Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                  <--                                                                                                 ----                                                                      <---------ARR11(3)      <------                              --------->HSFC1(1)                      --------->ARR11(3)   <---------ARR11(3)                       <---------AHL20(2)                       ---------->DOF2            --------->ARR14(2)                      <-----------GT1                        --------->TOE2(3)             <---------ARR14(2)           --------->WOX13(1) <---------HSFC1(1)         <------ZmHOX2a(1)                 --------->ARR11(3)          --------->AHL20(2)  <---------HSFB2a(2)      --------->ANAC58  <-----------GT1  <---------HSFB2a(1)          <---------AHL20(2)  --------->HSFB2a(2)      --------->ANAC58--------->CCA1(2) ----------->ARR10   gggttttgacaattaatcagtttatttcatttctagaatcgaaactgaaattgaagtaaggaacattaaagagatatacccattgtgaaggaagatttgt  5567300                                                          --------->LBD16                                               <---------ARR11(1)                                               <-----------ARR10                                               --------->ARR14(2)         <---------ICU4                                               <---------ARR14(2)         --------->YAB1                                               ------->TEIL <---------ANAC46                                              <---------CCA1(2)          <---------ATHB12                                              <---------ARR14(1)        ------>MYB46(1)        <-----           ------->TEIL            --------->CCA1(2)      ------>NtERF2 ------>MYB83           <-----    <---------WOX13(1)            <----------ARF1 <----------DOF2     --------->AtMYB61        <----- ---------WOX13(1)         <------ZmHOX2a(1)<---------ANAC55(2)  --------->SPL7          <----------DOF2 -------WRKY18(1)       <-----------RAV1(2) --------->ANAC55(2) <------ZmHOX2a(1)<---------CCA1(2) ----->WRKY38(1)    <---------At4g35610--------->ANAC58  <---------DEAR3(1)    --------->YAB1  <----- ---MYB46(3)        --------->At4g35610--------->ANAC58 <---------LBD16--------->WOX13(1)<---------DAG2   tgactgatggatgaatcgagtctgcttcaggattgagagacaagtctcgtatcttttctccggcgaggacgaccaatcatctcataactccctttttgct  5567400                                                                                              <------                                                                                              -------                                                                                  --------->ARR11(3)                                                                                  <---------ARR14(2)                   ----------->RAV1(1)                                            <---------ARR11(3)            <---------ARR11(1)                                                    --------->ARR14(2)            --------->ARR11(3)                                                   <---------GLK1(1)            <---------ARR11(3)                           <---------ANAC55(2)     --------->GLK1(1)     --------->ARR11(3)                                 <-------TEIL             --------->RVE1(1)     <---------ARR11(3)                                *TSS                     <---------ARR11(3)     --------->GLK1(2)    --------->MYB52(1)       <---------AHL20(2)           --------->ARR11(3) ----ANAC46 --------->ARR14(2)                     --------->AHL20(2)           --------->ARR14(2) ----AtLEC2 <-----------ARR10                 --------->AHL20(2)         <-----------GT1    <-------- ----ANAC58 <---------ARR14(2)                <---------AHL20(2)    <------ZmHOX2a(1)       --------- ----ANAC58<---------CCA1(2)                 --------->AHL20(2)   <---------TOE2(3)   ------>ZmHOX2a(1)   tgaagaaaatctcatatcttcccacaaaaaacagaacctatttgtgatttaatttaaatacataaatgaaggattttaccaagatatcctctcactttaa  5567500                                                         ------>ZmHOX2a(1)    >>>>>>>>>MYB2                                <---------MYB52(1)      <---------GLK1(1) ---AHL20(2)                                  ---------->ID1   ---------->DOF2      --------->ARR14(2) -->AHL20(2)                                 <-----------GT1--------->ANAC58        <---------ARR14(2) --DOF2                                   --------->AHL20(2)--------->ANAC58  --------->LBD16 ------>AGL15    --------->AHL20(2)  ------------>CBF<-----------GT1--------->CCA1(2)   tttgaaaaccaaaaaaaaaaaaaattcagactcaacacttacaattttttcgttttttcctcactcaaagaaacgagttccgagagaaaccgctctctct  5567600                     --------->ANAC58                         ------->TEIL                     --------->ANAC58         <---------GLK1(2) --------->TOE2(3)                     --------->ANAC46    --------->ANAC46  --------->ANAC58               --------->GLK1(2)              <---------ZAT18        <-----------HVH21     --------->ANAC58              <---------GLK1(2)              --------->ZAT14       <----------DOF2        --------->ANAC46           --------->YAB1     <---------GLK1(2)        ------>ZmHOX2a(1)       --------->MYB46(3)      <----------DOF2  xxxxxx   ctctctcgattctctgtgaacacaaacaactcctctccctttcactcaaattctcaacaacacgaaccctaattctctctcttttctctcagaatcgttt  5567700                           --------->DEAR3(1)                          --------->RAP2.3(1)                          <------NtERF2                         ------>NtERF2                                                  ------->GAMYB                         --------->LBD16 <------NtERF2                                 --------->MYB46(3)                        <---------ATERF1(2)                                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        --------->DEAR3(1)                                   --------->At5g28300                       <---------RAP2.6(2)                                  --------------------->WRI1                   ---------->DOF2      ------>NtERF2                       ----------->GT1                --------->TOE2(3)      --------->DEAR3(1)               ----------->HVH21<---------LBD16                --------->TOE1(3)      *TSS                     --------->ALFIN1       ----------->HVH21               --------->ZAT6          --------->RAP2.6(2)     <------ZmHOX2a(1)     --------->MYB52(1)            ------>ZmHOX2a(1)          <---------ATERF1(2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          --------->YAB1--------->ATERF1(2)   ---------->DOF2 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    ------>ZmHOX2a(1)<-----------RAV1(1)<xxxxxxxxxxxxxxxxsmallRNA(i)    --------->MYB46(3) xxxxxxxxxxxxxxxx>smallRNA(i2)  ------------>CBF       <------ZmHOX2a(1)<---------MYB52(2)     <-----   cttctcctctaatcctaaccctaatgccgccgaaaacaatgccgcctctaaagaagaggaagagaggagttggaacgaccgtgaaatcaacgacggagga  5567800                                                     <---------MYB52(2)                                                     <xxxxxxxxxxxxxxxxsmallRNA(s)                                                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                <---------MYB52(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                <xxxxxxxxxxxxxxxxsmallRNA(s)                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            --------->ATERF1(1)    <xxxxxxxxxxxxxxxxsmallRNA(i)                            <------NtERF2        <------NtERF2                           --------->LBD16      --------->ANAC58                           --------->ANAC58     --------->ANAC58                           <---------ATERF1(1)  ------>NtERF2                           ------>NtERF2        <---------ATERF1(1)                           --------->ANAC58     --------->LBD16                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          --------->RAP2.3(3)  <---------DEAR3(1)                          --------->RRTF1(2)   --------->DREB2C(2)         <---------DOF5.7(2)                          --------->DREB2C(2)  --------->ATERF1(2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          --------->RAP2.3(2)  --------->RAP2.3(3)       --------->DOF5.7(2)                          --------->ATERF1(2)  --------->DEAR3(1)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                          <---------ATERF1(2)  <---------ATERF1(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                          --------->DEAR3(1)   --------->RRTF1(2)    ------>NtERF2               xxxx                          <---------DEAR3(1)   --------->RRTF1(3)   --------->RAP2.3(2)       <------NtERF2                          --------->RRTF1(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        ---------                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      ----------->HVH21       ---------                         <---------LBD16       --------->RAP2.3(2)  --------->DEAR3(1)      ---------                         --------->ORA47(2)   <------NtERF2         --------->At1g77200     ---------                         --------->ERF1       --------->ATERF1(1)   --------->RAP2.3(3)     ---------                         --------->RAP2.3(1)  <---------LBD16      --------->ORA47(2)       ---------                         --------->ATERF1(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        --------->ORA47(2)                         <------NtERF2        --------->RAP2.3(1)  --------->DEAR3(2)      --------->DEAR3(2)                        <---------RRTF1(1)    --------->ERF1       --------->RAP2.3(1)     --------->RAP2.3(1)                        ------>NtERF2         --------->ORA47(2)   --------->ATERF1(1)     --------->ERF1                        <---------ATERF1(1)  <---------RAP2.3(1)   <------NtERF2           xxxxxxxxxx                <------ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<------NtERF2        <------NtERF2           <xxxxxxxxxxxxxxxxsmallRNA(s)      <---------RRTF1(1)    --------->ERF1          --------->ATERF1(1)           <---------MYB52(2) <xxxxxxxxxxxxxxxxsmallRNA(i)        <---------RAP2.3(1)     ------>NtERF2          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------ATERF1(1)  ------>NtERF2           <---------ATERF1(1)         <xxxxxxxxxxxxxxxxsmallRNA(i)        ------>NtERF2        <---------ATERF1(1)     <---------RAP2.3(1)       <------NtERF2  --------->ZAT18       <---------DEAR3(1)  <---------ABI4(2)       <---------ZAT14      ------>NtERF2   <---------ABI4(2)    --------->ZAT18      <---------ZAT14         <---------ABI4(2)     <---------DEAR3(1)<---------DEAR3(1)  <---------ZAT14      --------->ZAT18     xxxxxxxxxxxxxxxx>smallRNA(i)     --------->ATERF1(2)<---------RAP2.3(1)<---------ABI4(2)xxxxxxxxxxxxxxxx>smallRNA(i)--------->ZAT18   <---------ATERF1(1)<---------ZAT14<------ZmHOX2a(1)    <------ZmHOX2a(1)--------->MYB52(1)------>NtERF2  ----------->HVH21  <---------ATERF1(1)  <---------ATERF1(1)  <---------ATERF1(1)<------ZmHOX2a(1) < -ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ATERF1(1)--------->DREB2C(2)<---------ATERF1(1)   gactgcgacggcaacgaaggagactgcgccggcaacgaaggagactgcgccggcaacgaaggagactgcgccgacgataacgaaggagactgcgccgacg  5567900                <---------MYB52(2)                <xxxxxxxxxxxxxxxxsmallRNA(s)               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              <xxxxxxxxxxxxxxxxsmallRNA(i)            --------->ATERF1(1)            <------NtERF2           --------->ANAC58          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <---------DEAR3(1)          --------->DEAR3(1)          <---------ATERF1(2)          --------->RRTF1(2)          --------->DREB2C(2)          --------->RRTF1(3)          --------->RAP2.3(3)         =====================================HOX2a_HOX2a          --------->RAP2.3(2)    <------NtERF2 xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <---------LBD16         xxxxxxxxxxxxxxxx>smallRNA(s)         --------->ORA47(2)     ------>NtERF2  <---------ATERF1(1)   ======================HOX2a_HOX2a         <------NtERF2         ----------->HVH21        ------>NtERF2<---------LBD16         --------->ATERF1(1)   --------->RAP2.3(3)      <-----------HVH21         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------ARR14(2)     ------>ZmHOX2a(2)         --------->ERF1        --------->At1g77200   <---------At4g35610        <---------RRTF1(1)     --------->DEAR3(1)    --------->At4g35610        ------>NtERF2          --------->DREB2C(2)  <---------DEAR3(1) --------->LBD16        <---------RAP2.3(1)    --------->RAP2.3(2)<-----------HVH21 <------ZmHOX2a(2)        <---------ATERF1(1)   --------->ATERF1(1)--------->DEAR3(1) --------->CCA1(2)       <---------DEAR3(1)     --------->DEAR3(2)--------->DEAR3(2)  --------->ARR14(1)      <---------ABI4(2)       <------NtERF2   --------->ARR14(2)   --------->ARR11(1)      <---------ZAT14         --------->ERF1 <------ZmHOX2a(1)     <---------ARR14(3)      --------->ZAT18         --------->RAP2.3(1)--------->RAP2.3(2)=======================HOX2a_HOX2a     <---------ATERF1(1)     <---------RAP2.3(1)--------->RAP2.3(1)--------->AGP1 xxxxxxxxxxxx>smallRNA(s)  <---------ZAT14   --------->ATERF1(1)   --------->ARR11(3) >At1g77200--------->LBD16 --------->ZAT18   ==============================HOX2a_HOX2a -->HVH21--------->RAP2.3(1) <---------ATERF1(1)--------->ATERF1(1)<---------ARR14(2) >DREB2C(2)--------->ANAC58<---------ABI4(2)<---------ATERF1(1)    --------->ARR14(3) >RAP2.3(3)<---------ATERF1(1)--------->ORA47(2)<------NtERF2      --------->ARR14(2) >RAP2.3(2)------>NtERF2  <---------ATERF1(1)===============================HOX2a_HOX2a >DEAR3(1)--------->ATERF1(2)------>NtERF2 --------->ALFIN1        <---------ARR11(3)           <---- xxxxxx>smallRNA(i)    xxxxxxxxxxxxxxxx>smallRNA(i)<------NtERF2 ----------->ARR10  <------ZmHOX2a(1) ------ZmHOX2a(1)    <------ZmHOX2a(1)<------ZmHOX2a(1)----------->HVH21          <---------TOE2(3) >   aaggagactgcgccggcaacgaaggagactgcgccgacgaggacggaggagccgtcgctgacagagcaagatccggagaatgttgaggaagaagagagtg  5568000                                                                           ------------------------>ANAC81                                                                          <------ZmHOX2a(1)                                                                    <------ZmHOX2a(1) ---------->DOF2        ---------->DOF2---------->DOF2<------ZmHOX2a(1)    <------ZmHOX2a(1) <------ZmHOX2a(1)    <-- -----ZAT14 ------------------------>ANAC81          <------ZmHOX2a(1)  ------------------------>ANAC81 >>>>>>>>TBF1  >>>>>>>>>TBF1  >>>>>>>>>TBF1 <------ZmHOX2a(1)    <------ZmHOX2a(1) <------ZmHOX2a(1)   aagaagaagagaaagaagaagaagagaaagaagaagaagaggaagaggaaggggaggaagaggaagaggaggaagaggaggaagaggagaaagaagaaga  5568100                                                                      <---------ARR14(2)                                                                      --------->GLK1(2)                                                                      --------->ARR14(2)                                                               <XXXXXXXXXXXXXXXXXXXXMIR774B*   <xxxxx                                                              --------->DEAR3(1)               <-----                                              --------->HSFB2a(2)  XXXXXXXXXXXXXXXXXXXX>MIR854A-E           <------NtERF2                  <---------ANAC58  <---------At4g35610              <-------          --------->LBD16           <---------HSFB2a(2)  <---------ATERF1(1)                 --------         <---------ANAC46           --------->HSFB2a(2) --------->AtMYB61                    --------        <---------LBD16     --------->YAB1<---------ANAC58  --------->LBD16                 ------->GAMYB        <------NtERF2      <---------YAB1--------->HSFC1(2) ------>NtERF2                  <xxxxxxxxx   <-----------RAV1(1)   <---------At4g35610  <---------HSFB2a(2) --------->YAB1          --------->At4g35610 ----ZmHOX2a(1)       ------>ZmHOX2a(1)  <---------HSFC1(2)--------->DEAR3(1)    <------ZmHOX2a(1)   ggagaatgttggcggagaagagtcctccgatgatagtactagaagcttggggaagagacctccgccgatgagaatatggatgaggagacatcaactgcag  5568200  Previous    Next  AGI:  At4g08700.1    Description:  ATPUP13 (Arabidopsis thaliana purine permease 13); purine transmembrane transporter. Identical to Probable purine permease 13 (PUP13) [Arabidopsis Thaliana] (GB:Q8RY83;GB:Q9LDT1); similar to ATPUP12 (Arabidopsis thaliana purine permease 12), purine transmembrane transporter [Arabidopsis thaliana] (TAIR:AT5G41160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70463.1); contains InterPro domain Protein of unknown function DUF250 (InterPro:IPR004853) Range:  from: 5565850    to: 5567455    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g08710.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23480.1); similar to PREDICTED: hypothetical protein [Rattus norve (GB:XP_001078517.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048) Range:  from: 5567739    to: 5570569    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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