Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  <---------WOX13(1)                                                                              <---------MYB46(3)                                                         <XXXXXXXXXXXXXXXXXXXXMIR4228                                                      <---------TOE2(3)     <---------MYB52(1)                           <-----------HVH21         --------->MYB52(1)    <-------GAMYB        xxxxx   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           <---------ANAC58        <---------MYB46(3) <------NtERF2 ---->ANAC46              --------->ANAC46    <-------GAMYB<---------MYB46(3) --------->ATHB12<------ -----ETT(1)          <xxxxxxxxxxxxxxxxsmallRNA(i)<---------ANAC58       <------NtERF2       <------- ->ARR14(2)        <xxxxxxxxxxxxxxxxsmallRNA(s)<---------MYB52(1)      <---------DEAR3(1)   <-------- ->GLK1(2)   --------->YAB1<-----------TGA1  <---------ANAC58      <---------TOE1(3)       <---------RAP2.6(2) --ARR14(2)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ANAC58      <---------TOE2(3)    <-----------RAV1(1)   gacatctaagttcaatcgcaagtgattcccgtcactgaaatcgttttccgttgcttaacgatggtttttaaggtcgtcgttgattgacatatggtggctg  5521300                       <---------At4g35610                       <---------ZAT2                       --------->At4g35610                      ------>NtERF2                     <---------RAP2.3(2)        ------>ZmHOX2a(2)       <------ZmHOX2a(2)            <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <---------ARR11(3)       <---------At5g28300      --------->ARR11(3)      <-----------GT1      <---------AGP1 <---------RAP2.6(2)       <---------WOX13(1)      --------->AGP1 <---------RAP2.3(3)  <---------At4g35610         --------->At4g35610 xxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxx>smallRNA(s)    --------->ATHB12 ---ANAC46          --------->RAP2.6(3)   --------->At4g35610         ----------->RAV1(2)          <- --At4g35610      ----------->HVH21<---------MYB52(1)  <---------YAB1 <---------At4g35610        ---- -MYB46(3)   <---------AHL20(2)xxxxxxxxxxxxxxxx>smallRNA(i)  <-----------GT1                    <----   atttgttagatctatttgatttgacggctgagttactgtttgtttgctgactgatttatgatttatcaattcatctgtgtctgagtttgttttatgctgt  5521400                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                  --------->At4g35610                                                  <---------At4g35610                                                  <---------ZAT2                --------->TOE2(3)                ------>NtERF2       <---------TOE1(3)                        <---------RAP2.3(3)                      --------->CCA1(2)       <---------TOE2(3)                        <---------RAP2.6(2)                    --------->YAB1       <---------YAB1                           <---------RAP2.3(2)                   <---------YAB1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      --------->RAP2.6(3)            --------->GLK1(2) --------WOX13(1)          <---------MYB46(3)----------->HVH21 <---------TOE2(3)   <---------MYB52(1) ----->ATHB12   --------->TOE1(3)       <---------MYB52(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -----YAB1   <-----------GT1       --------->GLK1(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------YAB1   gattgagttatggtttaaccttacatcgatggctgagtttctgttatatgacggctgagtttgtttatgttatggctgagtttctgttatgatatggttg  5521500                                                                                                   <-                                                                                                   <x                                                                                                   <-                                                                                               xxxxxx                                                               <---------At4g35610            xxxxxxx                                                          --------->ARR11(3)                 xxxxxxxx                                        <---------WRKY18(1)    --------->At4g35610         <xxxxxxxxx                                  <---------YAB1--------->GLK1(2)     xxxxxxxxxxxxxxxx>smallRNA(i) <-                                  <---------TOE1(3)       <---------AHL20(2)           xxxxxxxxxxxxxx                                  <---------TOE2(3)       --------->AHL20(1)           xxxxxxxxxxxxxx                     <---------MYB46(3)----------->HVH21  <---------AHL20(1) <---------TOE2(3)<xxxxxx   agtttgtttatgttttgactgagttgttgttatgttatggtttgactgagtttctgttaatatatagctgagttagatttatgttatggctgagttatgt  5521600              <------MYB83          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <---------ANAC46    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <-----------RAV1(1) --------->ALFIN1 --------ANAC46 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --------YAB1 <------MYB46(1) xxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(si3)                                                    <-----------TBP xxxxxxxxxxxxxxx>smallRNA(le3)                                       <---------ANAC58 xxxxxxxxxxxxxxsmallRNA(si3)                                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------ANAC55(1) <---------TOE2(3)                    <------MYB46(1)       <---------TOE1(3) xxxxxxxxx>smallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------ANAC58 xxxxxxxxx>smallRNA(se3) <---------YAB1                 <------MYB83 ----------->RAV1(2) xxxxxxxxxxxxxxxxxsmallRNA(le3)                        --------->MYB59        <---------TOE2(3)   tatgtgtggctgagataggtttatgttatgactgagttatgttatctatggctgagttaggtttatgttttgcctgagttatggtatttgtagatgagtt  5521700                                          <---------YAB1                                          <---------TOE2(3)                                 <---------At4g35610                              --------->SPL7                             --------->MYB52(1)                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  --------->ANAC58                             xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->AtLEC2                            xxxxxxxxxxxxxxxx>smallRNA(i)           --------->ANAC58                           <---------ANAC58  *TSS   <---------At4g35610      <-----------GT1                   <------------CBF       <---------TOE1(3)        ------>MYB46(1)                  --------->ATHB12    <----------DOF2              --------->ANAC46       <----------DOF2   <---------TOE2(3)       <---------ANAC58----------->GT1         ------>MYB83  --------->ANAC46----   tgttttatgttatggctgagttattgaatgcttacggctgatttatggttatacagatgtctgaagaccaagcaagggattaccctccaagactttaccc  5521800                                              --------->TOE1(2)                                             <---------ZAT2                            --------->CCA1(2)                                           --------->DAG2                             --------->ARR11(3)     <---------ARR14(2)                   ---------->DOF2                             <---------ARR11(3)     --------->ARR14(2)           <-----------GT1     --------->GLK1(1)           ---------->DOF2    <------ZmHOX2a(1)             --------->YAB1      <---------GLK1(1)         <------ZmHOX2a(1) <-- <------ZmHOX2a(1)    ---------->DOF2----------->RAV1(1)                --------->GLK1(2)--------->CCA1(2) ----->LBD16 <---------LBD16   --------->YAB1--------->ZAT2 --------->AtLEC2   <----------ID1   -----   agaggaggattctaatctggagagtaaaggcattaatcacaacataaagctgggagatttccctgcaattagagaatcaataggaaaagatatatgggaa  5521900                                                                                                   --                         <---------WOX13(1)                                                        <-           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                            ---------          <---------ALFIN1         <XXXXXXXXXXXXXXXXXXXXMIR827     --------------->AtSPL8   <--------   ---------->DOF2     --------->ATHB12                            --------------->AtSPL3   <-------- <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        <--------P                    --------- -------ARR14(2)      --------->AHL20(2)                    ----------->GT1 <---------ARR11(3)     <- ------>ARR10         <---------AHL20(2)            <---------AtLEC2 <---------ZAT14<xxxxxxxxxxxxxxxx   gaactgaaagagacaccgcttggattaattgctaagcttgttgatagtcattttgtatggtctggtaagactgtacattatctactatgcagacagctga  5522000                                     --------->ANAC58                                   <---------WRKY12                                   <---------WRKY45                                  <<<<<<<<<<WRKY6                                  --------->WRKY18(1)                                  <<<<<<<<<<WRKY11                                 <-----------HVH21                                <------MYB46(1)                                <------MYB83                                 ----------->GT1                               <---------MYB46(3)                          --------->ANAC55(2) ------->ARR14(2)             <---------ANAC58                             <---------ANAC55(2)  ----- --------ARR14(2)        <---------ANAC46                               ----------->HVH21      <----- >At4g35610              <---------ANAC58                              <-----------HVH21       <----- -ZAT2                   <---------ANAC58                          >>>>>>>>>MYB98              ------ -At4g35610        <---------TOE2(3) --------->ANAC58             <-----------GT1          <------ZmHOX2a(2) >ZAT2     <------ZmHOX2a(1)  <---------ANAC46                   <-----------GT1 --------->AHL20(2)<- --------ZAT14 <----------DOF2<---------ANAC58                  <---------AHL20(2)   xxxxxxxxxxxxxxxx xxxxxxxsmallRNA(le3)  ------->TEIL<---------WRKY38(1)       ------->TEIL <---------LBD16 --------->AGP1   gaatactgaagaaggagctttgatgtatcgtggctggtcaacccatccagtttggattgaacgaattttaacatatcacgggtttaaatacagatcaact  5522100                                                                --------->LBD16                                                              --------->MYB46(3)                                                             --------->MYB52(1)                                                             ------>MYB83                                                             ------>MYB46(1)                                                             -------->P                                                      --------->ALFIN1      ---------->DOF2                               --------->ANAC55(2) ------>MYB83                                       <---------ANAC46 ------>MYB46(1)                                    <---------ANAC55(2) -->GAMYB                                           <---------ANAC58 ----MYB111(2)        --------->At4g35610           <---------ANAC55(1)         --------->HSFB2a(2) ----MYB46(2)         <---------At4g35610           <---------ANAC58       ------>ZmHOX2a(1)    ----- --->MYB46(3)         <---------ZAT2            <---------GLK1(1)      <---------ARR11(3)       ----- --------MYB59  ----------->RAV1(2)             --------->GLK1(1) ----------->HVH21    ------->TEIL xxxxxxx>smallRNA(si3)--------->ZAT2        --------->LBD16 --------->MYB55(1)  <---------HSFB2a(2)   acctacataaaagtttgagcctgaagctgactacaaaacgttcttcagggaattgcgtgtgccaaccggtgaaggtcctattctagatgaacttaggcaa  5522200  Previous    Next  AGI:  At4g08650.1    Description:  transposable element gene. hypothetical protein Range:  from: 5521745    to: 5525854    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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