Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  <----------DOF2       <---------ALFIN1                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    --------->ANAC46                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   --------->SPL7                                           <-------PIF5 ----->LBD16                <----------DOF2                 ------->PIF5 -->NtERF2                  <---------DAG2                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---->ANAC46       --------->ARR11(3)           ----------->RAV1(1)   <-----------HVH21 ----LBD16         <---------ARR11(3)          <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <----------DOF2   gcccataccacacttgaatgaaatcttctccttttcccatctatcttgaacaacattatgcccgtgctttaatgtcacctctaaaatagcttctttgaac  5544500                                                                                    ------>ZmHOX2a(1)                          --------->YAB1                                          ------>ZmHOX2a(2)                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     <---------ARR11(3)                       --------->WOX13(1)                                       <---------ARR14(2)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       --------->ARR14(2)                 ------->TEIL                                                   --------->ARR11(3)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                   ----------------->AGL3      ---             <---------------AtSPL3                                   <-----------------AGL3 <-------             <---------------AtSPL8                              --------->ANAC46<------ZmHOX2a(2)<--             --------------->AtSPL8                   <---------GLK1(2)        <------ZmHOX2a(1)  ---        --------->REM1(2)<---------ATHB12           <---------YAB1    <-----------------AGL1 --------  <xxxxxxxxxxxxxxxxsmallRNA(i)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------   tcaatccctgtgaagaatgtacttccaatcacaaacttatcacccatagcccttctgattcttctatccctcaccaaaataggatcctcgtcttcatctg  5544600                                                                                          ===========                                                                                          ------>ZmHOX2a(2)                                                                                         <------ZmHOX2a(2)          --------->AHL20(2)                                                             ============          --------->YAB1                                                                --------->ARR14(2)    --------->HSFB2a(2)      --------->ARR14(2)                                         <---------ARR14(2)   <---------LBD16     --------->ARR14(2)                                               <-----------ARR10  <---------LBD16      <---------ARR14(2)                                               --------->ARR14(3) ------>At4g35610      --------->MYB52(1)                                               --------->GLK1(2) --At4g35610 <---------ARR11(3)                                                         <---------ARR14(3) -------At4g35610  ------>NtERF2                                                        <---------ARR11(3) ------>ZAT2 --------->ARR11(3)         <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              --------->ARR11(3) ->At4g35610<---------CCA1(2)<---------ARR14(2)                        xxxxxxxxxxxxxxxx>smallRNA(i) --->RAV1(2)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    ---------->DOF2     <------ZmHOX2a(1)   agctctcgggaattatatctcggcctatcggtatctcgtcttcaaaatttgctactccatcatctacttcaaagtcaaaacgctcaagaggatcttcttc  5544700               <----------DOF2                                                                     --        <<<<<<<<<TBF1                                                                       xxxxxxxxx ------>ZmHOX2a(1)                                                                       <xxxxxxxxxxx <----------DOF2          <<<<<<<<<TBF1                                  <---------ZAT14--------->DOF5.7(2) =======HOX2a_HOX2a   <---------YAB1                      <<<<<<<<<TBF1  --------->ZAT14<---------MYB52(1) =======HOX2a_HOX2a<---------YAB1                     <---------ARR11(3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   atcctttttcttcttctctttcttattcttcttcgtattcttcttacttctaacaatttcttcttcaatccgctcttcactctctgattcgttaccccca  5544800                   --------------->AGL15               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)              <-----------TGA1             --------->ANAC46             --------->DEAR3(1)       --------->bZIP60(1)    --------->ANAC46 <---------YAB1                          <---------ICU4  <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        *TSS ------->ZAT14<-----------HVH21                       --------->ARR11(3)                           -- xxxxxxxxxxxxxx>smallRNA(i2)                   <-----------HVH21                               <----- xxxxxxxxxxxxsmallRNA(si3)                     --------->TOE2(3)--------->ZAT6          xxxxxxxxxxxxx   ttgtactcgacatcaccgtcactatatttgtaaaacatatcaacatcatcgtcaaacatctacttatcactctcaaatatcaactaatccaaacaaatac  5544900                                                                                  --------->ANAC55(2)                                                                                  <---------ANAC58                                                                                  <---------ANAC58                                                                                  <---------ANAC55(2)                                                                                  <---------ANAC55(1)                                                                                <-----------GT1                                                                         -------->P                     <---------AHL20(2)    --------->ANAC46    <---------YAB1------>MYB46(1)                     --------->AHL20(2)  <-----------GT1     --------->YAB1<---------MYB59                    --------->AHL20(2)------>MYB83           <---------ICU4------->GAMYB   --------->ARR14(1)                 <---------AHL20(2)   ------>MYB46(1)       --------->ICU4--------->MYB46(3)<-------TEIL            ----------->GT1         <---------MYB59         <---------ATHB51 ------>MYB83 <---------GLK1(2) ---------->CBF --------->AHL20(2)  ------->GAMYB <----------DOF2        ------>MYB46(1)  <---------ARR14(2) --TEIL--------->LBD16            -------->P   <---------ARR11(3)        ------>MYB83     --------->ARR14(2) xxxxxxxxxx>smallRNA(se3)        --------->WOX13(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <----   atacaattccgaacaagataaaattaatacaaaatcaaccaaattacgacatctttgtggaaattatgagactccaaccaaattacgtttcagattcgat  5545000                      --------->ANAC46                    --------->AtMYB61                    <---------ALFIN1                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                   --------->ANAC46                 --------->DEAR3(1)                 --------->AtMYB61                 <---------ALFIN1     --------->AtMYB61                --------->MYB46(3)  ----------->RAV1(1)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            --------->ANAC58       --------->DEAR3(1)            --------->ANAC58       <---------ALFIN1            --------->ANAC46       --------->AtMYB61       >>>>>>>>>TBF1       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                ------------------------>ANAC81       --------->GLK1(2)--------->ANAC46          --------->YAB1  ---------->DOF2        --------->HSFB2a(2) --ZmHOX2a(2)--------->MYB46(3)   --------->MYB46(3) --------->YAB1                      <---------HSFB2a(2)   caaaccaagattccaagcaccaccacacgacgaagcaccaccacaagacgaagaataagaagaagaatcaaagaaaatcgaatttgatgttcgagtaata  5545100                                                                  ----------------->AGL3                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                   <---------KAN4(2)                                                   ---------->TaMYB80                                                   --------->ARR14(2)                                                   <---------ARR14(2)                ---------->DOF2                   xxxxxxxxxxxxxxxxxx>smallRNA(se3)              --------->ANAC58                 >>>>>>>>>TBF1   <---------PCF2              --------->ANAC58        --------->ANAC58  <---------ANAC58            --------->ANAC46          --------->ANAC58  <---------ANAC58---------->DOF2         <-------TEIL         --------->DAG2>>>>>>>>>TBF1   --------->ALFIN1   <---------AtLEC2          ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->LBD16   gagttgcagggttcacaccaaagaaaaaaaaaaaagtcgcaaggaagaagaagaatatgcgagtgcgaccctaataaagtttttccccaaattgtttttt  5545200                                                                                                   <-                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                      ----------->GT1                                                                                    xxxxxxxxxxxxxxxxx   <---------ANAC58                                                         <---------ANAC46       <-   <---------ANAC46                                                         <---------ANAC58   <-----   <---------ANAC58                         ----------->GT1  <----------DOF2<---------ANAC58  <xxxxxx   tttttgtgtgtctaatccctaaattgattttgttttgggttttaagaagaaaatttgaagcctctttctcatacagtggcttcaatttgggttaatagat  5545300                                                                                                 <---                                                                                                 <---          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                  <---         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                    <---        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                             <-------GAMYB       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                            <---------MYB46(3)     <------ZmHOX2a(1)                                                                  <------MYB83    <------MYB83                                                                        <------MYB46(1)    <------MYB46(1)                                                                  xxxxxxxxxxxxxxxx  <--------P                                                                       <---------TOE2(3) --------TOE2(3)                         --------->ANAC55(2)                    <---------YAB1   <--- xxxxxxxxxxxxxxsmallRNA(le3)             ----------->GT1                        <---------WOX13(1)--- xxxxxxxxxxxxxxsmallRNA(fl3)             <---------ANAC55(2)              --------->ZAT2----------->GT1 xxxxxx>smallRNA(le3)          <---------AHL20(2)                         --------->At4g35610    ---- --------YAB1                 <---------AHL20(1)         --------->AHL20(2)   --------->ATHB12   <--- ----GLK1(2)                  <---------AHL20(2)   <---------YAB1      <---------At4g35610       <--- xxxxxxxxxxxxxxxxsmallRNA(se3)--------->AHL20(2)<---------AHL20(2)   <-----------GT1<-----------RAV1(1)   tatggtaggattatcggtttaatcgaggctaattaattttaaaacgtgattttatgattttaaatcgtattttagcagcttgattaatgttggttaatta  5545400  Previous    Next  AGI:  At4g08680.1    Description:  transposable element gene. Mutator-like transposase family, has a 1.4e-46 P-value blast match to GB:AAA21566 mudrA of transposon=""MuDR"" (MuDr-element) (Zea mays) Range:  from: 5542428    to: 5544859    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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