Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       --------->TOE2(3)                                                    ------>ZmHOX2a(2)                                                   <------ZmHOX2a(2)                                                  <---------ARR11(3)                                            ===============HOX2a_HOX2a                                            <----------DOF2        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                            ==============HOX2a_HOX2a                                         ---------->ID1    <---------DAG2                                        <-----------GT1    <----------DOF2  --------------->AtSPL8                                       <-----------GT1------>ZmHOX2a(1)  <------ZmHOX2a(1)                            <---------RVE1(1)     <---------ARR14(2)     ====================HOX2a_HOX2a                           <---------MYB52(1)     --------->ARR14(2) --------->MYB52(1)      <xxxxxxxxxxxxxxxxsmallRNA(i)<---------AHL20(2)============================HOX2a_HOX2a -------->ATHB12        --------->MYB46(3)  ------>ZmHOX2a(1)   <-----------GT1 ------->TEIL >AtMYB61  <---------ARR14(2)    --------->AHL20(2)=============================HOX2a_HOX2a -MYB59    --------->ARR14(2)   <---------AHL20(2)--------->ARR11(3) ---------->DOF2  <------ZmHOX2a(2)   cctgattagacccgaaccgaaatcgaaccgatattttaaatttatccttttagatcctaaacttttttacccaaaggacctgtacccgatcgagttttat  5783700            <----------DOF2      --------->ARR14(2)                                                                           --      <---------ARR14(2)                                                                 --------->LBD16    --------->ANAC46        --------->AtMYB61                --------->ANAC46        --------->ARR14(2)    ----------->HVH21    <---------ALFIN1                  <---------ALFIN1------>ZmHOX2a(1)   <----- ------->TEIL       <---------KAN4(2)          <-----------GT1   --------->LBD16     <---------ARR14(2)   ctgaacccgacccgcttactcgaatgtccacctctacgagtgagacatgaaaccctctcttccactccgagtctttcctctcaattgaatccgagataaa  5783800                                                                                 <----------ID1                                                                           --------->LBD16                                                                          <---------HSFB2a(2)                                                                          --------->HSFB2a(2)                                                                          --------->LBD16                                                                         --------->HSFB2a(2)                                                                         <---------LBD16                                                 <----------DOF2         <---------ANAC46           <                                                <---------ANAC58         <---------HSFB2a(2)    <----                                          <------MYB46(1)               <---------LBD16         <----                                          <------MYB83            <---------RVE1(1)             -----                        <---------GLK1(2) <---------MYB46(3)      <---------CCA1(1)             -----                 ------>MYB46(1)      <-----------RAV1(1)        <---------ARR14(2)             ----- --------->GT1   ------>MYB83       ------>MYB83<---------ANAC58 --------->ARR11(3)      ----------->GT1 ------GT1     --------->AtMYB61    ------>MYB46(1)              <---------ARR11(3)   --------->MYB52(1)   ccggtttaatctccaaaccaatcccatattcttgtaccaaatgttggtttgcttcttcgtacaagaagatattttccgggaaaatgacaaacagagaaaa  5783900                                                      <---------ATHB12                                                    --------->WOX13(1)                                               <-------MYC2                                               ------->PIF5                                               ------->MYC3                                               <-------MYC3                                               ------->MYC2                                               <-------PIF5                                              --------->ANAC55(2)                                              <---------O2             ---------->DOF2                  --------->TGA1a            --------->YAB1                    <---------TGA1a  --------->LBD16                             <---------bZIP60(2) --------->HSFB2a(2)                          --------->ANAC46 <---------HSFB2a(2)                          --------->O2 ---------LBD16                             <---------DOF5.7(2)               <---------TOE1(2) -----ARR11(3)                            --------->DOF5.7(2)                 <---------------------WRI1 -----ARR14(2)                            <-----------HVH21                  ------>ZmHOX2a(1) ---->ARR11(3)          --------->ANAC46<---------ANAC58              <---------GLK1(2)             - ---->ARR14(2)        --------->ANAC46  <---------ANAC58      --------------------->WRI1           -- ---->GLK1(2)===========================================bZIP_DOF<---------ATHB12         ---------->DOF2   tctccagaaaacaatgaaagctatacacaaaaactcgcgcttccgttcacgtggcaatcacttccaatgaacgattctccttcgtttctcccaaagtccc  5784000                                                                                           <---------GLK1(1)                                                                                           --------->CCA1(2)                                                                                           --------->ARR14(1)                                                                                          <---------ARR11(3)                                                   <-------TEIL                           --------->ARR11(3)                                                  --------->CCA1(2)                       --------->ARR11(1)                                                  --------->ARR14(1)               --------->MYB52(1)                                                 <---------ARR14(2)             --------->ANAC58                                       ---------->DOF2                          --------->ANAC58                                    <---------------AGL15                       --------->ANAC46                         --------->GLK1(2)       --------->ARR14(2)           ---------->DOF2     --------->YAB1      <-----------ARR10       --------->ARR11(1)       <---------MYB46(3) <-------    <<<<<<<<<ARR2       <---------GLK1(2)        <---------GLK1(2)        ------>ZmHOX2a(2)--------->GLK1(1)    <---------ATHB12 <---------HSFB2a(2)       ----------->ARR10         <------ZmHOX2a(2)--------->ARR14(2) ----------->CBF     --------->LBD16--------------->AGL15               <---------MYB52(1)<---------ARR14(2) ------->YAB1        --------->HSFB2a(2)   ----------->GT1             *TSS<-------GAMYB----------->ARR10   atcacaatcaaaaaccttctctccgagaatctcactcactacaaagagtaagattcgattcaaaaacaaactccgatcgttgaagcaacgaagatatgct  5784100             <<<<<<<<<TBF1                                                       --------->REM1(1)  <-----------GT1                                  <-----------HVH21             <-----------GT1 <--- --YAB1   <<<<<<<<<TBF1     ------>ZmHOX2a(2)     --------->ANAC46           --------->At4g35610<----   tacttcaccttcttcttcttctacatatgatccattctcttccaatttctctccgtcgctcactaatgccttctctagtagcttcaccattcccatgggg  5784200                                                                                                    <                                                                                               <-----                                                                                               ------                                                                 <---------TOE1(2)        <---------At4g35610                                                        <------MYB46(1)              ----------------                                                        <------MYB83<---------WOX13(1)    --------->At4g35610                                                       --------->MYB46(2)         =================== -----P <-----------GT1                  <---------GLK1(2)       <---------TOE2(2)<------ZmHOX2a(1) < ---GAMYB            ------>ZmHOX2a(1) <---------YAB1  --------->MYB59            ===================   ttagtcaatttcactctatcttcctcttcgaaatttgagttctgattctgaatttgtttggtattcgtagattgaaattgagtaggagagtcaccagagc  5784300              --------->ANAC58              --------->ANAC58              --------->DAG2             --------->SPL7   ------>ZmHOX2a(2)  <------ZmHOX2a(2)  --------->GLK1(1)  --------->HSFB2a(1) <---------ARR14(2)                                                                        --------->ATHB12 <-----------ARR10 --------->ANAC58                                                       <---------YAB1 <---------ARR11(1)--------->ANAC58                                                     ------>ZmHOX2a(2) --------->ARR14(2)--------->bZIP60(2)                                                  ============= <---------ARR11(3)--------->ANAC55(2)                                                  xxxxxxxxxxxxx --------->ARR11(3)--------->O2                                                        ============== ---------CCA1(2)  <---------TGA1a                                                     <------ZmHOX2a(2) ----ZAT2    ================bZIP_DOF                                                 --------->ARR14(3) --->ZAT2    ---------->DOF2                                                          <---------ARR14(3) ------->TaNAC69(2)--------->TGA1a                                                    --------->ARR11(3) =========HOX2a_HOX2a                                                                 <---------ARR11(3) ---------ARR14(1)<-------TEIL                                         ---------->DOF2<---------ARR14(2) ========HOX2a_HOX2a               --------->TOE2(3)         <-----------GT1          --------->ARR14(2)   tcggatcttctctcgtaaggcacgtcttcttcgtaatccctaatctcgttcatgttcttaagtttacattccaaaaaccgaattagacgatcttcattgt  5784400                                                                <---------MYB46(3)                                                               <---------AtMYB61                                                             --------->ALFIN1                                                            ------->MYC2                                                            <-------MYC2                    ------>ZmHOX2a(2)                       <-------MYC3                  <---------ARR14(2)                        ------->MYC3                  <---------ARR11(3)             <---------ANAC46                 <------ZmHOX2a(1)            --------->ATERF1(1)               <---------TOE1(3)              <------NtERF2<---------TGA1a               <---------TOE2(3)             <-----------HVH21 --------->ALFIN1         <-------TEIL                  <---------TGA1a --------->ANAC58        <--------P--------->ARR11(3)   --------->O2    --------->ANAC58        =========================================MYC_MYB   ==========================================      <------MYB83--------->ARR14(2)   ==================================MYC_MYB      <------MYB46(1)                  <---------O2<---------ALFIN1  <---------TOE2(3)     <---------TOE1(2)                 <---------ANAC55(2) ==============MYC_MYB     <---------TOE2(2)           <---------TOE1(3)<---------ZAT18    <---------TOE1(3) =======================HOX2a_HOX2a    --------->ANAC55(2)------->TEIL----------->GT1 xxxxxxxxx>smallRNA(le3)         <---------TOE2(3)--------->ZAT18<-------GAMYB                     <- =======================HOX2a_HOX2a<-----------HVH21   --------->ANAC46  >>>>>>>>>GT-1        <------   ttcatcgtaggtagattaaggatcgttcaacacttaaggtcacttgtcgtcgcgcacacgaacgtgtggttgaggtaaatctcttggtttagttttttgc  5784500       <---------GLK1(2)       <---------ARR14(2)                                <---------HSFC1(2)       ----------->GT1       --------->ARR14(2)                          <------ZmHOX2a(1)        --------->ANAC58   <---------LBD16                              --------->HSFB2a(2)   <---------ANAC46   <---------At4g35610                          <---------HSFC1(1)  --------->MYB52(1) =========bZIP_DOF<---------ANAC46              --------->HSFC1(1) ----------->HVH21    <---------TOE1(3) ---------DOF2    <---------ANAC58              <---------HSFB2a(2)----------->TGA1     <---------TOE2(3) -----GT1         <---------ANAC58  <---------ANAC46     --------->HSFC1(2) --------->ANAC58   tctttagcggattttgaattgtgtgataagtgcttcttctgtgtaattttctaggaagaagcatctacaatgacggagacgaaattgtttaaagtttctt  5784600  Previous    Next  AGI:  At4g09020.1    Description:  ATISA3/ISA3 (ISOAMYLASE 3); alpha-amylase. similar to ATISA1/ISA1 (ISOAMYLASE 1), alpha-amylase/ isoamylase [Arabidopsis thaliana] (TAIR:AT2G39930.1); similar to isoamylase-type starch-debranching enzyme 3 [Phaseolus vulgaris] (GB:BAF52943.1); similar to isoamylase isoform 3 [Solanum tuberosum] (GB:AAN15319.1); similar to isoamylase isoform 3 [Pisum sativum] (GB:AAZ81837.1); contains InterPro domain Glycoside hydrolase, family 13, N-terminal; (InterPro:IPR004193); contains InterPro domain Glycosyl hydrolase, family 13, all-beta; (InterPro:IPR013780); contains InterPro domain Immunoglobulin E-set (InterPro:IPR014756); contains InterPro domain Range:  from: 5784071    to: 5788999    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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