Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          <---------AHL20(2)                                                                        -------->HAHB4                                                                        <---------ICU4                                                                        --------->YAB1                                                                        -------->ATHB1                                                                        <--------HAHB4                                                                        --------->ATHB51                                                                       <---------YAB1                                                                       --------->ICU4                                                                       <---------ATHB51                                                                     <---------ICU4                                                                     --------->YAB1                                                                    --------->ICU4            <---------ANAC58                                        <---------ATHB12            <---------ANAC58                                        <---------AHL20(2)         <-----    --------->TOE1(3)                                   <---------ARR11(3)                     ------    --------->TOE2(3)                               ---------->DOF2 <---------ATHB51        <-------- <-----------GT1                                <------ZmHOX2a(1)   --------->AHL20(2)     <---------ATHB51 ------AHL20(2)                                 ================HOX2a_HOX2a                --------->AHL20(2) ----->AHL20(1)                ---------->DOF2 <----------ID1 <-----------HVH21            --------->ICU4 ----->AHL20(2)              <XXXXXXXXXXXXXXXXXXXXMIR773B<------ZmHOX2a(2)                 <---------AHL20(2) ------AHL20(1)              <XXXXXXXXXXXXXXXXXXXXMIR773--------->ARR11(3)<---------YAB1 --------->YAB1   aaattaccttgaaggcttgaacattgtcgagacaaaagttgaaaacagaaggacaaaagatcactgtcaaataattattaatacatcagaaaaataatta  5810900                                                <---------ICU4     --------->YAB1            --------->ANAC46--------->ICU4                              <---------ARR11(3)  --------->TOE2(3)          <---------ALFIN1  <---------YAB1                             <---------CCA1(2) ----------->GT1            ------>MYB46(1)<---------ARR11(3)                        --------->GLK1(2) ----AHL20(2)               ------>MYB83   --------->ARR11(3)    <----------DOF2 --------->YAB1 --->AHL20(2)          <-----------GT1   ------->TEIL           <---------DAG2  <---------YAB1      < -ICU4              --------->ARR14(2)<---------YAB1 --------->ANAC55(2)  ------>ZmHOX2a(2)--------->ARR11(3)   aaaacgataatattgttttcagtattcacctacacataatatgaatatcatgtttacatatttcgaccttttttgatcggttctaataatctatatctca  5811000                                                 --------->ANAC55(2)                                                 <---------ANAC55(2)                                                 --------->ANAC46                                                 --------->ANAC58                                               <-----------GT1       ------>MYB83             <---------TOE2(3)--------->ANAC58       ------>MYB46(1) <-----------HVH21    <--------HAHB4                                   <-------    --------->MYB46(3) --------->LBD16      --------->YAB1                                   --------    ------------>CBF  <---------ANAC55(2)   <---------ICU4                                   --------   -------->P      --------->GLK1(2)       ----------->TBP   <---------AHL20(1)           <----------  --------->MYB52(1)  <---------ANAC46     <---------AHL20(2)--------->AHL20(1)          --------->ATHB12 ---------MYB52(2)<---------GLK1(2)        <---------YAB1 --------->AHL20(2)---------->DOF2  <-------   aaactaaccaatctcatctagattccgtcaaattaagtttagtctataattacgaaactaaaaaatattagcaaatgggaaagtgctagagtcattgcac  5811100                                                                            ===================bZIP_DOF                                                                            ===================bZIP_DOF                                                                            --------->bZIP60(2)                                                                            <---------TGA1a                                                                            --------->ANAC58                                                                            --------->ANAC58                                                                            --------->TGA1a                                   --------->REM1(2)                        --------->ANAC46                                  <---------ANAC46                          --------->O2                                  <------NtERF2                             <---------O2                                 ------>NtERF2                            <---------ALFIN1                                <---------ANAC58                 <---------ANAC55(2)                                <---------ANAC46                 <---------ANAC46                               --------->ATERF1(1)               <---------TGA1a                               <------NtERF2                     <---------O2                              --------->ABI4(2)                  --------->O2       <---------ANAC55(2)    ------>NtERF2                      ==============================bZIP_DOF <---------AHL20(2)           <---------ATERF1(1)                =====================bZIP_bZIP --ZAT18                     <---------DEAR3(1)                 ---------------------->TaNAC69(1) ->ZAT14                     --------->ALFIN1  <---------HSFB2a(2)     --------->ANAC46     <<<<<<<<<TBF1 ->ZAT18              --------->CCA1(2) <---------GLK1(1)       <----------------------TaNAC69(1)<--- --CBF <---------ANAC46     <-----------HVH21  --------->HSFB2a(2) --------->DOF5.7(2)   <<<<<<<<<TBF1 --ZAT14        --------->ANAC46<---------ANAC58     --------->TOE1(2)------->TEIL  <----------DOF2   tagtttattatgtgaaacacgaagaaacacggtggcgcgtagaaatcacctagaaactacgaagaagacgtgaaccccacgtctctctttcttcttcttc  5811200                                           --------->ANAC46                                           --------->ANAC58                                    <-----                                           --------->ANAC58                                    <-----                                        --------->TOE1(2)                                      <-----                                      <---------------AtSPL8                             <---------ANAC46                                      <---------------AtSPL3                       <---------YAB1                                     ---------->DOF2               --------->MYB52(1)    <---------ANAC58                                <---------ARR11(3)            ---------->DOF2   <XXXXXXXXXXXXXXXXXXXXMIR2112-5P -------DOF2                    --------->ARR11(3) <-----------HVH21  --------->TOE1(2)  <---------ANAC58   tttctctatctcttcccattacaaaactcaagaagatgttaaagtacgaaacatgtcatacttcaaaagaaacgaaggaacaattgtgtttgcgtttgcg  5811300                                                                     --------->LBD16                                                                   <---------LBD16                                                                   --------->ATERF1(1)                                                                  --------->ZAT2                                                                  <---------ZAT2                                                                  --------->At4g35610                                                                --------->ATERF1(1)                                                                <-----------RAV1(2)                                                                --------->MYB46(3)                                                               <---------ZAT2                                                               --------->ZAT2                                                               <---------At4g35610                                                               --------->At4g35610                                                              ----------->RAV1(1)                                                             <-----------RAV1(2)                                                            <---------At4g35610                                                            ------>NtERF2                                                            --------->At4g35610                                                           =================RAV                                 <---------------AGL15     --------->DEAR3(1)                           <---------ICU4                  ----------->RAV1(1)                           --------->YAB1                 --------->RAP2.3(1)                          --------->AHL20(2)             --------->SPL7                          <---------AHL20(2)            --------->ALFIN1------>NtERF2                        --------->TOE2(3)             <---------ANAC58 ----------->HVH21         <---       <-------TEIL   <---------YAB1      <---------DEAR3(1)--------->LBD16      <------ZmHOX2a(1)--- ----ANAC46  <---------ANAC58    --------------->AGL15<---------ANAC58<------NtERF2 --------->At4g35610 ----ANAC58  <---------ANAC58 <---------ICU4      <---------ARR14(2)<---------ANAC46<---------ZAT2<-- ----ANAC58  <---------ANAC46 <-----------GT1--------->AtLEC2<------NtERF2     <---------TOE2(3) <---   agcatcgggttcatagcgttttatatcattaattactacattcggcgatgcagaaaccgtgccgcagcagccggggacattgaggaagctcgaatgagtc  5811400         --------->DEAR3(1)        <------NtERF2       ------>NtERF2      <---------ALFIN1     --------->ZAT18     <---------ABI4(2)    --------->ATERF1(1)                                                 <------ZmHOX2a(1)   <---------ATERF1(1)                                          --------->ANAC58   --------->ANAC58         --------->ANAC58                --------->ANAC55(1)   --------->ANAC58         --------->ANAC58                --------->ANAC46                  <------ <------ZmHOX2a(1)        ---------->DOF2                   --------->ANAC58                  ------- ------TOE1(1)         --------->At4g35610                  --------->ANAC58                  <------ ------>HSFB2a(2)      <---------At4g35610                 <---------LBD16                    ------- -------HSFB2a(2)  ----------->HVH21                     <---------REM1(2)          <------ZmHOX2a(1) ------TOE2(1) <------ZmHOX2a(1)             --------->TOE2(3)  --------->ANAC58 <-----------RAV1(2)   cgaggaggccaccgcgaggacttgacgctgaagccatcaagtcgtttccttcattcgtttacacggaagctagaggaattgagccaggaataggcgagct  5811500                                                     <---------ALFIN1                                                   --------->SPL7                                                <------MYB83                                                <------MYB46(1)                                               --------------->AtSPL8                                               <---------MYB46(3)                                 <--                                               --------->MYB59                                   <---                                               --------->MYB46(2)                           ---------        <---------ANAC46                       --------->MYB111(1)                          ---------      <---------ANAC46                        <---------MYB55(1)                            <--------   <-----------RAV1(1)                       <---------MYB52(1)                        --------->ETT(2) ---STY1(2)                                <---------ANAC58        ------->MYC3      <---------ZAT14 -->ZAT2<---------ANAC58                   <---------ANAC58        <-------MYC3      --------->REM1(2) ---ZAT2<---------ANAC58 ---------->DOF2   <---------ANAC46  <---------ZAT18         --------->ZAT14 -->STY1(2)     <---------AtLEC2          ------>NtERF2     <---------ANAC46<---------At4g35610  <---   agaatgtgttgtgtgtttgaatgaattcaaagacgatgaaacgctgcgtttggtaccaccttgtgtacatgtgtttcatgctgactgtgtagacatctgg  5811600                                  --------->DAG2     <---------CCA1(2)           ---------->DOF2  <---------YAB1        <-----------RAV1(1) --------DOF2        <---------ARR14(2) ------ANAC58        --------->ARR14(2)                                              <---------ANAC58 -->RAV1(2)         ------>ZmHOX2a(1)                                                <---------ANAC58 >At4g35610   ------->MYC3 <---------ANAC58 ------>ZmHOX2a(1)          <-----------GT1 -At4g35610<---------ALFIN1<---------ANAC46--------->TOE2(3)        <----------DOF2<-----------GT1 ------ANAC58 <-------MYC3 <---------ANAC58--------->ANAC55(2)  <-----------GT1------->TEIL   ctttctcatagctccacatgtcctatctgtcgtgctaaagtagttccttaatacgagtctcttaattagccttttactatgcattttgcgttacatagtt  5811700                                                  --------->YAB1                                                  <---------ICU4                                                  -------->HAHB4                                                 --------->ICU4                          <---------ZAT6         <---------ATHB12                    <---------YAB1               <---------YAB1                   <----------DOF2          --------->YAB1                <-----------GT1             --------->TOE2(3)                --------->ARR11(3)          ------->GAMYB                <---------ARR11(3)        -------->P --------->YAB1           <---------AHL20(1)             ------>MYB46(1)           --------->AHL20(2)             ------>MYB83           <---------AHL20(2)            --------->MYB55(1)           --------->AHL20(1)           <---------MYB111(2)          --------->AHL20(2)            <---------MYB46(2)          <---------AHL20(2)            --------->MYB46(3)       --------->AtLEC2  ---------->DOF2  <----------DOF2<---------YAB1      <-----------GT1<---------YAB1    ----------->GT1        <-------   ctccctttgtaaataaattatctttatagtgttgatattttaccaaccgtaatgatgatactactccatggaaggaaataatctacaaaggaattgaggc  5811800  Previous    Next  AGI:  At4g09100.1    Description:  zinc finger (C3HC4-type RING finger) family protein. Identical to RING-H2 finger protein ATL4A (ATL4A) [Arabidopsis Thaliana] (GB:Q9M0R7;GB:Q4TU19); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G35000.1); similar to RING/C3HC4/PHD zinc finger-like protein [Cucumis melo] (GB:AAO45753.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 5811253    to: 5811651    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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