Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      <xxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                <---------At4g35610                                                                                --------->At4g35610                                                                                --------->LBD16                                                                              <---------LBD16                                                                            <-----------GT1                                                                         <---------AHL20(1)                                                                         --------->AHL20(1)                                                                         <---------ARR11(3)                                                                       <---------AHL20(1)             <---------AHL20(1)                                        --------->ARR11(3)             <---------AHL20(2)                                        <---------ARR11(3) --------->GT1                                                      --------->AHL20(2) ------->YAB1--------->AHL20(2)<---------DAG2          ------>ZmHOX2a(1) --------->ARR11(3)   ------- -------->AG --------->AHL20(1)<----------DOF2        --------->TOE2(3)--------->AHL20(1)    <------- -------->AGL1   <-----------GT1              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxx   atcgtaaaattgcattttattaccaaaaaaacacttttctatgaagtgaagtttttcctcaaaatcacaaaaaaatattttccgctaaaattgaaatcat  5558300                                                                                      <xxxxxxxxxxxxxx                                                                                      --------->AtMYB61                                                                                     <xxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                             --------->HSFB2a(1)                                                                             <----------TaMYB80                                                                            <---------ARR11(1)                                                                            <-----------ARR10              <xxxxxxxxxxxxxxxxsmallRNA(i)                                --------->LBD16     --------->LBD16                                                     --------->ANAC46           <    --------->LBD16                                                      --------->ANAC58        <---    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                --------->ANAC58       -----    --------->ANAC46                --------->MYB52(1)       <xxxxxxxxxxxxxxxxxsmallRNA(fl3)    <----   <---------LBD16             --------->ANAC46  --------->ANAC55(2)    <---------LBD16      --------  <<<<<<<<<<E2Fa    --------->TOE1(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ANAC46<-  <<<<<<<<<<E2Fe    --------->DEAR3(1)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxx  <<<<<<<<<<E2Fc    --------->TOE2(2)  --------->TOE1(3)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)----  <<<<<<<<<<E2Fd   --------->MYB46(3)  ----------->GT1   --------->At4g35610------->TEIL    --------- xxxxxxxsmallRNA(fl3)          --------->ANAC58  <---------ANAC55(2)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxsmallRNA(fl3)--------->DEAR3(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------CCA1(2)--------- -->YAB1    xxxxxxxxxxxxxxxx>smallRNA(i)--------->At5g28300  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)xxxxx --ATHB12  <xxxxxxxxxxxxxxxxsmallRNA(i)--------->TOE2(3) <---------At4g35610--------->ARR14(2)  xxxxx xxxxxxxxsmallRNA(fl3)         --------->ANAC58<-----------GT1   ----------->GT1  <xxxxxxxxxxxxxxxxxx   gttttcccgctaaaactgtaaaccgacgatttctcgccaaaccgtaaaatcacgttttctgctaaaatagtaaacccgcatcttcccaccaaaatcgtaa  5558400     <---------ARR14(2)     --------->ARR14(2)     --------->KAN4(2)    <---------KAN4(1)    <----------TaMYB80   ---------->TaMYB80 --------->LBD16 xxxxxxxxxsmallRNA(i2) xxxxxxxxsmallRNA(i2) xxxxxxxsmallRNA(le3) xxxxxxxsmallRNA(s2) xxxxxsmallRNA(si3) xxxxxsmallRNA(le3) xxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxsmallRNA(i) ------ARR14(2) ---->GLK1(1) -----GLK1(1) ->TOE2(3)<---------At4g35610 --------LBD16                      ----------------->AGL1 xsmallRNA(s2)                      ----------------->AGL2 ----->ARR14(2)                     <-----------------AG                     --------->KAN4(2)     -- -->GT1   --------->At4g35610     --------->ANAC46   <---------ANAC46       <---------ICU4         -- >YAB1    --------->LBD16         --------->ANAC58   <---------ANAC58   <---------AHL20(2)       <--- xxxxxxxxxxxxxxxx>smallRNA(se3)   --------->ANAC58   <---------ANAC58   --------->AHL20(2)---------->DOF2 xxxxxxxxxxxx>smallRNA(se3) <----------DOF2----------->GT1            --------->YAB1 --------->AHL20(2) xxxxxsmallRNA(i2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <-----------GT1      xxxxxxxxxxxxxxxxx   atccgcatattccgctaaaatcgcaaaaccctttttaagccaatatcggaaaattgcgttttatattaccaaaaataaatattcccataaaataaagttt  5558500                                     --------->WRKY38(1)                                     --------->WRKY12                                     <---------ZAT14                                     --------->ZAT14                                    --------->DOF5.7(2)   <xxxxxxxxxxxxxxxxsmallRNA(i)      <--------                                    <---------MYB52(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       ---------                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            >>>>>>>>>E2Fc                           <xxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxsmallRNA(i)  --------->AHL20(2)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          --------->LBD16               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               --------->DAG2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            --------->LBD16   <--           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       --------->RAP2.6(2)      ------>NtERF2     ---       <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->ANAC58   <--      --------->ANAC46    ------>NtERF2              <---------At4g35610       --------->DEAR3(1) <xx <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<-----------HVH21--------->At4g35610       --------->ANAC46   <-- --------->LBD16         --------->ANAC46   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)>>>>>>>>>E2Fd    <-- ------->HSFB2a(2)  xxxxxxxxxxxxxxxx>smallRNA(i)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->TOE2(3) ------------->AtSPL3   <---------LBD16    <xxxxxxxxxxxxxxxxsmallRNA(i)        --------->ANAC58   <-- --------GT1  ---------->DOF2 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------TOE2(3) --------->TOE1(3) xxxxxx>smallRNA(se3) --------->ARR14(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <---------LBD16   <----   tcccgtacaaatcacaaaaagtggtttccgccaaaaccgttcaccgatgttttccagccgaaactataaactgatgtttccccgccaaaaccataaaatt  5558600                ----------->GT1            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                             xxxxxxxxxxx        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                            <xxxxxxxxxxxx      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                             xxxxxxxxxxxxxx    <-----------GT1                                                               <-----------GT1 -AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                              --------->LBD16 >AHL20(2)--------->AtMYB61       <---------At4g35610                       <---------ANAC55(2) -------ANAC55(1)       ----------->RAV1(1)<xxxxxxxxxxxxxxxxsmallRNA(s)     --------->ANAC55(2) ------>ANAC55(2)       XXXXXXXXXXXXXXXXXXXX>MIR774B*                  ---------->DOF2--------->ANAC58 -------ANAC55(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)               --------->TOE2(3) --------->ANAC58 xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       ----------->GT1           --------->TOE1(3) --------->ANAC46 -------ANAC58  --------->YAB1    --------->At4g35610              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -------ANAC58<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <---------At4g35610--------->ARR14(2) -------ANAC46<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         --------->At4g35610<---------ARR14(2) -------GT1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)   acgttttttccaccaaaatcgtaaacccacattttctgctcaaatcgaaaaaccgtgttttcagcaaaaaccttaaacccgtattttctcgccaaaattg  5558700                                                            <---------AHL20(1)                                                            <---------AHL20(2)                                                            --------->AHL20(1)                                                            --------->AHL20(2)                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                           --------->YAB1                                                           <---------AHL20(2)                                                           --------->AHL20(2)                                                        <---------ICU4                                                        --------->YAB1                                                       <---------AHL20(2)                                                       --------->AHL20(2)                                                      <---------YAB1                                                    --------->YAB1                                                    -------->ATHB1                                                    -------->HAHB4                                                    <---------AHL20(2)                                                    <---------ICU4                                 xx                --------->AHL20(1)                  --------->ATHB51                             ----                <---------ARR11(3)                  <--------HAHB4                               <---                --------->ARR11(3)                 --------->ICU4                           <--------              --------->AHL20(1)                   <---------ATHB51                        <---------AHL20(2)              <---------AHL20(1)                 --------->YAB1                         --------->AHL20(1)             --------->AHL20(2)                  <---------ICU4                         --------->AHL20(2)           --------->AHL20(2)                   --------->AHL20(2)                      <---------AHL20(2)         --------->AHL20(2)                     <---------ATHB51                    <---------AHL20(1)  *TSS <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------AHL20(2)                      --------->AHL20(1) <---------ANAC58                  ----------->GT1 <---------YAB1                   --------->AHL20(2) <---------ANAC58    <-----------GT1        --------->AHL20(2)    <---------YAB1    <---------AHL20(2) xxxxxxxxxx>smallRNA(se3)      --------->DAG2   --------->ICU4 <---------AHL20(2)  --------->AHL20(2) xxxxxxxxxxxsmallRNA(se3)     ---------->DOF2   <---------AHL20(2)----------->GT1  <---------AHL20(2) xxxxxxxxx>smallRNA(fl3)   ----------->TBP <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<--   tattcttgccaaaaaatatatattcacccataaaaagctgtatattttaaataattattaattatattatgttatatgggtctaaataaattttttaatg  5558800          <---------AHL20(2)                                                                        x         <---------YAB1                                                                     <xxxxxxxx         --------->ICU4                                                                     <--------      <---------AHL20(2)                                                               <------MYB46(1)      <---------YAB1 <---------AHL20(2)                                                <------MYB83 x      --------->AHL20(2)                                                              <---------MYB46(3)     --------->AHL20(2)                                                              <--------P    <-     --------->AHL20(1)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------ANAC58xx     <---------AHL20(1)                  <---------ANAC46                          <---------ANAC58<-    --------->YAB1   --------->AHL20(2)  ----------->GT1   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   xxx xxxxxxxxxxxxxxxxxxx>smallRNA(se3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <---------ANAC46<- ------->GT1      ------->TEIL  <------ZmHOX2a(1)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxx -------ID1    <---------ANAC55(2)      <---------TOE2(3) ----------->GT1   xxxxxxxxxxxxxxxxx>smallRNA(si3) -AHL20(2)--------->AHL20(2)   ----------->GT1   --------->TOE2(3)    <---------ZAT14--------->ALFIN1 ---------HVH21--------->ANAC55(2)  --------->CCA1(2)    <---------TOE2(3)<---------ZAT6    <xxxxxxxx   ggtcaaatataattaatatgtatttaaatagggaggagaaatgaggtataaacttaaatgaggttaaatgagtttagagtaaatggggtgggttttaaat  5558900              --------->YAB1            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     <--------P     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <-------GAMYB   <------MYB46(1)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <------MYB83  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------MYB46(3) --------->ALFIN1 xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <--------Pxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                               --------->YAB1 xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                            <---------YAB1 xxxxxxxxxxxxxxxsmallRNA(se3)                             <---------AHL20(2) -AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          <---------AHL20(2)                         - xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                     --------->AHL20(2)                         < --------ANAC58             ----------->GT1              <---------AHL20(1)                        <x xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     --------->AHL20(1)                        <x --------ANAC46    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->ARR11(3)  --------->YAB1       --- xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <---------YAB1 <---------ARR11(3) <---------YAB1        xxx --------ANAC58  <-----------GT1          <---------AHL20(2)<---------AHL20(2) <--------P<xxxxxxxxxxx xxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------AHL20(2)<xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxsmallRNA(fl3)    --------->ICU4         --------->AHL20(2)  <---------TOE2(3)<-------   ggggtgggttagcctatattaacatcacaactgtaacaattgatataattgcagataaatatatttttattcataactatggtagttttcttccttcgtg  5559000                                                                                                xxxxx                          --------->ANAC58                                                     xxxxxx                      <xxxxxxxxxxxxxxxxsmallRNA(i)                                            -------                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                                -------                  --------->LBD16                                                            <xxxxxxx                <---------LBD16                                                              <xxxxxxx              --------->ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      ------>MYB46(1)              <---------ARR14(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       xxxxxxxxx      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                  <xxxxxxxx   xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                       ------>MYB83  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                             <----------DOF2          -------->P -------->KAN4(2) <---------HSFB2a(2)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                             <---------ANAC58         <xxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                <xxxxxxxxx xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        xxxxxxxxxxxxxxxxxxxxx ---->TEIL   ------>MYB83 --------->ANAC58<---------MYB52(1) <---------ICU4    xxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------ALFIN1 xxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(i)   <---------ICU4         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xsmallRNA(se3) <xxxxxxxxxxxxxxxxsmallRNA(i)<---------ARR11(3) <---------WOX13(1)    <xxxxxxxxxxxxxxx --ANAC46    ------>MYB46(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------ANAC58<xxxxxxxxxxxxxxxxxx   tatgttcccaaaaccaaatccgcgaagaacgaaaccaattctccattatctcttcttcattactaattgcttttcatttactcacattcttccctacctc  5559100                                                                                                    -                                                <----------DOF2                                  <---                                          <---------ANAC55(2)                                    <---                                          --------->ANAC55(2)                                    <xxx                                         <---------------------WRI1                              xxxx                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                              -------                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                               <xxxxxxx                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               <xxxxxxx                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              xxxxxxxxx                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              xxxxxxxxx                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              --------->YAB1                    --------->LBD16      <---------LBD16                                  <xxxxxxxxxx        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          <xxxxxxxxxx    <---------GLK1(2)   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                           <xxxxxxxxxxx xxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           xxxxxxxxxxxxx xxxxxxxxxxxxxxxxx>smallRNA(si3)        --------->MYB52(1)                              <xxxxxxxxxxxx -->TOE2(3)       <---------LBD16     <xxxxxxxxxxxxxxxxsmallRNA(i)                      <xxxxxxxxxxxx -->TOE1(3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                 <xxxxxxxxxxxxx xxxxxxxxxxxxxxxxsmallRNA(i2)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                 xxxxxxxxxxxxxx xxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                           <xxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxx>smallRNA(se3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)            <------ZmHOX2a(1)<xx xxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)               <xxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxsmallRNA(si3)--------->HSFB2a(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxx xxxxxxxxxxxxsmallRNA(se3)<---------HSFB2a(1)<xxxxxxxxxxxxxxxxsmallRNA(i)      --------->MYB59------- xx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxx x>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ---------->DOF2    <xxxxxxxxxxxxxxxxsmallRNA(i)xx xxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        --------->GLK1(2)<xxxxxxxxxxxxxxx xxxxxsmallRNA(fl3) <---------LBD16   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   aactcagtttctcaagtatttctggggaagattgccttcaaattacggagctttcaaagaaaatgtcaagaatttgaagattaggaaaacaatcgcaagg  5559200  Previous    Next  AGI:  At4g08692.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 5558039    to: 5558702    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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