Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        --------->ANAC55(2)      --------->ANAC46                <---------ANAC55(2) ---------AHL20(2)                    <---------ANAC46                                  <---------ARR14(2) -------AHL20(2)                      ----------->GT1                             <---------GLK1(1) ------AHL20(1)          --------->YAB1--------->LBD16                  <---------AHL20(2)          - ----->AHL20(1) --------->ANAC46     ------>ZmHOX2a(2)                  --------->AHL20(2)          - --->AHL20(1)<---------ZAT14        <------ZmHOX2a(2)             <---------CCA1(2)     --------->ARR11(3) ----AHL20(1)<---------REM1(2)     --------->ARR14(2)           --------->ANAC55(2)     <---------ARR11(3) -->AHL20(2) --------->ZAT14       <---------ARR14(2)           <---------ANAC55(2)     --------->ARR14(2)   atatttttaagacactacacacatttatcaaaacttggatccgtaaaaacaaatgtgaatgtaatcacatatcatttattgtgcatatcagatattgaaa  5807300          <---------AHL20(2)        <---------AHL20(2)       <---------AHL20(1)                                                                        ----       --------->AHL20(1)                                                                    <-------      <---------AHL20(2)                                                                     <-------    --------->AHL20(2)                                                                       --------   --------->AHL20(1)                                                                        --------   <---------AHL20(1)                                  ------->GAMYB                     <----------DOF2  --------->AHL20(2)       --------->ANAC46     ------>ZmHOX2a(2)                        <---------DAG2 ----->MYB46(1)         <-------TEIL           <------ZmHOX2a(2)                  <-------TEIL <----- ----->MYB83    --------->ANAC46   ----------------->AGL1              <---------YAB1  --------------   ccaaatatatatatttttaagacacatacacacatttaccaaaactgagatcggtaacagcaaatgtgccagtatttttgaagctacatgcctttttggt  5807400                                                                            ----------->RAV1(2)                                                                         --------->ATERF1(1)                                                                         ------>ZmHOX2a(2)              --------->YAB1                                            <---------ATERF1(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                              <------ZmHOX2a(2) ----->SPL7  <---------YAB1                                            <---------ARR11(3) --------AtSPL8                                                        --------->ARR14(2) --------AtSPL3                                                        <---------ARR14(2)        <--- ------->AtSPL8        <-------TEIL          <-----------GT1          <------ZmHOX2a(1)         ----- ------->AtSPL3  --------->YAB1          --------->ATHB12        <-----------GT1                ----- ----SPL7  --------->YAB1        <---------ATHB12             --------->CCA1(2)          --------->PCF2 --->AGL1 <---------YAB1--------->YAB1<---------AtLEC2    <---------TOE2(3)------>NtERF2<-----------TCP11(1)   acgaccatgactctgataataagcattcatcacaaatgatgcatgatttacaagactattagggatataacaggatccgcctggttgaattggcccacaa  5807500                                                                                            <-------MYC3                                                                                            ------->MYC3                                                    <---------ANAC58                       --------->O2                                                    <---------ANAC58                       <---------O2                                          <---------ZAT18                                <---------ALFIN1                               <---------ANAC58     <---------ANAC46                   xxxxxxxxxxxxxx                               <---------ANAC58  <---------MYB52(1)            --------->HSFB2a(2)  -                            <-----------GT1    --------->MYB52(2)    --------->ANAC58 --------->ANAC58                          <---------ICU4 <---------ANAC46            --------->ANAC58 --------->ANAC46                        <---------TOE2(3)<---------ANAC58  <---------ICU4     <---------LBD16      <-     ------>ZmHOX2a(1)<---------AHL20(2) <---------ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     -- ------ATHB12         --------->AHL20(2) --------->ANAC55(2)<----------DOF2  <---------ANAC46   <---- ---->ANAC58         --------->AHL20(2) <---------LBD16<-------TEIL  --------->ANAC46 --------->ANAC58 ---->ANAC58--------->REM1(1)  <---------ANAC46<---------MYB46(3)  <---------ALFIN1<---------GLK1(1)<   tcaactccttcactacatccaaaattaatatttccttgtagttgcgcattcgttgcgttcatctttgctacacaccattttgtggaactcgccacatgga  5807600            <---------YAB1            <---------TOE2(3)          <---------ICU4         --------->ICU4         <---------YAB1       --------->YAB1       <---------ICU4       <--------HAHB4      <---------YAB1  <---------WOX13(1)                                                                             ----  <--------P<---------HSFB2a(2)                     <---------CCA1(1)                          ------ <-------GAMYB                                      <---------RVE1(1)                          ------ xxxxxxxxx>smallRNA(se3)                           --------->ARR11(3)                          ------ -------->MYB55(2)                                 <---------ARR11(3)                          ------ --------AtMYB61              ---------->DOF2     --------->YAB1           --------->YAB1   <-------TEIL ------->ALFIN1            <---------YAB1        <---------YAB1       <---------AHL20(2)   --------->CCA1(2) -----AtMYB61            --------->YAB1    --------->DAG2             --------->AHL20(2)   --------->GLK1(2) ---------MYB46(3)      --------->ICU4    ---------->DOF2        <---------AHL20(2)     <---------TOE2(3)   ggtggttgatcattatggaagatagaatgatgaaaagaagtgccaaaagtgatgatattttggccattttttttaaatgacaattcaattgagattcaag  5807700       *TSS                                       <-----------GT1 ----->AHL20(2)                               --------->AHL20(1)                      --------->AHL20(2) --->ANAC58                                <-----------TBP              ----------->GT1 --->ANAC46                                --------->AHL20(2)         <---------ARR11(3) --->ANAC58<---------AtLEC2              <----------DOF2  ----------->GT1           <-----------TBP --->ANAC55(2)                  ------->TEIL  <---------AHL20(1)      --------->ARR11(3)   <-------TEIL   taattttgtttttggatgtctatgtgagtaaatgtatatgtgtctttatatattactagatagtatttagaagatagtttatatgtttttatatacatag  5807800                                                                                       <---------ARR11(3)                                                                                       --------->ARR11(3)                                                                                      <---------CCA1(2)                                                                                     <---------AHL20(1)                                                                                     <---------ARR11(3)                                                                                     --------->ARR11(3)                 <-----------GT1                                             <---------YAB1            ----------->GT1                                               <---------YAB1           --------->DAG2                            --------->YAB1    --------->AHL20(1) <----------DOF2          ---------->DOF2                           <---------YAB1 <-------TEIL      --------->AHL20(1)     --------->YAB1                  --------->ARR11(3)    --------->YAB1 <---------AHL20(2)  <------    ----------->TBP                  <---------ARR11(3)   ----------->GT1 --------->AHL20(2)  <------   atgtctataaaaaaaagtttaaccatataagaagtcaaagattttaaaaaacttatgaaaatgaaaatatacatatattattagaaatatatctttataa  5807900                                                         <---------AHL20(1)             --------->YAB1                                                         --------->AHL20(1)          <---------ICU4                                                         --------->ARR11(3)          --------->YAB1                                                       --------->ARR11(3)           <---------YAB1                                                       <---------ARR11(3)    --------->ARR11(3)     <                                                       <---------AHL20(1)    <---------ARR11(3)  <---                                                       --------->AHL20(1)   <---------CCA1(2)    ----          >>>>>>>>>RAP2.2                           --------->AHL20(2)     --------->ARR11(3)   <----        --------->ARR11(3)                          <---------AHL20(2)     <---------AHL20(1)  ------       --------->GLK1(1)                        --------->CCA1(2)          <---------ARR11(3)  ------     --------->YAB1    --------->MYB46(3)      --------->ARR11(3)          --------->AHL20(1)  <----- ---YAB1<---------ARR11(3)      ----------->GT1<---------ARR11(3)  ---------->DOF2  <---------AHL20(2) ---AHL20(2)         <-----------GT1       ---------->DOF2   <---------HSFB2a(2)<----------DOF2<-----   tttgaaatgatatctaaaacttttaaccactagatagtagaaaatcaaagatataaaaatattttggaagaaagaaatatatctttataattagaaatat  5808000    <---------AHL20(2)    <---------YAB1 ----------DOF2 ------ARR11(3)                                                                                     - ----->ARR11(3)                                                                    <---------ARR11(3) -----CCA1(2)                                                             --------->DAG2            < --->ARR11(3)                                                           ---------->DOF2      >>>>>>>> --->AHL20(1)        <---------YAB1       <----------DOF2 --------->AHL20(2)       --------->AHL20(1) ----AHL20(1)      --------->YAB1         <---------DAG2  <---------AHL20(2)       <---------AHL20(1) ----ARR11(3)     <---------YAB1 ---------->DOF2  <----------DOF2    --------->YAB1--------->AHL20(2)   atctttataatttgaaatgtatgattatagaaacaaaaagataactttataactttgaaattatatgtctatgaaaaaggttctatatattagaaaacca  5808100                 --------->AHL20(2)               <---------TOE2(3)         <---------CCA1(1)         <---------RVE1(1)        --------->AHL20(1)        <---------ARR11(3)        --------->ARR11(3)     <---------TOE2(3)                                       --------->WOX13(1)    ---------->DOF2                                         <---------WRKY12   <---------AHL20(2)                                       <---------WRKY38(1) --------->CCA1(2)                  <-----------GT1        --------->WRKY18(1)         --------->TOE2(3) -------->ARR11(3)           --------->CCA1(2)           <------MYB46(1)              ----------->GT1 ---------ARR11(3)    ----------->GT1                    <------MYB83     --------->ZAT18           - >MYB2  <---------AHL20(1)  --------->AHL20(1)    ---------->DOF2         <---------ZAT18  ----------   aagatttaaagatatttaagaaaatagaaatatatgagtaacatctcaaatccaaagcttggtcaatgagagagagagcgctactaaatcgtcaaaagag  5808200  Previous    Next  AGI:  At4g09090.1    Description:  glycosyl hydrolase family protein 17. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09465.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83700.1); contains InterPro domain X8 (InterPro:IPR012946) Range:  from: 5807217    to: 5807707    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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