Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             ------>NtERF2                              <---------MYB52(1)           ----------->RAV1(1)                       ----------->GT1          --------->ANAC46                          --------->HSFB2a(2)          <---------ETT(1)                          <---------HSFB2a(2)                   <----------DOF2          --------->LBD16 --------->ANAC55(2)    ------>ZmHOX2a(1)               <---------GLK1(1)   <---------GLK1(2)    <-----------GT1     <---------At4g35610             <----------DOF2   aatttgattctcccgacaaaagttttttacttaatataacatgtgaagctccttctggtaatttagagaaatggtagcctttgatttctcacctttgagt  5815400                   ------>ZmHOX2a(1)                                                             <---            --------->ARR11(3)              <-----------GT1                                    ------            <---------ARR11(3)          <---------ARR11(3)                  --------->ETT(2)   <-----        <---------ANAC58                --------->ARR11(3)              <XXXXXXXXXXXXXXXXXXXXMIR2937        <---------ANAC58        ------>ZmHOX2a(1)                      <----------DOF2    <-------GAMYB        <---------AtLEC2       --------->TOE2(3)--------->ANAC46       <---------DAG2     --------->At4g35610    <----------DOF2<----------DOF2     --------->YAB1             --------->LBD16         <---------At4g35610   ttttgactttgcatgatcatccttttttgttttcctcaaaatgatattacaccctaattcaatgtttccgagactttttcgacagttttttcagttgtct  5815500                                                        --------->AHL20(2)                                           --------->ANAC55(2)                   --------------->AtSPL8                                           <---------ANAC58                     <------------CBF        <------ZmHOX2a(1)                  <---------ANAC58        <------ZmHOX2a(1)     <------ZmHOX2a(1)                     <---------ANAC46<---------YAB1--------->ALFIN1 ------REM1(2)                             <---------ANAC55(2)   <XXXXXXXXXXXXXXXXXXXXMIR835-5P    <- --->ETT(2)  ----------->GT1    --------->DAG2        ----------->GT1   ------->MYC3         -------- ----ETT(2)  <----------ID1    ---------->DOF2   <---------WRKY38(1)    <-------MYC3         <-------   acaagtaggaggaataggtcaaaactgtctggataaagtctagttgcgtagtcaacaagttaatatagaggacatgtgtgagaattgtacttgtacttgt  5815600                                                                        --------->YAB1                                                 --------->ATHB12 <---------ARR11(3)                                                <---------ATHB12 <---------CCA1(2)                 <-                                                <---------YAB1  <---------AHL20(1)                <--                                     <----------ID1             <---------ARR11(3)                <-- ---------DOF2---------->DOF2       --------->DAG2        <---------MYB59      <---------TOE2(3)  <-- ------->AtSPL8                   ---------->DOF2<---------ICU4 --------->ARR11(3)          <-------- --------AtSPL3            <---------MYB46(3)   --------->ICU4  --------->AHL20(1)  ------------>CBF-   acttttaaaactttttaaaagtcaaaacgttgttggaaaaggccaaactaatcattcggaccaaaatatatctaacatattaagaatacaatatttgttg  5815700            <---------YAB1          <------ZmHOX2a(2)         --------->ARR14(2)         <---------ARR11(3)         --------->ARR11(3)         <---------ARR14(3)         <---------AGP1         <---------ARR14(2)         --------->AGP1         <-----------ARR10         --------->ARR14(3)        <---------CCA1(2)       ----------->ARR10    ------>NtERF2   <---------ATERF1(2)   --------->ATERF1(2)  <---------ANAC58  <---------ANAC46  <---------ANAC58 --------SPL7                              <-----------RAV1(1) -------ANAC58                 <---------GLK1(2) -------ANAC58       <---------HSFB2a(2)  <---------TOE2(3) -------ANAC46<------------CBF --------->ARR14(2)                                   --------->MYB52(1) ---RAV1(1)------>ZmHOX2a(2)   <---------ARR14(2)                          <---------ANAC58       --- -------->ALFIN1     --------->HSFB2a(2)<---------AHL20(2)---------->ID1   <---------ANAC58       <--   tcgtgcgggcagatcttattgttctacaaatcagatttgtattttatgttgaacgacttcgtcttcttctctatctcgcttgcgctaaacggagacatgg  5815800                                                                                     <-------MYC2                                                  --------->YAB1                     ------->MYC3                                           <---------YAB1                            <-------MYC3                                         --------->YAB1                      ------>ZmHOX2a(2)                                       --------->ARR11(3)                   <------ZmHOX2a(2)                                       <---------ARR11(3)                  <-----------ARR10                <-----------TBP  --------->At5g28300          <---------GLK1(1)      ------->MYC2                --------->AHL20(2)<---------MYB52(1)          --------->GLK1(1)------>ZmHOX2a(1)         ------>ZmHOX2a(2)      ----------->GT1 --------->ARR11(3)         <---------ARR14(2)      <-   --------->ANAC55(2)       --------->ARR14(2) <---------ARR11(3)         --------->ARR14(2) <------ ------>At4g35610            <---------ARR14(2) <---------ARR14(2)    --------->MYB52(1)  <---------AHL20(2) -------At4g35610        --------->At4g35610    --------->ARR14(2)  --------->MYB46(3)   <----------DOF2   agctcaagtgatcgaccattatatagcagaagaaccgttaatatcatgactatcttcacaagagatttcagccatcggatcctagcatgtgttttattgc  5815900                                     <---------ZAT2                                     <------NtERF2                                     --------->ZAT2                                    --------->ANAC58                                    --------->ANAC58                                   --------->ATERF1(2)                                  ----------------->AGL1                              <---------ANAC58                          <---------MYB59                         <---------ANAC58                         --------->ANAC58                         --------->ANAC55(1)                         <---------ANAC58                         --------->ANAC55(2)                         <---------ANAC55(2)                         --------->ANAC46                              ----------->GT1                         --------->ANAC58    --------->ETT(1)         --------->DAG2             ====      <---------DAG2  <---------SPL7--------->ANAC46                 ---------->DOF2    --------->ATHB12      <----------DOF2<---------DAG2<---------ATERF1(2)     --------->RAP2.6(2)         <---------YAB1 --------ALFIN1      <----------DOF2------>NtERF2    <---------At4g35610               <---------ATHB51 -----GT1     <---------ATHB12<---------ANAC58       --------->At4g35610  ---------->DOF2        ----   cactcttccttttccaatgtttgccttacgtaacttgccagcaagggtcggaatcagcaggtcgcaatggaaaaagtaaagagtcatcgataattgggat  5816000          <---------MYB52(1)  <---------MYB46(3)         <-------GAMYB       ---------->ID1     <----------DOF2      <---------AtMYB61        ------->TEIL                          ----------->GT1    <---------ANAC58   <---------DAG2           <---------TOE2(3)                        <---------ZAT6    <---------ANAC58   <----------DOF2 <---------ANAC58                                  --------->ALFIN1 =======================HOX2a_HOX2a    <---------ANAC46                      <------ZmHOX2a(1)      - -->ZmHOX2a(2)   ------>ZmHOX2a(1)     <---------ANAC58                   <-----------RAV1(2)       <   cgttttgctttcgttgttcctcttacttttggtcgtttattgcttaaactatggatgttgtattgaagagaatgagacaggaggtcatgaagtgttacac  5816100                                                                                           <------NtERF2                            --------->TGA2(2)                                             --------->LBD16           --------->ALFIN1<-----------HVH21                                             <---------DEAR3(1)           <------NtERF2  --------->ANAC58                                               <---------ANAC46         --------->ALFIN1 --------->bZIP60(2)       <---------------AGL15               <---------LBD16         <---------ANAC58 --------->ANAC58          ------>ZmHOX2a(1)                  ------->GAMYB         <---------O2     --------->bZIP60(1)  --------->GLK1(1)                      --------->MYB46(3)         <---------TGA1a<------ZmHOX2a(1)   --------->LBD16                           <---------DEAR3(1)         <---------ANAC46 <---------bZIP60(1)  <----------DOF2                      --------->MYB52(1)         <---------ANAC58<-----------STF1   ------>NtERF2                          <---------WRKY38(1)         =========================================bZIP_DOF                       --------->ANAC58    --------->ALFIN1  --------->ANAC58     <---------RAP2.6(2)                 --------->CCA1(2)  <---------ZAT6      --------->ANAC58    <---------LBD16                     --------->ARR14(2) -------->ZAT14  ----------->HVH21     <----------DOF2                        <---------ARR14(2) ---------ZAT14 <---------WOX13(1)     ------>ZmHOX2a(1)          ---------->DOF2--------->ANAC58   agtagagtgaggcgtgggattgacaaggacgtcatcgagtcctttccggctttcctatattcagaggttaaagcgttcaagataggcaacggcggagttg  5816200                                             <---------MYB46(3)                                      <---------MYB52(1)                                     --------->At4g35610                                    >>>>>>>>>AtERF-4                                    --------->RAP2.3(2)                                    --------->RAP2.6(2)                                   --------->RAP2.3(1)                                 <---------TOE2(3)                                 --------->ARR14(2)                                   >>>>>>>>>WRKY18                                 <---------ARR14(2)                      --------->AtLEC2                               ---------->DOF2           --------->REM1(2)  <---------YAB1                               ----------->ARR10    ------>NtERF2  <----------DOF2   ----------->HVH21   aatgtgcaatttgtctatgcgagtttgaagacgaagagccgctacgttggatgcctccttgtagccatactttccatgctaattgcattgacgaatggct  5816300  Previous    Next  AGI:  At4g09130.1    Description:  zinc finger (C3HC4-type RING finger) family protein. Identical to Putative RING-H2 finger protein ATL4D precursor (ATL4D) [Arabidopsis Thaliana] (GB:Q9M0R4); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G09120.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABD32383.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 5815846    to: 5816919    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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