagctagaggttctcaaccacacggcggaggattcagagcagacac  5840100                                                         <---------ARR14(2)                                                        <------ZmHOX2a(1)                                                     <------NtERF2                                                    --------->LBD16                                                   <---------ANAC58                                                   <---------ANAC46                                                   <---------ANAC58                                                   <---------DEAR3(1)                                                  <------NtERF2                                                  <---------LBD16                                                --------->ALFIN1                                                ----------->HVH21                                               ------->MYC4                                               ------->MYC3                                               <-------MYC3              ==========================================bZIP_DOF              ---------->DOF2                  <-------MYC4                            ----------->HVH21           <------NtERF2                       <-------MYC2                           <------NtERF2          --------->LBD16                      ------->MYC2                          --------->LBD16         --------->DEAR3(1)                    ------->PIF5                         --------->DEAR3(1)         <---------ANAC46                      <-------PIF5                         <---------ANAC46        <------NtERF2                         --------->PIF3(3)                    --------->ATERF1(1)        --------->ATERF1(1)                   --------->O2                        <---------RAP2.3(1)        <---------LBD16                       <---------PIF3(3)                   ------>NtERF2       ------>NtERF2                          <---------O2                       <---------O2       <---------RAP2.3(1)                    <---------TGA1a                    --------->bZIP60(1)      <---------bZIP60(1)                     --------->ANAC46                   <---------bZIP60(1)      --------->bZIP60(1)                     <---------bZIP60(2)             ----------->HVH21      <---------bZIP60(2)                     --------->TGA1a   --------->At4g35610<------NtERF2      <---------O2                          <---------ALFIN1    <---------At4g35610<---------LBD16   ----------->TGA1           --------->YAB1------->GAMYB--------->ARR14(2)   ----------->TGA1      <   ----------->HVH21  ----------->GT1      --------->MYB46(3)   --------->ZAT14  <---------bZIP60(2)-   atgaagtgacgccggagaaagagactgtgaaatcagagtttctcaaccacgtggcggaggattcagagcagacacatgaagtgacgccggagacagagac  5840200  Previous    Next  AGI:  At4g09160.1    Description:  SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein. Identical to Patellin-5 (PATL5) [Arabidopsis Thaliana] (GB:Q9M0R2;GB:Q0WP99); similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana] (TAIR:AT1G72160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71605.1); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains I Range:  from: 5839680    to: 5842391    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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