Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        <----------DOF2                                                              ------->MYC3   ------>ZmHOX2a(2)          <----------DOF2                                    <---------TOE2(2)  <------ZmHOX2a(2)     <---------ANAC46                               <---------AHL20(1) <---------ARR11(3)     <---------ANAC58             ----------->GT1  ----------->TBP    --------->ARR11(3) --------->ARR11(3)     <---------ANAC58    --------->YAB1        ------------>CBF <-------MYC3 --MYB46(3)     --------->MYB59          <----------DOF2        --------->ANAC46 <---------TOE1(2) >ALFIN1        <---------TOE2(3)       <---------ANAC58       <-------TEIL     <---------ALFIN1 -DEAR3(1)      <---------TOE1(3)       <---------ANAC58   <-------TEIL<---------ARR11(3)<---------ARR11(3)   cacgatctctttcaagtttaggttttgcgtttctttttgatggctttcatgaagaaggtgatacatacaccaatatatactcccacgtttagattttaag  5591300                                                                           <---------AHL20(1)                                                   --------->MYB46(3)      --------->ARR11(3)                                               ------------>CBF            --------->AHL20(1)                                         <---------ANAC58        --------->ICU4                        ----------->GT1  <------MYB46(1)         <---------YAB1  <---------TOE2(3)---                <----------DOF2          <------MYB83          <---------At4g35610 <------ZmHOX2a(1)             ------->TEIL                <---------ANAC58xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   -------        --------->At4g35610             --------->MYB59xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <---------ANAC46   ttattagggaagatgaacctttgatgggctaaaatatggagttgggtctcacaatcaccgatgtctgatgatggaaatattttgaggaaacttgtgtatg  5591400          --------->MYB111(2)                                          <---------ICU4          <---------MYB46(3)                                           --------->ATHB12          --------->MYB46(2)                                          <---------YAB1          --------->MYB111(1)                                         --------->ICU4         <--------P      --------->DAG2                             <---------ICU4    <---------TOE2(1)   ---------->DOF2                            --------->ICU4                ----    <---------TOE1(1) <------ZmHOX2a(1)                    <------ZmHOX2a(1)               --------->ANAC46 ------>REM1(2)      <----------ID1                  <----------DOF2--------->YAB1    <-------------- >TEIL ------------>MYB.PH3(2)                --------->CCA1(2)    <---------ATHB12  <---------ANAC46   tgtagaacgaggtagttagtaagaggaaaagcatgggctaagtattagagatgggcttagaggaaaacaatgatgattagaatattggtttgtacgaagc  5591500                                                                                    --------->AHL20(1)                                                                                    <---------AHL20(1)                                                                                    --------->AHL20(2)                                                                                    <---------AHL20(2)                                                                                    --------->ARR11(3)                                                        ------>NtERF2          ------->GAMYB                <------MYB46(1)                        <---------ALFIN1      --------->At4g35610                <------MYB83               <---------AHL20(2)               --------->MYB52(1)                ----------->GT1           --------->AHL20(1)      <---------YAB1    <---------ARR11(3) ----->TOE2(3) <---------TOE2(3)          <---------AHL20(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) -AtSPL8       --------->MYB59--------------->AtSPL8   --------->DEAR3(1)--------->ZAT6          <---   cttattagtttgtgtattaggtttaaaatcgatatgtacacatatatatttgtatcgccaccttcaatatgaataacacaactgaatatattcagagcaa  5591600                                                     --------->ATHB12                                                    <---------YAB1                         ------>MYB83          <----------DOF2                         ------>MYB46(1)      <---------ANAC58                               --------                         -------->P           <---------ANAC58                            --------->YAB1              <---------bZIP60(1)         <------------CBF                                <---------ICU4              <---------GLK1(1)         --------->ICU4       <---------ICU4             --------->ANAC58              --------->bZIP60(1)<---------ANAC58   --------->ICU4                      --------->ANAC58         --------->ANAC55(2)<----------DOF2   <---------ANAC46                 ----------->GT1     <----------DOF2   <---------MYB59  <---------YAB1<------------CBF       <------------CBF<------- ------ATHB12<---------ARR11(3)  <---------ANAC58<---------YAB1              <---------GLK1(2) *TSS   tctttgactttacatgatatcagagcctacctttagcctgtgaagattgctttgattattgaaatattacaaaaatccagattgtgaatcaagcatgact  5591700                           --------->LBD16                           --------->HSFB2a(2)                           <---------HSFB2a(2)                          <---------ANAC46                                                     ------                          <---------LBD16                                                      ------                         <---------LBD16                         <----------DOF2              -------                      --------->At4g35610                    <------ZmHOX2a(1)          --------->At4g35610                      <---------GLK1(1)                 <---------REM1(1)               <---------At4g35610                      --------->GLK1(1)               <---------MYB46(3)           <---------YAB1                     --------->ARR11(3)              --------->ALFIN1            --------->YAB1------ ->ATHB12            <---------ARR11(3)            <---------At4g35610       ------>ZmHOX2a(1)------- --WRKY18(1)     ---------->DOF2                 <-----------RAV1(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   ggaactgaagataaatacacaaagagctccgggaaactcatcgtcggaagttcaggtggtgaaggagctttgatgtctccttatcatcttagctcaaccg  5591800                                                                                                   --     --------->ORA47(1)                                                         <---------ANAC58  <--     --------->ANAC46                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <--   --------->RAP2.6(3)                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---------SPL7  --------->MYB52(1)                        --------->YAB1                      <---------ANAC58<---- --->DREB2C(2)                              <---------ICU4                  <---------ANAC58 -------- --->At1g77200                       <------ZmHOX2a(1)                      <---------ANAC58--------- -->MYB46(3)               <-----------RAV1(1)<---------YAB1            <---------GLK1(1)<---------ANAC58 ->GAMYB                --------->GLK1(2)  --------->ICU4               --------->GLK1(1)<---------ANAC58 -->DEAR3(2)--------->ALFIN1<-------GAMYB  <---------ATHB51       ----------->TGA1   <-----------RAV1(2)   acaataccggccaagtgttgacaccaattctgttgaataggaacaattatgaacgatggtccaaattgatgacgaattccttgcgaaccaggcgtaaggt  5591900                                                                                        <---------ARR11(3)                                                                                        --------->ARR11(3)                                                                                        --------->ARR14(2)                                                                                        <---------ARR14(2)                                                                                        ------->TEIL                                                                                        <---------AGP1                                                                                   --------->At4g35610                                                                             <---------YAB1                                                                            <---------ARR11(3)     <---------AHL20(2)                                                     --------->ARR11(3) --------->GT1                               <---------REM1(1)             --------->YAB1          <- ----MYB46(1)                    --------->ALFIN1                 --------->ZAT14<-----------RAV1(2) ----MYB83                    <---------DEAR3(1)                  <---------ZAT18<xxxxxxxxxxxxxxxxxxx ----P                     ----------->HVH21--------->ARR11(3) ----------->GT1--------->YAB1       <- ->DAG2       --------->ICU4--------->MYB52(1)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)------>ZmHOX2a(2) >SPL7<---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <-   agggttttttaatggaagtattaagcgaccagacggtgatggagaagatgtagaacgatgggagatggtgaactcgatgatcatcagatggatctacagt  5592000                                                                                            xxxxxxxxx                                                                                         --------->TGA1a            --------->TOE1(2)                                                            <---------TGA1a        ---------->DOF2                                                                  --------->O2  --------->REM1(2)         --------->ZAT6                                        <---------MYB52(1) --------->ALFIN1           <-----------GT1                                      <-----------HVH21 --------ANAC58           <---------ARR11(3)             <---------ANAC46  ========================bZIP_DOF xxxxsmallRNA(se3)   <---------YAB1                   --------->ALFIN1     <----------DOF2 ---------- --------ANAC58    --------->YAB1       --------->ARR11(3)          --------->ARR11(3)   <---------O2 --------ANAC46   <------ZmHOX2a(2)     <---------ARR11(3)         <---------GLK1(1)  ----------->HVH21   agcgtggagccaaagctacgatcatcaatatcactagttgaagatgtttctgagatgtggagtagtttgaaatctcgcttctctgttagcgacgggacaa  5592100                          <---------SPL7                                                            -                    ------>ZmHOX2a(2)                                                              <-                  <-----------ARR10                                                                --                  <---------ARR11(3)                                                        ---------             --------->ANAC46                                                               <--------           <---------ALFIN1                                  <---------YAB1                <---------GLK1(1) xxxxxxxxxxxxxx>smallRNA(se3)                     --------->At5g28300                      --------->GLK1(1) ->HVH21--------->ANAC46<---------At4g35610   --------->MYB52(1)     --------->ATHB12     <---------ARR11(3)   gagagcatcaactccacgctgatctcagcgtatgcaaacaagatggacaaacggtagaagaatattatggacgattgaagattatttgggatgatatctc  5592200  Previous    Next  AGI:  At4g08765.1    Description:  transposable element gene. copia-like retrotransposon family, has a 5.2e-158 P-value blast match to GB:AAB82754 retrofit (TY1_Copia-element) (Oryza longistaminata) Range:  from: 5591695    to: 5596275    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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