Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               <---------ANAC58                                             <----------DOF2 <---------ANAC58        ----------->GT1             --------->ZAT6                 <---------------AGL15           <---------MYB52(1)     <---------ANAC46                       --------------->AGL15          <-----------HVH21   <---------ANAC46<---------ARR11(3)      ----------------->AGL1 <<<<<<<<<TBF1    ---------->DOF2  - --TEIL   <------ZmHOX2a(1)       --------->REM1(1) --------->At5g28300 <---------At4g35610        --   atgagttgtgtaggaacactagttcttcttgttccttcatcttcttcctttagcagtaacattgcttcttcttcatctgttacccaaaagaaaaaaacac  5567100                                   --------->YAB1                              --------->AHL20(2)                              <---------AHL20(2)                            <---------YAB1                            --------->ICU4                         <---------YAB1                                               --------->ARR14(2)                        <-----------GT1                                 <---------LBD16   --------->LBD16                       <-----------GT1                                  --------->LBD16 --------->TOE1(2)                      --------->AHL20(2)                        --------->YAB1        <---------ARR14(2)           <----------DOF2--------->YAB1       --------->AHL20(2)--------->AHL20(2)   --------->GLK1(2) -------->DAG2        <---------AHL20(2)       <---------AHL20(2)<---------AHL20(2)   --------->ARR11(3) -------->DOF2  <---------TOE2(3) <---------YAB1          <-----------GT1       <---------TOE2(3)   ataaagttttcatcttttaagaaatttatcatttttatgaaaaccccaattttttgtttttgacaattttaatctggggattaagaaaaatctgggaatt  5567200                                                                                                    <                                                                                                  <--                                                                                                 ----                                                                      <---------ARR11(3)      <------                              --------->HSFB2a(2)                     --------->ARR11(3)   --------->ARR14(2)                       <---------AHL20(2)                       ---------->DOF2            <---------ARR11(3)                      <-----------GT1                        --------->TOE2(3)             --------->ARR11(3)           --------->WOX13(1) --------->HSFC1(1)         <------ZmHOX2a(1)                 <---------ARR14(2)          <---------AHL20(2)  <---------HSFC1(1)       --------->ANAC58  <-----------GT1  <---------HSFB2a(1)          --------->AHL20(2)  <---------HSFB2a(2)      --------->ANAC58--------->CCA1(2) ----------->ARR10   gggttttgacaattaatcagtttatttcatttctagaatcgaaactgaaattgaagtaaggaacattaaagagatatacccattgtgaaggaagatttgt  5567300                                                          --------->LBD16                                               <---------ARR14(2)                                               <---------ARR11(1)                                               --------->ARR14(2)         --------->YAB1                                               ------->TEIL <---------ANAC46                                               <-----------ARR10          <---------ICU4                                              <---------CCA1(2)          <---------ATHB12                                              <---------ARR14(1)        ------>MYB46(1)        <-----           ------->TEIL            --------->CCA1(2)      ------>NtERF2 ------>MYB83           <-----    <---------WOX13(1)            <----------ARF1 <----------DOF2     --------->AtMYB61        <----- ---------WOX13(1)         <------ZmHOX2a(1)--------->ANAC55(2)  --------->SPL7          <----------DOF2 -------WRKY18(1)       <-----------RAV1(2) <---------ANAC55(2) <------ZmHOX2a(1)<---------CCA1(2) ----->WRKY38(1)    --------->At4g35610--------->ANAC58  <---------DEAR3(1)    --------->YAB1  <----- ---MYB46(3)        <---------At4g35610--------->ANAC58 <---------LBD16--------->WOX13(1)<---------DAG2   