Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               --------->ARR11(3)                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            --------->YAB1              <-----------GT1      <---------ARR11(3)  --------->AHL20(2)               <---------GLK1(2)------->TEIL<----------DOF2  <---------AHL20(2)               <---------ARR11(3)       <---------CCA1(2)            <---------YAB1 ----------DOF2                    --------->ARR11(3)--------->HSFB2a(1)        ---------->ID1 -----CCA1(2)                --------->YAB1      ------>ZmHOX2a(1)    <---------ANAC46 --------->YAB1   ctctttaaatgaaattgtaatggacagtgtatcacaagatttttgccagtcctgaacgttctaaatctttaggcgtttatttgttctatttataaatatc  5764400                                                          <---------AHL20(2)                                                          --------->AHL20(2)                                                         <---------AHL20(2)                     <----                                                         <---------AHL20(1)               --------->At4g35610                    --------->YAB1       <-----------GT1 --------->AHL20(2)               <---------ZAT2             <-----------GT1   <------------------------ANAC81                        <---------STY1(2)       <----------DOF2      ------>ZmHOX2a(1)     --------->ZAT6                      --------->STY1(2)    <---------TOE1(2)       <----------DOF2  --------->ZAT14     --------->YAB1<---------At4g35610---   aaatcgtagctttataatccattcatagtcctttgctcttgttttactactctcactaatttttttataaaaacaattcttagctactagctagctccat  5764500                    <---------ANAC58                 <---------ANAC58       <------------CBF                    <---------ANAC58        --------->TOE2(3)             --------->AHL20(1)    -----           --------->ANAC46                --------->ANAC58               --------->AHL20(2)   ------           --------->ANAC58                --------->ANAC46               <---------YAB1       <-----        --------->ZAT14        --------->ZAT14<---------TOE2(2)           <---------AHL20(2)   ------ -------TBP--------->ANAC58<-----------GT1 --------->ANAC58      <-----------GT1 --------->ETT(2)<--- ------>YAB1     <----------DOF2    --------->ZAT6   <---------ANAC58    --------->AHL20(2)    <-----   ttataatcccttcactcaactttcttgtttcactattctcactaaacgtaagttttcttgcatcatttttctaaattttattgtcgatatcaaactagat  5764600       ------------>CBF     <---------GLK1(1)                   <---------------------WRI1     --------->GLK1(1)                 <---------ANAC58   <------ZmHOX2a(1)              <---------ICU4 <---------TOE2(2)              <------------CBF <---------TOE1(2)            <---------AHL20(2) ---->ARR14(1)           --------->ARR11(3) --->ARR11(1)            <---------ARR11(3) ----GLK1(2)            --------->YAB1 <---------ANAC46 --->ARR14(2)          <---------YAB1  <---------ANAC58    <---------REM1(1) ----TEIL <------------CBF    --------->AHL20(2)           <---------ANAC46 ----ARR14(2) ---------->DOF2--------->AHL20(2)<---------AHL20(2)   tcgaaggatttcaattgaaagtcttatgatatttaattgttacgtcgatataatctatgtgatgtagaaacactcatttttaggggtctaattacatcta  5764700                <---------AHL20(2)           <---------AHL20(2)         <----------DOF2      --------->GLK1(2)      <---------ARR11(1)      --------->ARR11(3)      <---------ARR14(2)      <---------ARR11(3)                                                         <XXXXXXXXXXXXXXXXXXX      --------->ARR14(2)               ----------->GT1                  --------->ARR14(2)       ----     <---------ARR14(1)           --------->ATHB12                      <---------ARR14(2)   --------     <---------CCA1(2)            <---------ICU4                    --------->HSFB2a(2)      -------- --------->AtLEC2                <---------YAB1                     <---------LBD16---------->DOF2 --------->ANAC58                --------->ICU4                     <---------HSFB2a(2)     xxxxxxxxx --------->ANAC46        <---------AtLEC2                   <---------TOE2(3)    <XXXXXXXXXXXXXXXXXXX --------->ANAC58---------->DOF2 <---------ATHB12           <---------TOE1(3) <----------ID1xxxxxxxxx   ttcaagcaaatcttttatttaaagtgtgcatgctaatgatttggataattttgtttcaaattagggttttctcggaaatggagacaaaagttgggaagca  5764800                                                             <---------At4g35610                                                             <---------ZAT2                                                             --------->At4g35610                      --------->YAB1                         --------->ZAT2                     --------->ICU4                       --------->At4g35610                      --                     <---------ATHB12                     <---------At4g35610                 <------                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxsmallRNA(i)         ------- XMIR773B     xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)---------->DOF2                               <------ ------>DOF2 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->AtMYB61  --------->HSFB2a(2)         ------- ->ANAC58   --------->WRKY38(1)      <------ZmHOX2a(1) --------->ZAT2                        <------- ->ANAC58<---------ZAT6 <---------YAB1---------->DOF2  <---------ZAT2              --------->ARR14(2) xxxxxxxxxxx>smallRNA(si3)         <---------TOE2(3)   --------->At4g35610         <---------ARR14(2) XMIR773 --------->ALFIN1          <---------TOE1(3)   <---------At4g35610    xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxx>smallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------HSFB2a(2)        <-------   aaagaagagaagtgttgactcaaatgatgatgtctctaaggaaaggagaccaaagcgagcagcagcttgcagaaacttcaaggagaaacctcttcgtatc  5764900                                                                                                   --                                                                                                  ---                                                                                                -----                                                                                              -------                                                                                              -------                                                                                              <------     --------->GLK1(2)                                                                        <------     --------->ARR14(2)                  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxx     <---------ARR14(2)                ------->MYC2               <---------MYB52(1)      --------->YAB1 --------->HVH21                       <-------MYC3  ------>ZmHOX2a(2)                    <---------ICU4 ---ARR11(1)                           <-------MYC2 <------ZmHOX2a(2)                    <---------ATHB12 -->ARR14(2)                           ------->MYC3<---------ARR11(3)                    --------->ICU4 ---ARR14(2)                        <---------ARR14(2)          <---------ZAT6     xxxxxxxxxxxxxxxxxx >TEIL                          --------->At4g35610--------->ARR11(3)              xxxxxxxxxxxxxxxxxx --CCA1(2)                 ---------->DOF2  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --ARR14(1)          <---------At4g35610--------->ALFIN1 <------NtERF2       <----------DOF2<--------   tctgacaaatctgaaaccgttgaagctaagaaagagcagaacgtggtggaagagatcgtggcgatacagttaacttcttctttggagagcaatgatgatc  5765000         --------->LBD16     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------->TOE1(1) --->ZmHOX2a(1) ->ZmHOX2a(2) -->ARR11(3)                                          xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -->ARR14(2)   ----------->HVH21               <---------GLK1(1) ---ARR11(3) <---------At4g35610         <---------At4g35610     <---------ARR11(3) ---ARR14(2) --------->At4g35610   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          ----------->HVH21 xxxxxxxxx>smallRNA(fl3)        --------->ANAC55(2)<---------ALFIN1xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xx>smallRNA(si3)             <-----------GT1  --------->GLK1(1) <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxx>smallRNA(s2) <---------WOX13(1)     --------->At4g35610     --------->ARR11(3)              ---- -YAB1 <---------LBD16<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->ALFIN1   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ctcgtccaaaccggaggctgactgattttgttttacataattcagatggagttccacagcctgtggagatgttggaacttggtgacatttttcttgaagg  5765100                                                                                                 <---                                                                                            xxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                 <---------ARR14(2)                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                   <---------HSFB2a(2)xxxxxxxxxxxxxxx                                                                   --------->HSFB2a(2)xxxxxxxxxxxxxxx                                                                  <---------ANAC46  xxxxxxxxxxxxxxxxx                                                                --------->REM1(2)--------->ARR11(3)                                                      <----------DOF2  <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                            ----------->GT1  <---------ANAC58   <---------CCA1(2)----                                       --------->ALFIN1  <---------AtMYB61     <---------AHL20(1)<---                           <----------ID1  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------ARR11(3)<---          <---------MYB52(1)       --------->DAG2   xxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxx         <----------DOF2xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------ANAC58  --------->ARR11(3)---- ----->ALFIN1--------->ANAC55(2) ---------->DOF2    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------YAB1   tgttgtcttacctttaggtgatgacaaaaacgaagaaaagggtgtgaggtttcaatcttttggtcgtgtcgagaactggaatatatctggttatgaagat  5765200             <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          --------->CCA1(2)         <---------ARR14(2)         --------->ARR14(2)      --------->LBD16     --------->LBD16    --------->LBD16    <---------LBD16   <---------LBD16  <---------LBD16 ------HSFB2a(1) xxxxxxxxxxxx>smallRNA(si3)   <---------LBD16 --------->LBD16 xxxx>smallRNA(si3)           <---------At4g35610 x>smallRNA(se3)              --------->At4g35610                                <---------ICU4 xxxxx>smallRNA(si3)         --------->MYB52(2)       <---------ZAT2            <---------YAB1 xxxxxx>smallRNA(si3)        <---------DOF5.7(2)---------->DOF2              <---------YAB1 xxx>smallRNA(si3)         --------->DOF5.7(2)<---------RAP2.6(3)         --------->AHL20(1) ----->HSFC1(2)            <---------MYB52(1) --------->At5g28300  --------->ANAC58 ------HSFC1(2)           <-----------HVH21  <---------ANAC46      --------->ANAC46              <--- ------MYB46(3) <---------GLK1(1)      --------->ATHB12<---------GLK1(2) --------->AHL20(2)      <--- xxxx>smallRNA(si3)    ------->GAMYB  <---------YAB1  --------->ZAT2 --------->AHL20(2)      -------- ----->HSFB2a(1)--------->GLK1(1)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ANAC58    <----------DOF2   ggttccccggggatatggatatcaacagcgttagcggattacgattgccgtaaaccagcttctaaatacaagaaaatatatgattatttctttgagaaag  5765300  Previous    Next  AGI:  At4g08990.1    Description:  DNA (cytosine-5-)-methyltransferase, putative. similar to MET2 (DNA METHYLTRANSFERASE 2), DNA (cytosine-5-)-methyltransferase [Arabidopsis thaliana] (TAIR:AT4G14140.1); similar to MEE57 (maternal effect embryo arrest 57), DNA (cytosine-5-)-methyltransferase [Arabidopsis thaliana] (TAIR:AT4G13610.1); similar to MET1 (DECREASED METHYLATION 2DNA) [Arabidopsis thaliana] (TAIR:AT5G49160.1); similar to DNA methyltransferase 1a [Brassica rapa] (GB:BAF34635.1); similar to DNA methyltransferase 1b [Brassica rapa] (GB:BAF34636.1); similar to DNA cytosine-5-methyltransferase [Prunus persica] (GB:AAM96952.1); contains InterPro domain C-5 cytosine-specifi Range:  from: 5764778    to: 5770493    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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