Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  ------>MYB46(1)                                                                     --------->GLK1(2)     --------->TOE1(3)                                                                   --------->KAN4(1)       --------->TOE2(3)     <-----------GT1                                               <---------KAN4(1)<---------ANAC55(2) -------->GT1           <---------AHL20(2)                        <---------KAN4(2)<-------TEIL ->GLK1(1)              --------->AHL20(2)                   <---------ANAC46--------->ANAC58 >ARR14(2)            <----------DOF2                     <-----------RAV1(1)--------->ANAC58 -ARR14(2)   <----------DOF2                              <---------------AtSPL8------>MYB83 --------   tagttatataccatactttgaaggctttaattagttactcatatgatgtaaacatttgttatggtgcgaataatctagcaccaaatacataaaccttatt  5812100                                                             <------MYB46(1)                                                             <------MYB83                                                             ----------->GT1                                                        <------ZmHOX2a(1)                      <-----                                                       --------->ICU4                         -------                                                      <---------TOE2(3)                  <---------ANAC58                                                     --------->YAB1                      <---------ANAC58                      <---------ANAC46              <---------ATHB12                <-----------RAV1(1)                      <---------ANAC58       ----------->HVH21               ---------->DOF2  <------  <-----------HVH21   <---------ANAC58      <---------WOX13(1)        <-----------RAV1(1)<---------ANAC46 ->ATHB12           <------ZmHOX2a(1)    ----------->HVH21  --------->MYB59 <xxxxxxxxxxxxxxxxsmallRNA(i)   ggtccgtcacattccattgagaggacgtgaacatcagagggatgtgactgaccaataaggattaggtcaaaactgttggaaaagtcttgttgcgtagatc  5812200                                                        ---------->DOF2                                                     <---------ANAC46                                                     <---------ANAC58                                                     <---------ANAC58                                                     --------->ANAC55(2)                                                     <---------bZIP60(1)                                                     --------->bZIP60(1)                    ---------   --------->AHL20(2)                                <---------ANAC55(2)                    <-------- ----------->GT1                                     ----------->GT1                        --------- -ZmHOX2a(2)                                    --------->YAB1                  --------->TOE2(3)  -- -->ARR11(3)               <---------------AtSPL8 ----------->TGA1              --------->TOE1(3)  <- ---ARR11(3)      --------->ICU4              <---------ZAT14        ---------->DOF2   <------ZmHOX2a(1)   aacaagttaatagagagggcatgagtaatgtagtacttgttctacgtctatagtgacgtaaagacttcttcaaaagtcaaaacgttagaggaagaagcca  5812300    -------->ATHB1                                              <---------------AtSPL8    <------------ATHB5                                         <---------ANAC46    --------->YAB1                                             <---------bZIP60(2)    <---------ICU4                                          ----------->TGA1                      ---   <---------ATHB12                                       <---------ANAC58                       ---- --------->WOX13(1)                                       <---------ANAC58                    ------- >ANAC58                                             <------------CBF                        <------- --ID1       --------->AtMYB61              ------------>CBF----------->HVH21                -------- >ANAC58 <---------ETT(1)       --------->YAB1    <---------ANAC55(2)                      --------->YAB1 ---------->CBF             <---------------AGL15 --------->ANAC55(2)  --------->ANAC46   <---------YAB1 --------ATHB12             XXXXXXXXXXXXXXXXXXXX>MIR849   <---------ANAC46              <---------ZAT6   aatcaatcattccgaccaaaactaatctaactaaacatagtagtaatacaatatgtattgtcgtgacgagtacaaaccaaaatgtgtttagtattataaa  5812400                                                        <---------MYB46(3)        <---------YAB1   <----------DOF2                                   --------->DEAR3(1)      --------->ANAC46  <---------ANAC46                                 <---------At5g28300    <-------TEIL  <---------ANAC58                               --------->MYB46(3)      <-----------HVH21  <---------ANAC58                         --------->ANAC55(2)         <---------DEAR3(2)           < ------>RAP2.6(3)                     <---------At4g35610       ---------->DOF2 <---------ICU4      - ----->MYB52(1)                       --------->At4g35610 <--------P   <---------MYB46(3)          -- -->YAB1                             ------->TEIL==========================HOX2a_HOX2a             <- --YAB1    <---------ARR14(2)      ---------->DOF2<---------ALFIN1    <---------DEAR3(1) --------->ARR14(2) --->TBP   --------->ARR14(2) <---------ALFIN1   ------>ZmHOX2a(2)  <------ZmHOX2a(1)    <---------ARR14(2)   aacggcttgttcgtattctcttctctcgctcaacacatgaagctcaagtgatccaccgtggttagcaaaaggacggttcacatcatgactatattcgcga  5812500                                                                            <------NtERF2                                                                           --------->ANAC58                                                                           --------->ANAC46       ---                                                                           ------>NtERF2          ---                                                                       --------->ANAC46           ---             <------ZmHOX2a(1)         <----------DOF2                 --------->ANAC58       -------  ------>ZmHOX2a(2)           <-----------RAV1(1)                  <-----------GT1            <------  ==================HOX2a_HOX2a      <---------At4g35610        <---------ANAC55(2)     --------->GLK1(2) <------ZmHOX2a(2)       --------->HSFB2a(1)             <-----------GT1   --------->ANAC58 --------- ===================HOX2a_HOX2a      ------>NtERF2  <---------MYB52(1) --------->ANAC58 --------->ARR14(2) ---------ARR11(3)      <---------TOE2(2)       ---------->ID1  --------->ANAC55(2)     <---------ARR14(2) -------->ARR11(3)      <---------TOE2(3)   <---------ANAC58<---------DAG2--------->ATERF1(2) ------- ------->GLK1(1)        <---------TOE1(2)   <---------ANAC58--------->TOE2(3)          <---------GLK1(2) --------GLK1(1)------>ZmHOX2a(2)  <---------RAP2.6(2)<---------MYB46(3)  <---------ATERF1(2) -------   gagatctcatctataggatcgaaacgaaggttttgttgccgctcttccttgtccatttgttaccttatgtaacatgccagcaagagtcagaatccgtaga  5812600                                          <---------ICU4                                          --------->YAB1                                          -------->ATHB1                                          <--------ATHB1                                          --------->ATHB12                                    --------->YAB1 ------>ANAC58                 --------->At5g28300                                           -------- ------>RAP2.6(2)          --------->MYB52(1)    <---------ANAC58                      <---------ANAC58 ------>ANAC58            <---------ARR14(2)     <---------ANAC58                      <---------ANAC46 -->ETT(2)                --------->ARR14(2)   <---------YAB1                          <---------ANAC58 ---ETT(2)              ------->GAMYB    <---------ATHB12                        <---------TOE1(2) >LBD16                --------->ANAC58  --------->ICU4                         <---------ANAC58 -->WRKY38(1)          --------->ANAC58  <---------YAB1 --------->ICU4          <---------ANAC46 -->WRKY12           --------->MYB52(1)--------->WOX13(1)   <-----------GT1     <---------ANAC58   ccgcaatagaaaaaccaatttcccaacggaaacggtaatcgcaatcattgtgcttgcaatatttatctcattaagcatggtcgcttgtttcttgcacaaa  5812700                                                                  <---------HSFB2a(2)                                                              <---------PCF2                                                             <---------DEAR3(2)                           --------->ANAC58                 <---------DEAR3(1)                       ------>NtERF2                       <------NtERF2                      <---------RAP2.6(2)                  --------->ALFIN1                      <---------DEAR3(1)                 <---------O2                      --------->ATERF1(2)                --------->ALFIN1                      <---------ATERF1(2)                <---------ANAC58                --------->ALFIN1                         <---------TGA1a              <---------MYB46(3)                         <---------ANAC58             <---------AtMYB61                           <---------ANAC46                           -         <---------ZAT14   --------->ANAC58     ===================bZIP_DOF                     <----         --------->ZAT14<------NtERF2           ---------->DOF2   --------->HSFB2a(2)  <----------DOF2      ---------->DOF2--------->ATERF1(1)    --------->ZAT6 --------->ATERF1(1)         ------>ZmHOX2a(1) ->ANAC46<---------At4g35610         --------->ALFIN1    =========================================bZIP_DOF   acattctatagagcagaggttgaggcggcaagccaagaagtgtttcacagtagagcgaggcgtgggctcgagaaggaactcgttgagtcctttccaattt  5812800                                        <---------ANAC46                                       <------NtERF2                                      --------->LBD16                                    <---------LBD16                                  --------->DAG2                                ---------->DOF2          <---------MYB46(3) --------->ANAC58         <---------TOE2(2) --------->CCA1(2)         <---------TOE1(2)<---------ARR14(2) ----->ZmHOX2a(1)         --------->ARR14(2)                                        --------->ZAT6  - -------GT1   ---------->DOF2--------->ANAC58                                ---------->DOF2 <-------   tcctctattcggaggttaaagggctcaagataggcaaaggcggagtagaatgtgcaatttgtctaagcgagtttgtggataaagaaacactacgttggat  5812900                                                                                <-----------ARR10                                                                                --------->GLK1(2)                                                                                <---------ARR14(2)                                                                                --------->ARR14(2)                                                                               <---------CCA1(2)                                                                     <----------DOF2                                                                    <---------ANAC58                                                                    <---------ANAC58                                                                 <---------RAP2.6(2)                                                                <---------LBD16<---------GLK1(1)                     --------->AtLEC2                       <-------MYC3   --------->AtLEC2     --------->REM1(2)  <---------YAB1<-----------RAV1(1)   ------->MYC3 <---------ANAC46         <-- ----->NtERF2  <----------DOF2        --------->ALFIN1  <---------ZAT18  <---------ANAC58        ---- --MYB46(3) <---------ALFIN1        <---------ANAC46    --------->ZAT14  <---------ANAC58      <-----   gcctccttgtagccacactttccatgctaattgcattgatgtgtggctctcttctcagtccacatgtccggcttgtcgtgcaaatctgtctctcaaaccc  5813000  Previous    Next  AGI:  At4g09110.1    Description:  zinc finger (C3HC4-type RING finger) family protein. Identical to Putative RING-H2 finger protein ATL4B precursor (ATL4B) [Arabidopsis Thaliana] (GB:Q9M0R6); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G09120.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61662.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 5812485    to: 5813393    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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