tgactgatggatgaatcgagtctgcttcaggattgagagacaagtctcgtatcttttctccggcgaggacgaccaatcatctcataactccctttttgct  5567400                                                                                              -------                                                                                              <------                                                                                  <---------ARR11(3)                                                                                  --------->ARR14(2)                   ----------->RAV1(1)                                            <---------ARR14(2)            --------->ARR11(3)                                                    --------->ARR11(3)            <---------ARR11(3)                                                   --------->GLK1(1)            <---------ARR14(2)                           <---------ANAC55(2)     --------->RVE1(1)     --------->GLK1(2)                                  <-------TEIL             <---------GLK1(1)     --------->ARR11(3)                                *TSS                     <---------ARR11(3)     <---------ARR11(3)   --------->MYB52(1)       --------->AHL20(2)           --------->ARR14(2) ----ANAC58 --------->ARR14(2)                     <---------AHL20(2)           --------->ARR11(3) ----ANAC46 <---------ARR11(1)                --------->AHL20(2)         <-----------GT1    --------- ----ANAC58 <-----------ARR10                 <---------AHL20(2)    <------ZmHOX2a(1)       <-------- ----AtLEC2<---------CCA1(2)                 --------->AHL20(2)   <---------TOE2(3)   ------>ZmHOX2a(1)   tgaagaaaatctcatatcttcccacaaaaaacagaacctatttgtgatttaatttaaatacataaatgaaggattttaccaagatatcctctcactttaa  5567500                                                         ------>ZmHOX2a(1)    >>>>>>>>>MYB2                                <---------MYB52(1)      <---------GLK1(1) -->AHL20(2)                                  ---------->ID1   ---------->DOF2      --------->ARR14(2) ---AHL20(2)                                 <-----------GT1--------->ANAC58        <---------ARR14(2) ------>AGL15                             --------->AHL20(2)--------->ANAC58  --------->LBD16 --DOF2          --------->AHL20(2)  ------------>CBF<-----------GT1--------->CCA1(2)   tttgaaaaccaaaaaaaaaaaaaattcagactcaacacttacaattttttcgttttttcctcactcaaagaaacgagttccgagagaaaccgctctctct  5567600                     --------->ANAC58                         ------->TEIL                     --------->ANAC58         <---------GLK1(2) --------->TOE2(3)                     --------->ANAC46    --------->ANAC46  --------->ANAC46               --------->GLK1(2)              <---------ZAT18        <-----------HVH21     --------->ANAC58              <---------GLK1(2)              --------->ZAT14       <----------DOF2        --------->ANAC58           --------->YAB1     <---------GLK1(2)        ------>ZmHOX2a(1)       --------->MYB46(3)      <----------DOF2  xxxxxx   ctctctcgattctctgtgaacacaaacaactcctctccctttcactcaaattctcaacaacacgaaccctaattctctctcttttctctcagaatcgttt  5567700                           --------->DEAR3(1)                          <------NtERF2                          --------->RAP2.3(1)                         --------->LBD16                                                ------->GAMYB                         ------>NtERF2   <------NtERF2                                 ----------->HVH21                        --------->DEAR3(1)                                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        <---------ATERF1(2)                                  --------->At5g28300                       <---------RAP2.6(2)                                  ----------->GT1                   ---------->DOF2      <xxxxxxxxxxxxxxxxsmallRNA(i)        --------------------->WRI1                --------->TOE1(3)      *TSS                             <---------MYB52(2)                --------->TOE2(3)      --------->RAP2.6(2)              --------->MYB46(3)               --------->ZAT6          <---------ATERF1(2)      --------->ALFIN1       --------->MYB46(3)            ------>ZmHOX2a(1)          --------->DEAR3(1)      <------ZmHOX2a(1)     --------->MYB52(1)          --------->YAB1--------->ATERF1(2)   ---------->DOF2 