Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       --------->ANAC58                     --------->ANAC55(2)                     --------->ANAC58                     <---------ANAC55(2)                     --------->ANAC46                   <-----------GT1<-------TEIL             --------->DAG2    <------MYB83            ---------->DOF2    <------MYB46(1)         <---------ANAC58 <--------HAHB4         <---------ANAC58 <---------ICU4                           <----------DOF2         <---------ANAC55(2)  --------->MYB59              <---------ARR11(3)         <---------ANAC46 --------->ATHB12                 --------->ARR11(3)                 -------   acgaatgaaatgcgtaaagtattacgcatcattaggttcaatttgctaaatgtgagttcaagttcttagctttctctacttcttagatttcatatatcaa  5781800                            <---------MYB52(2)                            --------->MYB46(3)                      <---------ICU4                      --------->YAB1                     <---------YAB1                   --------->YAB1                  <---------YAB1                  --------->ICU4               --------->TGA2(2)              <-----------TGA1             --------->ANAC55(2)            --------->TOE2(3)             <---------ANAC58              <---------ICU4             <---------ANAC46 --------->ANAC46 --------->WOX13(1)             <---------ANAC58------->GAMYB --------->YAB1   --------->ANAC46<---------ICU4         <---------ATHB12            <------ZmHOX2a(1) -->YAB1     <---------ANAC55(2)    <----------DOF2               --------->TOE1(2)            <-----   aattcaaacaacattgcgtcatcatcatcaacaaacaacttttaatcatcaattactaaacaagtatacataggaaacaacttaaatgaccaaaatagag  5781900                                                                                  --------->ATHB12                                                                                  <--------ATHB1                                                                                  -------->ATHB1                                                                                  --------->ATHB51                                                                                  --------->YAB1                                                                                  <---------ICU4                                                                                 <---------ATHB12                                                                                 --------->ICU4                                                                       <---------DAG2 --------->YAB1           <---------DAG2                                     --------->ANAC58 --------->WOX13(1)      ------>ZmHOX2a(1)                        --------->ANAC46        <----------DOF2--------->ATHB12 ----ZAT6  <----------DOF2            --------->YAB1          --------->ANAC58------------>ATHB5   ttcaagtccttagctttttctacttgttagattccacatatcaaaattcaaacaacattgcatcaagaaacaactttttttcaatcattgattactaaat  5782000                                                                                              <------                                                                                              <------                                    <----------DOF2     <------ZmHOX2a(1)                     -------                                   --------->TOE2(3) <-----------RAV1(2)                 <---------HSFB2a(2)                                   --------->TOE1(3) <---------LBD16             ---------->DOF2                      ----------->GT1       --------->ALFIN1            <-----------GT1  --------->HSFB2a(2)                     <---------WOX13(1)<-----------------AGL1          <-----------GT1  <---------LBD16   aagtgttgatgaaaacagattggattgaaaaatgaaacctttacgagtgtggaaaccaggaggtttacagttttttcccttgtaaaagtctctgggagct  5782100                                             --------->KAN4(2)                                            <---------KAN4(1)                                            --------->HSFB2a(1)                                  ----                                            <---------HSFC1(2)       ------->GAMYB               ----                                            --------->HSFC1(2)       --------->TOE1(3)           <---                                            --------->KAN4(1)        --------->TOE2(3)       <-------                                            <---------HSFB2a(1)    -------->P              --------->WOX13(1)                                           <---------KAN4(2)      ------->GAMYB         --------->ARR11(3)                                      <---------LBD16            --------->MYB46(3)     <---------ARR11(3)                            <---------ARR11(3)                 <-----------GT1          --------->GLK1(2) ---ZAT2                    --------->ARR11(3)                 --------->YAB1       --------->HSFB2a(2) ---At4g35610              --------->At4g35610             --------->LBD16     --------->At4g35610 -->ZAT2      --------->ARR11(3) <----------DOF2          --------->LBD16      <---------At4g35610   cgtttgggagagagaatatcaagcgaagaagctctctttcttcggaatgttcttccaatcccgaataacaaccctaatgtcatcttccaaaatctatcaa  5782200             --------->ARR11(3) ----------->GT1 ----->ARR14(2)              --------->YAB1                                                   <------ ----->GLK1(2)<-----------RAV1(1)                                                   --------->HSFB2a(2) ------ARR14(2)          ----------->GT1                                <-----------HVH21 ---------->DOF2 ----------AGL1  <---------REM1(1) ----------->GT1 ------->TEIL  >>>>>>>>>TBF1      <---------HSFB2a(2)   atctggtaaacaaaatatgttgtagaatcgataaaaatggaaactttcgaatgtatcaaatgttgaagaagaaatgtcagagatttgtagaagaaaggtc  5782300                                                                                                 <---                                                                                                -----                                                                                                <----                                                                                                -----                              --------->DAG2                                                   ------                            ---------->DOF2                                                    <-----                       ----------->GT1                                                         ------ ---------->DOF2      <---------TOE2(3)       ---------->DOF2                                <------- -----HVH21       <----------DOF2        --------->AHL20(2)                     <---------YAB1 <-----   agagaaagggtttaggggttcttttaggtgaaaaggcccaaaactaaataaagcccattttcatacattcacttatttgtttataattctccaaattacc  5782400                                                                             ----------->GT1                                                                     ------>ZmHOX2a(2) -------DOF2                                                       --------->ARR11(3) ---------->AGL15                                                  <---------ARR11(3) -----------AGL15                                               <---------WOX13(1) ---->TOE2(3)                                                  <------------CBF ----------->AG                                              --------->AHL20(2) ------------AGL2              --------->ATHB12          --------->ATHB12--------->HSFB2a(2) ----------->AGL1         ---------->DOF2           <---------AHL20(2)   <---------HSFB2a(2)--------- ----GT1                 <---------AHL20(2)<---------ANAC58  <---------AHL20(2)         <---------YAB1 ------------AGL1 --------->YAB1           <---------ANAC58 --------->AHL20(2)       <---------YAB1   tttaaggggatgtattcaaattagaatttaaagtgatttgagttttcttgagttttaaatgatttaattgatcttagggaagtttatatgatttttgtaa  5782500                                                                                    --------->AHL20(2)                                                                                    <---------AHL20(2)                                                                                   --------->AHL20(2)                                                                                   --------->YAB1                                                                                   <---------AHL20(2)                                                                                <---------ICU4                                                                               <---------ATHB51                                                                               --------->AHL20(2)                                                              ------>ZmHOX2a(1)--------->ICU4--------                                                          --------->ARR14(2)   <---------AHL20(2)               <----------DOF2     --------->GLK1(1)     <---------GLK1(1)    <---------AHL20(1)        <-----------ARR10          <---------GLK1(1)     --------->GLK1(1)    --------->AHL20(2)   --------->AtLEC2         <---------ARR14(2)      ---------->DOF2          --------->YAB1  <------- -->GT1<---------CCA1(2)    --------->ARR14(2)  <-----------GT1     <---------GLK1(2)<---------YAB1   aatccattcaaatctcactttaaaccatgggatttggatttctgtatttttaactaaagaaatcctctcaaattctccaaaataattaaaattcaaatcc  5782600                                            --------->TOE2(3)                                           <---------ICU4                                           --------->ATHB12                          <-----------RAV1(2)                 --------->At5g28300       --------->YAB1                ----------->GT1           --------->ICU4               --------->ZAT6             <---------ATHB12 ->ARR14(2)  --------->MYB52(1)  <---------ARR14(2)      --------->ZAT6                <---------YAB1 --ARR14(2)  --------->YAB1      --------->ARR14(2)    --------->YAB1               <-------TEIL   --   acaaattgttttcaataacagtaaattttcaggtggattttgaaatcattagttcaataacactgaatttcatgagttttttaaaattcatgtttgaata  5782700  Previous    Next  AGI:  At4g09012.1    Description:  similar to 60S ribosomal protein-related [Arabidopsis thaliana] (TAIR:AT5G40080.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82662.1); contains domain MITOCHONDRIAL RIBOSOMAL PROTEIN L41 (PTHR21338) Range:  from: 5780467    to: 5782183    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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