Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   --------->HSFB2a(1)                                                <---------ARR14(2)                                                --------->ARR14(2)                                               ------>MYB46(1)                                               <---------ARR14(1)                                 --------->LBD16<---------ARR11(1)                                --------->ANAC55(2)                                <---------ANAC55(2)                                            <-----                                <---------ANAC58<---------ARR11(3)                             ------                          --------->AHL20(2)   <---------CCA1(2)                        <------ZmHOX2a(1)                     ------>ZmHOX2a(1)         ------>MYB83                       <------ZmHOX2a(2)                 <---------ARR14(2)    --------->TOE2(3)                          =============HOX2a_HOX2a         <---------At4g35610    <---------ANAC58<-----------ARR10                --------->ARR11(3)         --------->At4g35610    <---------ANAC46--------->ARR11(3)               <---------ARR11(3) ------GT1       --------->ARR14(2)    --------->TOE1(3)                     ---------->DOF2   <-----   cctttctcttcatctaacaaatcctccataaattccgtaaaccctaaccaaatcttcccatcgctatgtctatacgtttgaaagatcaaaggatgtttag  5731800                                                                          --------->ARR11(1)                                                             xxxxxxxxxxxxxxxx>smallRNA(i)<----------DOF2                                                            <---------ANAC46            <---------ANAC46                                                           <------NtERF2  --------->ARR14(2)                                                          <---------ATERF1(1)        <--------P                                                          ------>NtERF2   <---------ARR14(2)                                                          <-----------HVH21         <-------GAMYB       ----------->GT1                                   <---------DEAR3(1)         <---------MYB52(1)       <---------ANAC58                                  <---------ANAC46 <---------GLK1(2)       <---------ANAC58                 <---------LBD16  --------->DEAR3(1)--------->ARR14(1)       --------->ANAC55(2)     <xxxxxxxxxxxxxxxxsmallRNA(s)--------->ATERF1(1)   <---------LBD16XXXXX       <---------ANAC55(2)    --------->ARR14(2)       --------->LBD16   <---------HSFB2a(1)  <------   ------->TEIL               --------->GLK1(2)        ------>NtERF2   <---------TOE1(2)<---------ANAC58 ----TOE1(3)                  <---------ARR14(2)      <---------LBD16  <---------TOE2(2)<---------ANAC58 --->MYB59   <----------DOF2 <---------GLK1(1)        <---------RAP2.6(2)<------ZmHOX2a(1)    ------- ----TOE2(3) <---------DAG2  --------->GLK1(1)       <---------LBD16  <------NtERF2--------->LBD16   gtatgaatttcgtaactttacgaccgcgagggaatccgagttcgcggtagagttttccggcgtcgtctagtcggaggattcgctccggttgctttgagat  5731900                                       ----------->HVH21                                      --------->LBD16                                     <---------ANAC46                                     <---------O2                                     <---------ANAC58                          <-----------RAV1(1)                                     <---------ANAC58                  <--------P                                     --------->O2                      <---------WOX13(1)                                     <---------ANAC55(2)              <-------GAMYB                                 <-----------HVH21                   <------MYB83          ------>ZmHOX2a(2)     <---------ANAC58                     <---------MYB46(3)          ===============HOX2a_HOX2a ----------->GT1                 <------MYB46(1)        <---------ARR14(2)      <---------ANAC58                    <---------AtMYB61   --------->ATHB12        --------->ARR14(2)     <-------TEIL                         --------->MYB59   <---------WOX13(1) XXXXXXXXXXXXXXX>MIR1886.2<---------GLK1(1)                 --------->ALFIN1 <---------ANAC58       < ---At4g35610             --------->GLK1(1)               <-----------RAV1(1)<---------ANAC46<------MYB83 -->At4g35610     <------ZmHOX2a(1)<---------ANAC46       --------->ALFIN1   <---------ANAC58<------MYB46(1)   gaattctttggatcggattaggaatcggaaatgtgcgtcgcgtgaaacgagtgattccaagtgtgggagtttggttgattcgtgttggattgatttggtt  5732000     --------->GLK1(2)    --------->ARR14(2)    <---------ARR14(2)       --------->AHL20(2)              <---------TOE2(3) <---------ARR14(2)    <---------GLK1(2)        <---------AHL20(2)     --------->ICU4             --------->GLK1(2)<----   <------NtERF2         <------------------------ANAC81<------ZmHOX2a(1)      --------->ARR14(2)  -- <---------ANAC58    <----------DOF2           --------->ANAC55(2)          <---------AtMYB61   <---- <---------ANAC58    <---------DAG2            <---------ANAC58           --------->ALFIN1 <---------ZAT6 <---------ANAC46---------->ID1                <---------ANAC58        --------->DAG2     <---------TOE2(3) ---------LBD16 <-----------GT1                <---------ANAC46      ---------->DOF2      <---------TOE1(3)   ctggcggattctggtttttttcgctttttttttaatttgtctggtgttttcgtgatgaggaatgaggttgagaaaggtgaggttctgaaattagggttag  5732100                              <---------ARR11(3)                                              <------                              --------->ARR11(3)                                              <------                             <---------RVE1(1)                                          <------ZmHOX2a(1)  <---------LBD16    <---------LBD16                         --------->ANAC58        --------->YAB1 -----TOE1(3)       --------->ALFIN1               --------->MYB52(1)          --------->ZAT6 <------ ------->ALFIN1   --------->CCA1(2) <---------TOE1(3)        --------->ANAC46 <---------At5g28300 -----TOE2(3)  ----------->ARR10    <---------TOE2(3)        --------->ANAC58<-----------GT1*TSS   --   ggtttggggaagaagatgagatttgggggagagattttagggttcttgagaagaaacgaagccaagccatttgagtaatttacagtatcaggatttaaga  5732200      <---------At4g35610   <------NtERF2      --------->At4g35610  <-----------HVH21  --------->YAB1    <---------ICU4  -------->HAHB4    --------->YAB1  <---------ICU4   <---------YAB1  --------->LBD16           --------->ALFIN1 <---------YAB1   --------->AHL20(2)           <------------CBF ---TOE2(3)       <---------AHL20(2)      ----------->GT1  <-----------RAV1(1) ---TOE1(3)       <---------AHL20(1)  ---------->DOF2      <---------ZAT6 ---YAB1         --------->YAB1   <---------ANAC46    <----------DOF2    --------->CCA1(2) ------->YAB1   <---------YAB1---------->DOF2 --------->ATHB12      <----------DOF2   ttaataatagctgagtttattataatggccgtcgaagcgggaaagagtttattgggctttagtgttgggcctttgatatgggctaagaaaactgaaaact  5732300                                                                                             <-------                      <---------ANAC46                                                       --------                      --------->ALFIN1                                                       <-------                    <---------ANAC58               <---------ANAC58                          --------                    <---------ANAC46               <---------ANAC58                       <---------ANAC46                    <---------ANAC58              --------->ZAT18                       <---------ZAT14           --------->ALFIN1      >>>>>>>>>TBF1    <---------ZAT18   <---------LBD16     --------->ZAT14   aagcattgtaaatgtgttgatggtgtgtgtaagaagaagaatacatgtctagtgcgttccatagaaggttttcggatgagacatgagaagtgaagtgaac  5732400                                                                              --------->ARR14(2)                                                                              <---------ARR14(2)                                                                       <---------ANAC46                       <---------AHL20(2)                              <---------ANAC58                  <---------MYB52(1)                                   <---------ANAC58                 <-------GAMYB                                     <-------GAMYB<-------TEIL        -                 <------------------------ANAC81                  <---------DEAR3(2)             ----           --------->GLK1(2)                                      <---------MYB46(3)             ----           --------->ARR11(3)      <---------ANAC46              <---------RAP2.6(2)       <---------TOE1(3) --ZAT14   <---------ARR11(3)      <---------ANAC58              <---------DEAR3(1)      ---------->DOF2 ->ZAT18  --------->RVE1(1)        <---------ANAC58         <----------DOF2<---------ANAC46<---------TOE2(3) --ZAT18  --------->CCA1(1)     <----------DOF2       --------->YAB1<---------ARR14(2)  <---------AHL20(2) ->ZAT14--------->AHL20(2)   <-----------GT1      ------->TEIL   <---------ANAC46   --------->AHL20(2)   ttgttggaaaaaaaatctcggttattttttttttctttcttgtataaacatgtatatgatcactttggcggtttcttgtggatacattatataaaggtta  5732500                                                                                             ------>ZmHOX2a(2)                                                                                            <------ZmHOX2a(2)                                                                                           --------->ARR14(3)                                                                  <-------TEIL             --------->ARR11(3)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->ICU4                        <---------ARR11(3)     ----------->GT1                               --------->WOX13(1)<---------CCA1(2)     <---------     --------->LBD16                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->AHL20(2)   <---------LBD16                           <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------AHL20(2)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->AHL20(1) -------->WOX13(1)                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)----------->TBP<---------ARR14(3) ----->ANAC58--------->AHL20(1)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------AHL20(1) ----->ANAC58<---------AHL20(1)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------AHL20(2)   agcaatccggttaaaaatattagactctatacttctaactcaaaatcaattggcaattagtggagaagttcatctcttatatatattatttaagatctta  5732600                                                                  ------>ZmHOX2a(2)                                                        --------->ANAC46                                               <---------MYB46(3)*TSS                                           <---------YAB1       --------->ARR11(3)                                           --------->ICU4       <---------ARR11(3)    <---------AHL20(2)          --------->ANAC46        --------->ANAC58               <------ZmHOX2a(2)   --------->AHL20(2)         <---------ALFIN1<---------YAB1<------------CBF <---------LBD16   <-----------TBP  <---------ARR11(3)----------->HVH21 --------->ANAC58<---------AHL20(1)    <------ --ARR10       ------------>CBFxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <---------ARR11(3)    -------   ttcgattttatatgtggaacaatatccctgatacactccctcgacatgatggttcttctcgccattgatctctatatattcgggcatggatcaactagct  5732700  Previous    Next  AGI:  At4g08940.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01037.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN62585.1); contains InterPro domain Protein of unknown function DUF860, plant (InterPro:IPR008578) Range:  from: 5730794    to: 5732192    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g08945.1    Description:  transposable element gene. copia-like retrotransposon family, has a 5.2e-16 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element) Range:  from: 5732665    to: 5733066    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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