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    ------>ZmHOX2a(1)<-----------RAV1(1)------>NtERF2     xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <----- xxxxxxxxxxxxxxxx>smallRNA(i2)  ------------>CBF       <------ZmHOX2a(1)----------->HVH21<---------LBD16   cttctcctctaatcctaaccctaatgccgccgaaaacaatgccgcctctaaagaagaggaagagaggagttggaacgaccgtgaaatcaacgacggagga  5567800                                                     <xxxxxxxxxxxxxxxxsmallRNA(s)                                                     <---------MYB52(2)                                                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                <---------MYB52(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                <xxxxxxxxxxxxxxxxsmallRNA(s)                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            <------NtERF2          <xxxxxxxxxxxxxxxxsmallRNA(i)                            --------->ATERF1(1)  <------NtERF2                           --------->LBD16      --------->LBD16                           --------->ANAC58     ------>NtERF2                           <---------ATERF1(1)  --------->ANAC58                           ------>NtERF2        --------->ANAC58                           --------->ANAC58     <---------ATERF1(1)                          --------->RAP2.3(2)  --------->RRTF1(2)                          <---------ATERF1(2)  <---------DEAR3(1)                          --------->ATERF1(2)  --------->DREB2C(2)         --------->MYB52(1)                          <---------DEAR3(1)   --------->RAP2.3(2)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                          --------->RAP2.3(3)  --------->RAP2.3(3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          --------->RRTF1(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          --------->DREB2C(2)  --------->DEAR3(1)        --------->DOF5.7(2)     xxxx                          --------->RRTF1(3)   --------->ATERF1(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      ------>NtERF2           ------>NtERF2                          --------->DEAR3(1)   <---------ATERF1(2)  --------->At1g77200     ---------                         <---------LBD16       --------->RRTF1(3)   --------->RAP2.3(2)     ---------                         <------NtERF2        --------->ATERF1(1)   ----------->HVH21       ---------                         --------->ERF1       <------NtERF2         --------->DEAR3(1)      ---------                         --------->ATERF1(1)  --------->ORA47(2)    --------->RAP2.3(3)     ---------                         --------->RAP2.3(1)  --------->ERF1       --------->ORA47(2)       ---------                         --------->ORA47(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxx                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->ERF1          --------->DEAR3(2)                        ------>NtERF2         <---------LBD16      --------->DEAR3(2)      <------NtERF2                        <---------RAP2.3(1)   --------->RAP2.3(1)  --------->ATERF1(1)     --------->ATERF1(1)                        <---------RRTF1(1)   <---------RRTF1(1)    <------NtERF2           --------->ERF1                <------ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<------NtERF2        --------->ORA47(2)           <xxxxxxxxxxxxxxxxsmallRNA(s)      ------>NtERF2         --------->RAP2.3(1)     --------->RAP2.3(1)           <---------MYB52(2) <xxxxxxxxxxxxxxxxsmallRNA(i)        ------>NtERF2           <---------RAP2.3(1)          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------RAP2.3(1)  <---------ATERF1(1)     ------>NtERF2         <xxxxxxxxxxxxxxxxsmallRNA(i)        <---------ATERF1(1)  <---------RAP2.3(1)     <---------ATERF1(1)       <------NtERF2  --------->ZAT18       <---------DEAR3(1)  <---------ABI4(2)       --------->ZAT18      ------>NtERF2   <---------ZAT14<------ZmHOX2a(1)          --------->ZAT18         <---------ZAT14     <---------DEAR3(1)<---------DEAR3(1)  <---------ZAT14      <---------ZAT14     xxxxxxxxxxxxxxxx>smallRNA(i)     --------->ATERF1(2)<---------ATERF1(1)<---------ABI4(2)xxxxxxxxxxxxxxxx>smallRNA(i)<---------ABI4(2)   <---------ATERF1(1)<---------ABI4(2)    --------->ZAT18<------ZmHOX2a(1)<---------DOF5.7(2)<------NtERF2  ----------->HVH21  <---------ATERF1(1)  <---------ATERF1(1)  <---------ATERF1(1)<------ZmHOX2a(1) < -ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ATERF1(1)--------->DREB2C(2)<---------ATERF1(1)   gactgcgacggcaacgaaggagactgcgccggcaacgaaggagactgcgccggcaacgaaggagactgcgccgacgataacgaaggagactgcgccgacg  5567900                <---------MYB52(2)                <xxxxxxxxxxxxxxxxsmallRNA(s)               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              <xxxxxxxxxxxxxxxxsmallRNA(i)            --------->ATERF1(1)            <------NtERF2           ------>NtERF2          --------->ATERF1(2)          --------->RAP2.3(2)          --------->DEAR3(1)          --------->RAP2.3(3)          <---------ATERF1(2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          --------->RRTF1(2)          <---------DEAR3(1)          <------ZmHOX2a(1) <-----------HVH21          --------->DREB2C(2)    <------NtERF2 <---------ATERF1(1)         --------->ATERF1(1)     xxxxxxxxxxxxxxxx>smallRNA(s)        ======================HOX2a_HOX2a         --------->ERF1         ------>NtERF2  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         --------->RAP2.3(1)   --------->RAP2.3(3)      ------>NtERF2<---------LBD16         --------->ORA47(2)    --------->RAP2.3(2)     ----------->HVH21         <------NtERF2         ----------->HVH21     <---------At4g35610         <---------LBD16       --------->DEAR3(1)    --------->At4g35610        <---------RAP2.3(1)    --------->DREB2C(2)  <---------DEAR3(1) --------->LBD16        <---------ATERF1(1)    --------->At1g77200<-----------HVH21  ------>ZmHOX2a(2)        ------>NtERF2         <------NtERF2   --------->ARR14(2)    --------->ARR14(1)        <---------RRTF1(1)    --------->ATERF1(1)--------->RAP2.3(2)--------->CCA1(2)       <---------DEAR3(1)     --------->RAP2.3(1)--------->DEAR3(1) =======================HOX2a_HOX2a      <---------ZAT14         --------->ORA47(2)--------->DEAR3(2)  <------ZmHOX2a(2)      <---------ABI4(2)       --------->DEAR3(2)<------NtERF2      --------->AGP1   <------ZmHOX2a(1)      --------->ZAT18        <---------RAP2.3(1)--------->ATERF1(1)--------->ARR11(3)     <---------ATERF1(1)     ------>NtERF2   <------ZmHOX2a(1)     --------->ARR14(3) xxxxxxxxxxxx>smallRNA(s)  <---------ABI4(2) ===============================HOX2a_HOX2a -->HVH21xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------ARR14(2)   --------->ARR11(1) >DEAR3(1)--------->RRTF1(3) <---------ATERF1(1)--------->RAP2.3(1)<---------ARR14(3) >At1g77200--------->ANAC58<---------ZAT14   --------->ATERF1(1)   <---------ARR11(3) >RAP2.3(2)--------->ANAC58--------->ZAT18 --------->ALFIN1        <---------ARR14(2) >DREB2C(2)<---------ATERF1(1)--------->ERF1<---------ATERF1(1)    --------->ARR14(2) >RAP2.3(3)--------->LBD16<---------ATERF1(1)==============================HOX2a_HOX2a xxxxxx>smallRNA(i)    xxxxxxxxxxxxxxxx>smallRNA(i)<------NtERF2 ----------->ARR10<---------TOE2(3) > ------ZmHOX2a(1)    <------ZmHOX2a(1)=====================================HOX2a_HOX2a          <----   aaggagactgcgccggcaacgaaggagactgcgccgacgaggacggaggagccgtcgctgacagagcaagatccggagaatgttgaggaagaagagagtg  5568000  Previous    Next  AGI:  At4g08700.1    Description:  ATPUP13 (Arabidopsis thaliana purine permease 13); purine transmembrane transporter. Identical to Probable purine permease 13 (PUP13) [Arabidopsis Thaliana] (GB:Q8RY83;GB:Q9LDT1); similar to ATPUP12 (Arabidopsis thaliana purine permease 12), purine transmembrane transporter [Arabidopsis thaliana] (TAIR:AT5G41160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70463.1); contains InterPro domain Protein of unknown function DUF250 (InterPro:IPR004853) Range:  from: 5565850    to: 5567455    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g08710.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23480.1); similar to PREDICTED: hypothetical protein [Rattus norve (GB:XP_001078517.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048) Range:  from: 5567739    to: 5570569    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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