Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             ----------->GT1                          -                                                          <---------ANAC46                        ---                                                ---------->DOF2                                   <--                                           --------->AHL20(2)                                     <--                                          <---------AHL20(2)                          <---------ANAC46             <---------ARR14(2)           --------->AHL20(2)      <---------ICU4      ----------->GT1  <------MYB46(1)                    --------->ANAC58   <---------ANAC46            <---------ANAC46<  <------MYB83   ----------->GT1     ----------->GT1   <---------AtMYB61  <---------ATHB12        --- ----->ATHB12--------->ARR14(2)      --------->ANAC58  --------->ALFIN1   --------->AHL20(2)     <---   gatttggttcaactggattgggataatatttcaagtggaaagaaataaataaaagttgtggtggaaaattattccaataaatctcgtcgtgtgaattgaa  5723700          <---------ZAT6       ------>ZmHOX2a(1) <---------ICU4                                                                            <<<<<<<<<<GT-3b -------->ICU4                                                                        <---------AHL20(2) ------>YAB1                                                                          --------->AHL20(2) ------HAHB4                            ------->GAMYB                                 <---------AHL20(1) -------ICU4                           --------->MYB46(3)  <----------DOF2        <---------AHL20(2) ---------YAB1         <-----------GT1------->TEIL    <<<<<<<<<TBF1              <---------YAB1 ----->ATHB1----------------------->TaNAC69(2) <---------ARR11(3)               <---------AHL20(2) ------ATHB12 --------->WOX13(1)      -------->P   <<<<<<<<<TBF1              <---------YAB1   <-----   tcattattcctagtgtcaatcttcttcacctctctctatcaacctccaatttcttcttcttctttttttttagataacttatttttattttatttttctt  5723800                                                                --------->AHL20(2)                                                                <---------AHL20(2)                                                                <---------AHL20(1)                                                                --------->AHL20(1)                                                            <---------YAB1                                                           --------->AHL20(2)                                                           <---------AHL20(2)                                                           --------->AHL20(1)                                                          <---------ICU4                                                          --------->YAB1                                                         <---------YAB1                                                         --------->ICU4                                                       <--------ATHB1                             <---------AHL20(2)        <---------ICU4                            <---------AHL20(2)         --------->YAB1                         <---------AHL20(1)            --------->ATHB51                         --------->AHL20(2)            -------->HAHB4                         <---------AHL20(2)            <--------HAHB4                         <---------ICU4               <---------ATHB51                         --------->YAB1               --------->ICU4                         <--------ATHB1               --------->AHL20(2)        <---------AHL20(1)                        --------->ICU4                <---------YAB1            --------->ARR11(3)                    --------->AHL20(2)              --------->YAB1              <---------ARR11(3)        <----------DOF2 <---------YAB1             <---------AHL20(2)           --------->AHL20(1)---        <---------DAG2--------->YAB1            --------->AHL20(2)       ----------->GT1          <--     <-----------GT1--------->AHL20(1)         <---------AHL20(2)<---------AHL20(2)  <-----------GT1   <-----------GT1 --------->YAB1            --------->YAB1<---------AHL20(1)  <---------AHL20(2) --- -----DOF2  <----------ID1  --------->AHL20(2) --------->AHL20(2)--------->AHL20(2)<---------AHL20(2)   tgatttttcactttaagacaaaaataataattttatatttctaccaaaaataaataataattataatttaataagagataaatattttttcaaactgtaa  5723900                                                                                               <-----                                                                                            <--------                                                                                            ---------           --------->AHL20(1)                                                               ---------           --------->AHL20(2)                                                         ----------->GT1           <---------AHL20(1)                                                         <----------ID1           <---------AHL20(2)                                                        --------->MYB59          --------->AHL20(2)                                                   <---------------AGL15          <---------AHL20(2)                                                  --------------->AGL15       --------->AHL20(2)     --------->AtLEC2                                <---------------AGL15      --------->AHL20(2)   <---------AHL20(2) <---------AHL20(2)             ----------------->AGL2 ------>TOE1(3)  ---------->DOF2    <---------ICU4                           ----------------->AGL1 -------MYB59  --------->AHL20(2)  <---------ARR14(2)                        ----------------->AGL3 ------>TOE2(3)<---------AHL20(2)  --------->ICU4                       <----------DOF2<------ZmHOX2a(1)   cctaaacaataaataaattaaaagagaaattaatgcaaatattgctatatttttgggttattacttagagactactttgtccaaaattaggaaaaatctt  5724000        <--------ATHB1        <---------ICU4 <---------ANAC58 <---------ANAC58                                                           --------->CCA1(2) <---------ANAC46                                                         --------->YAB1 -----DOF2                                                             ---------->DOF2 -ARR11(3)                                                      --------->CCA1(2) >GLK1(2)                                                      --------->ARR11(3)              <----- >ARR11(3)      ---------->DOF2                                <---------ARR11(3)<----------DOF2    *TSS   tttgggtgaataattcccaaaagtatagttgcattttgccagagaggcactcagagagagagagagatattcgtaaagataagctttttttttttttttg  5724100                                                                         <---------HSFB2a(2)                                                                         <---------HSFC1(1)                          ---------->ID1                           <---------------AGL15                        <-----------RAV1(1)         ----------->HVH21    --------->HSFB2a(2)        <                   <------------------------ANAC81<---------ANAC55(2)    --------->HSFC1(1)        --              <----------DOF2                     --------->ANAC55(2)<---------GLK1(1)        -------           --------->ARR11(3)         <---------HSFB2a(2) --------->MYB52(1)                 --------           --------->GLK1(2)          --------->HSFB2a(2)---------->DOF2<---------LBD16     --------- ------GT1 <---------ARR11(3)  <----------DOF2--------->CCA1(2)   ----------------->AGL1 --------->AHL20(2)   ccttctcatcaaaaatctttttttttttgttgtctttcttctcgagagagataagtgaccaaagggtttcgatttctggaaatagtttgaataaaaaagt  5724200                                                                                       <-------GAMYB                                                                                  <-----------RAV1(1)                                                                               <---------ARR14(2)           --------->ATHB12                                                  <---------MYB46(3)     --------->ANAC55(2)                                                    <---------AtMYB61 <---------AHL20(2)                                                       <---------MYB46(3) ---------ICU4         ---------->DOF2                             --------->ARR14(2) <---------MYB46(3) ------->ICU4     ---------->DOF2                                  <---------ARR14(2) --------->MYB55(2) ---->GT1  <---------ICU4                                          ------->TEIL--------->ARR14(2) ->DAG2   --------->ICU4                                          <---------CCA1(2) <---------MYB52(1) ->DOF2   <---------YAB1                                       <-----------------AGL2<---------AtMYB61   aatttttatgtgattattggcaaagaaaagttttagttttttttagtttgtgagagatgtctggttctgtatctggttgtggttctggtggttgtagtat  5724300                             --------->ARR11(3)  --------->At4g35610                      <-------GAMYB           --------->ZAT2                ------>ZmHOX2a(2)             --------->At4g35610                           <--------               <------ZmHOX2a(2)              <---------At4g35610                          <------NtERF2              --------->AGP1 <---------ARR11(3) ----------->RAV1(1)            <---------MYB52(1) >>>              --------->ARR11(3)           <---------At4g35610         <---------WOX13(1)  --------->At4g35610              <---------ARR11(3)           --------->At4g35610       --------->ATHB12     -----------             <---------GLK1(1)         <----------DOF2               <---------MYB46(3) --------->ZAT18             --------->GLK1(1)  --------->GLK1(2)<---------At4g35610<---------ATHB12    <---------ZAT18   tgtatggtttagaagagatcttagggttgaagataatccagctttagcagcagcagtaagagctggtccagtgattgctctgtttgtttgggcaccagaa  5724400                                 --------->ALFIN1                                 <---------AtMYB61                             --------->HSFB2a(2)                <---------GLK1(2)                       ----------->GT1                     --------->ZAT2     --------->ZAT18  <------MYB46(1) <------NtERF2        <---------ZAT2    <------ZmHOX2a(1) <------MYB83<---------MYB46(3)       --------->At4g35610 ---RAV1(2)         <--------P   <---------DEAR3(1)        <---------At4g35610              --------- >>>>>>TBF1     <-----------RAV1(2)  <---------MYB46(3)  <-----------RAV1(2)            <---------ANAC58 >RAV1(1)   --------->YAB1   <---------HSFB2a(2)  <---------MYB52(1)                    <---------ANAC58   gaagaaggacactatcatccaggtagggtttctaggtggtggctcaagaacagtttggctcagcttgattcttctcttagaagtcttggtacttgtctta  5724500                   <-----------RAV1(1)                   <---------ZAT6                                 <------ZmHOX2a(2)             <---------ZAT6                                      --------->ARR11(3)         ------>ZmHOX2a(2)                                       <---------ARR11(3)        --------->CCA1(2)                                        --------->ARR14(2)        <------ZmHOX2a(2)                                        <---------GLK1(2)       --------->ARR14(2)                                        <---------ARR14(3)       --------->AGP1                                            <-----------ARR10       <---------ARR14(2)                                        --------->ARR14(3)       --------->ARR11(3)                                        <---------ARR14(2)       <---------ARR11(3)                                        --------->AGP1              <-------       >>>>>>>>>GATA-3                                          <---------CCA1(2)          <-------GAMYB       >>>>>>>>>GATA-1                                   <---------ANAC58                 <----------       >>>>>>>>>GATA-4                              <-----------RAV1(1)            <---------AtLEC2--       >>>>>>>>>GATA-2  <---------ANAC58       >>>>>>>>>>>>>>>>>LFY------>ZmHOX2a(2)      <---------MYB46(3) ->ID1--------->GLK1(1) <---------ANAC58----------->GT1  <---------ANAC58   <---------ATHB12<--------   tcaccaagagatctactgatagtgttgcttctcttcttgatgttgttaaatccactggtgcttctcagatcttcttcaaccatttgtatggtctgttgtt  5724600  Previous    Next  AGI:  At4g08920.1    Description:  CRY1 (CRYPTOCHROME 1). Identical to Cryptochrome-1 (CRY1) [Arabidopsis Thaliana] (GB:Q43125;GB:Q43126;GB:Q8L7Y1;GB:Q9ASZ2;GB:Q9M0S9;GB:Q9ZPF0); similar to CRY2 (CRYPTOCHROME 2) [Arabidopsis thaliana] (TAIR:AT1G04400.2); similar to CRY2 (CRYPTOCHROME 2) [Arabidopsis thaliana] (TAIR:AT1G04400.1); similar to cryptochrome 1 [Nicotiana sylvestris] (GB:ABB36796.1); similar to cryptochrome1 [Brassica napus] (GB:CAG28805.1); similar to cryptochrome 1 protein [Brassica rapa] (GB:ABI31780.1); contains InterPro domain Cryptochrome, plant (InterPro:IPR014134); contains InterPro domain DNA photolyase, N-terminal; (InterPro:IPR006050); contains InterPro d Range:  from: 5724100    to: 5727250    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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