Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           --------->HSFC1(2)                                                      <------NtERF2         --------->HSFB2a(1)                                                   <---------DEAR3(1)         <---------HSFC1(2)                                                   <------NtERF2         <---------HSFB2a(1)                             --------->SPL7   <-----------HVH21    --------->YAB1                                   --------------->AtSPL8  <-----------HVH21  --------->GLK1(2)              ---------->DOF2     --------------->AtSPL3 <---------DEAR3(1) ------->LBD16 --------------->AGL15               <---------ARR14(2) <---------WRKY18(1) ------------->AGL2  ----------->GT1               --------->ARR14(2)----------->HVH21 ----ARR14(2) ----------------->AG          --------->REM1(2)      <---------ANAC58 --->ARR14(2) ----------------->AGL1       --------->ALFIN1        <---------ANAC58                 -   ccagaatcagaaatttcccaaatttgtgaaattgaaaaagagagtgtgtagaagaaccgtactctaataccgtgaccgtcgtcggagacttgaatgagtt  5820800                                            <------NtERF2                                            --------->ATERF1(1)           <---------ZAT2            ----------->HVH21              ------>NtERF2                  --------->At4g35610          <----------DOF2                  <-----------HVH21              --------->ZAT2      --------->DEAR3(1)                  <---------ANAC46                ----------->RAV1(2)   --------->AtMYB61                      <---------DEAR3(1)        <-----------HVH21  --------->MYB46(3)       --------->HSFB2a(2)                     <----------DOF2  <---------MYB55(2)       <---------HSFB2a(2)                  <---------ARR11(3)    <---------DEAR3(1) -------->ANAC46   ------->GAMYB          --------->DEAR3(1) ------->GAMYB<---------At4g35610   tcaaaccaccgtctttgacaacgacgcttatggaacttgaatcggcgtcgaggctgttctcaacgagctctttcacagctgaaactggacgctggattac  5820900                                                                                    --------->GLK1(2)                                                                                   <---------GLK1(2)                                                                                  --------->HSFB2a(1)                                                                                  --------->GLK1(1)                                                                                 ----------->ARR10                                                                                <------NtERF2                                                                               --------->LBD16                                                                              --------->DEAR3(1)                 --------->WRKY38(1)                                         <------NtERF2                 --------->WRKY12                                            --------->ATERF1(1)               <-------GAMYB                                                 <---------LBD16           --------->CCA1(2)                                                ------>NtERF2          <---------SPL7                                                    <---------ATERF1(1)          <---------ARR14(2)                         <------NtERF2         <---------DEAR3(1)        ----------->ARR10                           ------>NtERF2          --------->DEAR3(1)    ----------->RAV1(2)                             <---------MYB46(3)    <------NtERF2    <---------ZAT2                                  --------->ABI4(2)     --------->ATERF1(1)      --    --------->ZAT2<---------WRKY18(1)              <---------DEAR3(1)    <---------ATERF1(1)    <----    <---------At4g35610                           <---------MYB52(1)     <-----------HVH21    ------>ZmHOX2a(1)    --------->At4g35610                         <---------DEAR3(1)      <---------DEAR3(1) ------>ZmHOX2a(1)  --------->MYB46(3)      <---------GLK1(2)------->TEIL              --------->YAB1<---------ARR14(2)   ttcaccagctgcgatacggttgactactgattcttctaagcgttgaatcttcggtggctctctcggtacaatcgtcgtcgccggagattcttcctcctcc  5821000                                       <---------At4g35610             <-----------------------TaNAC69(2)                      <------------CBF           <----------ID1              --------->At4g35610       <-------TEIL      --------->At5g28300            <---------LBD16            --------->CCA1(2)      <---------SPL7      --------->YAB1                       <---------ARR14(2)                   -   --------->LBD16       ===============HOX2a_HOX2a            --------->ARR14(2)              ------   ------>NtERF2 ------->TEIL     *TSS --------->LBD16     <------NtERF2              ------------>CBF  --------->ANAC46       ==================HOX2a_HOX2a    ------>NtERF2 --------->MYB59       <------  --------->DEAR3(1)     <------ZmHOX2a(2)                ----------->RAV1(1) <---------At4g35610 <-- <---------LBD16 <---------ARR14(2) ------>ZmHOX2a(1)    --------->ANAC58     --------->At4g35610 <-- ------->ARR14(2)--------->ARR14(2)<---------ALFIN1      --------->ANAC46<---------ANAC58   --------- -----ALFIN1--------->CCA1(2)    ------>ZmHOX2a(1)       --------->ANAC58<---------ANAC58  --------->YAB1   atctccgccgtaagagacgaatcgtcgatcatctcctcctccgcagaaactaaaacctcgcgccagatacaaattgggtctgcttaagcccaattagatt  5821100                                   <---------YAB1                                   --------->ATHB12                              ----------->GT1                                      <---------ATHB12     --------->ZAT18         <---------TOE1(3)              ---------->ID1         --------->ICU4     <---------ZAT18         <---------TOE2(3)          <----------DOF2 --------->ZAT2 --------->DOF2        <---------AHL20(2)              <---------DAG2   --------->At4g35610 --->GLK1(2)           --------->AHL20(2)        --------->REM1(2)      <---------ZAT2 ---GLK1(2)           <---------AHL20(2)        <---------ANAC46  <-----------------AGL1 -------YAB1          --------->AHL20(2)      <---------ANAC46 <----------DOF2--------->ANAC58 -------HSFB2a(2)     <---------AHL20(1)     <------NtERF2  <-----------GT1   --------->ANAC58 -->ARR10             --------->AHL20(1)  ---------->ID1<---------DAG2  <---------At4g35610    ------   ctgaaagcccactagtggcccaaatttatttagggttataatttgtcgtcgtgtatacctttttcctttccctaagctgcaagaaatcattcgttgtgaa  5821200                                                     <------ZmHOX2a(2)                                                    <---------ARR11(3)                                                    --------->ARR11(3)                     ------>ZmHOX2a(2)             <---------GLK1(1)                   <---------ARR11(3)              --------->GLK1(1)         --------->YAB1                          <------ZmHOX2a(1)        ----------->TGA1                      <---------HSFB2a(2)                 ---------->DOF2    ------------>CBF ===================================HOX2a_HOX2a             <---------YAB1 ---->DOF2 *TSS    --------->ARR11(3)        ------>ZmHOX2a(2)       <----------DOF2    --------->At5g28300   agttgaaacaatgacgacgatgatctacaatcttccaagggatttgatcgaggagatcatttctagggttcctttgaaatctatgaaagcggtgagatta  5821300                                                                        -------->P                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                          --------->DAG2------>MYB83                                                         ---------->DOF2------>MYB46(1)                                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            -                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <                                                 ------->TEIL           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   <--                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      ---                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                     <---                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     -----                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      <----                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                    -------                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxsmallRNA(i)                                    xxxxxxxxxxxxxxxxxx>smallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)----------->RAV1(1)    <------                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)  --------->AtMYB61     ---------                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                             --------->ALFIN1  <-------TEIL----------->GT1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                            xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------bZIP60(1)        <---------YAB1                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->bZIP60(1)    xxxxxxxxxxxxxx                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          --------->DAG2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxx                         ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->CCA1(2)------   acttgcaaaacttggaacaatttatccaaaagtgagggttttacgaagatgcacattggtaaagtgacaacaccaacaagagatggagagactatgatga  5821400   <---------YAB1 --------->YAB1 <---------ICU4 -------->ICU4 ---------YAB1 -------ICU4 ------>YAB1 ------YAB1 ---->ARR11(3)                         <------NtERF2 -----ARR11(3)                       <---------ANAC46 -->ICU4                            <------NtERF2                          <---------DAG2 ---YAB1                           <-----------HVH21                       <----------DOF2          - >YAB1                         <---------DEAR3(1)                      <---------WRKY38(1)          < xxxxxxxxx>smallRNA(si3)      --------->At4g35610                ---------->DOF2           <---------ANAC55(2) x>smallRNA(se3)        <---------AHL20(2)  <----------DOF2 <---------TOE2(3)      --------->YAB1  <- --->YAB1         <----------DOF2 --------->ALFIN1------>ZmHOX2a(2)    <---------WRKY12 <---------ATHB12   tcatgatgatgcctcacaaactttgtttaatgagcggtgtcgtcgactttgatccatctatagaggttaaaggtcaacttttcattcacaatcaagtgag  5821500                                                                                       <------NtERF2          <-----------GT1                                                             ------>NtERF2       <---------ARR11(3)            ------->TEIL                               --------->ARR14(2)       --------->ARR11(3)   ---------->ID1                                      <---------ARR14(2)       --------->AHL20(1)  <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 --------->ANAC55(2)       <---------AHL20(1)  <-------GAMYB                                  <---------ARR14(2)       <---------ICU4      <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <xxxxxxxxxxxxxxxxsmallRNA(se3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) ---------->DOF2                --------->ARR14(2) -------->ARR11(3)        <---------MYB46(3)                     <---------AtMYB61  <---------ANAC46 ---------ARR11(3)        --------->MYB52(2)               <---------TOE2(3) <---------ANAC55(2) ---- --------CCA1(2)<----------DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  xxxxxxxxxxxxxxxx>smallRNA(i)   tatatctaatattttccactttgagggtttgttgttatgcatcttgaaagacgacgttactagggttttggtttggaatccgtattgggggcatacaagg  5821600                                                                                    <---------TOE1(2)                                                                                    ------->TEIL                                                                                  <---------SPL7                                                                                 <---------ANAC58                                                                                 <---------ANAC58                                                                                <---------------AtSPL3                                                                          --------->GLK1(2)           --------->ARR14(2)                                            <---------GLK1(2)         <-           <---------MYB52(1)                                           <------ZmHOX2a(1)        ----      --------->TOE1(2)                                               --------->ANAC58           ----      --------->TOE2(2)                                               --------->ANAC58          xxxxx      ------->GAMYB                                                   <---------TOE2(3)      --------     --------->MYB46(3)                                             --------->CCA1(2)  <----------DOF2    ------->TEIL      ------->GAMYB                                --------->ARR11(3) --------->TOE2(3)    -------->P        --------->TOE2(2)                     --------->CCA1(2)   --------------->AtSPL8 <------ZmHOX2a(2)    --------->TOE1(2) <------MYB83       --------->ARR14(2)   ---------->ID1 ------ ----->ALFIN1        --------->MYB46(3) <------MYB46(1)    <---------ARR14(2)   --------------->AtSPL3   tggatcaacctccgatattctcaacctccgaatggatttgataggtttagttatgctcttggatacgaagataaggaatcttgtcgtacctttaagttcc  5821700  Previous    Next  AGI:  At4g09140.1    Description:  ATMLH1 (ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1). similar to DNA mismatch repair protein, putative [Arabidopsis thaliana] (TAIR:AT4G02460.1); similar to MLH1 [Solanum lycopersicum] (GB:ABO07413.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ72246.1); similar to hypothetical protein OsI_005153 [Oryza sativa (indica cultivar-group)] (GB:EAY77306.1); contains InterPro domain DNA mismatch repair protein, C-terminal; (InterPro:IPR013507); contains InterPro domain DNA mismatch repair protein Mlh1; (InterPro:IPR011186); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro doma Range:  from: 5816939    to: 5821034    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g09143.1    Description:  pseudogene, type 2 peroxiredoxin -related, similar to type 2 peroxiredoxin, putative Range:  from: 5821211    to: 5822440    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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