Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        ------->PIF5                              --------->TOE1(2)                       <-------PIF5                             --------->ANAC58                        ----------->RAV1(2)                             --------->ANAC55(2)                     --------->ZAT2                             --------->ANAC58                        --------->At4g35610 -------ARR11(3)             <---------ANAC55(2)                    --------->MYB52(1)            --- ------>ARR11(3)        --------->ZAT6                             <---------ALFIN1          <------- --->AHL20(2)           <---------------AtSPL3                    --------->MYB46(3)         <------- -->GT1               <-----------GT1                            ------->TEIL                <-------   aatctcgaggtaatgaaacaatataaacagtacgtaagaagagatttgtatgatatactgaggcatgaaccacctgcatacctgtttctcaagttgctta  5515300                                           <---------LBD16                          <---------------AtSPL8                                          --------->ALFIN1                       <---------AHL20(2)                                        <---------ZAT2                          --------->AHL20(2)      <---------At4g35610               --------->ZAT2                          <---------AHL20(2)      --------->At4g35610               <---------At4g35610               --------->YAB1      ----------->RAV1(2)               --------->At4g35610         <-------TEIL<---------AHL20(1) ------>ZAT6                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->TOE2(3) --ANAC58                    <---------HSFB2a(2)            <------ZmHOX2a(1)--------->YAB1 --ANAC58                    --------->HSFB2a(2)          <---------TOE2(3) <---------YAB1         <- --ANAC46 <---------GLK1(2)--------->At4g35610     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------   gctctagcatctgattcttcacacttatcttctgcaagtcgaagctggggatgcacaaattaggatgggatgcataccataataaaattgtacaaggatt  5515400                                                             --------->ATHB12                                                             --------->YAB1                        --------->AHL20(2)              --------->AHL20(2)                        <---------AHL20(2)           --------->YAB1                      --------->ARR14(2)                    <---------CCA1(2)               <---------YAB1               <---------AHL20(2)              --------->ARR14(2)              --------->MYB46(3)                 --------->AHL20(2) --------MYB59--------->ARR11(3)       <---------WOX13(1)   <---------YAB1    --------->AHL20(2) ->YAB1       <---------ARR14(2)--------->ANAC46  --------->YAB1             --------->AHL20(2)   atctaacttcaaaacaaatcttgtatattaatacacataagattggcaacaactatgataaaatgataggctagtccaaataaaaaattcaaatttgcca  5515500                                                     <---------ARR11(3)                    ----------->GT1              ---------->DOF2                    --------->YAB1             <------ZmHOX2a(1)         --------->YAB1                     <---------LBD16         --------->ATHB12            --------->GLK1(2)         <--------ATHB1             <---------GLK1(2)--------->ARR11(3)        <---------ATHB12     <---------ATHB12 --------->LBD16                <---------MYB52(2)        <---------YAB1 <-----------GT1  <----------DOF2                 ----------->GT1           ---   gtgtaattcaatgatagcttaattgtaacaaatcaagagattcttttcaggaaaagatgtcatcaaatgaaattgagtaactaatccatactgacaccaa  5515600                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                  <--                             <---------MYB111(2)                                                  <--                             <------------MYB.PH3(2)                                            -----                             --------->MYB46(3)                                               -------                             <---------MYB111(1)                                              -------                     <----------DOF2                                                       <---------AHL20(2)                    <---------DAG2                                                         --------->AHL20(2)                 <---------ALFIN1                                                         --------->YAB1              <---------bZIP60(1) <----------DOF2                           --------->TOE2(3)--------        <-----------GT1      <---------MYB46(2)                 <-----------GT1          ----------->TBP -------->GT1 --------->bZIP60(1)<---------DAG2    <-----------GT1       *TSS   --------->GLK1(2) ---   gtgtgaaaatttactggcatcaccttttctaactacctttcattttcttcatataacatttgaattttacatcagtttccataatctaactataaaaata  5515700                                                                                            ---------                                                                                        ------>ZmHOX2a(2)                                                                                       --------->GLK1(1)                                                                                       <------ZmHOX2a(2)                                                                                      --------->ARR11(3)                                                                                      <---------ARR11(1)                                                                                      <-----------ARR10 -------ATHB1                                                                         <---------ARR14(2) ------>HAHB4                                                                         --------->ARR14(2) --------ICU4                                                                         <---------AGP1 -------YAB1                                                                          <---------ARR11(3) -------ATHB51                                                  <---------ANAC58     <------NtERF2 ---->YAB1                                             <---------ANAC58              <---------ARR14(1) -->AHL20(2)                                           <---------ANAC46              <---------CCA1(2) -->AHL20(1)                                           <---------bZIP60(2)         <---------DEAR3(1) ->YAB1     --------->ARR11(3)                 ------>ZmHOX2a(2)<---------ANAC58 xxxxxxxxxxxxxxxxxxxx ------>ICU4<---------ARR11(3)         --------->ATHB12<---------ANAC58      <-----------RAV1(2)   ataattcaacttgatatctatttgaaatttagtttgattcttgatttgatctatatgacttggaatccttgtgtctgaatcaggggcggatctacattag  5515800            <-------PIF5            ------->PIF5            ------->MYC3            <-------MYC2            <-------MYC3            <-------MYC4                                         <----------DOF2            ------->MYC2                                      <---------ARR11(3)           <---------HSFB2a(1)                          ----------->GT1           --------->ANAC58                             <------MYB83   <---------------AGL15           --------->ANAC58                             <---------MYB46(3)        --------->ZAT18                                 <------MYB46(1)--------------->AGL15  -------        <---------ZAT18                               <---------WOX13(1)                <---------ZAT18    --------->CCA1(2)                          --------->ICU4 --------->ARR11(3)        --------->ZAT18 >TOE2(3)  --------->HSFB2a(1)            ----------->GT1    <---------CCA1(2)      <---------ICU4  < xx>smallRNA(i2)                   <----------DOF2  --------->ATHB12<-----------GT1--------->ICU4  <-   catgagatagggcacgttccccatactacttcttaaactttagctagtaacaattgattggttatatcttttacatcatttagcaataagtgccctatgc  5515900             <---------ZAT6             --------->ALFIN1<---------ZAT18 <----------DOF2         <-------TEIL        --------->REM1(2)         <----------DOF2                              - -->ANAC46 <---------ANAC46  <---------ZAT14<---------ANAC58                              <---------ANAC58 ---------ARR11(3)           --------->ZAT14<---------ANAC58    <---------YAB1<---------GLK1(2)   --- --------ALFIN1    <<<<<<<<<<GATA-1        ---------->ID1    <---------AHL20(2)           <---------ANAC58   cacatcttagatgcagtgttcgatacccctgtgtacaatgtttttggcttttattctctttattttatatttgttttccacattcttgtttagcgtcttc  5516000           ------->TEIL         <-------TEIL                    <---------TOE2(3)                --------->YAB1      --------->At4g35610   <---------YAB1----------->GT1         --------->AHL20(2) -------->AHL20(2)     --------->ATHB12 ---------->DOF2   --------->At4g35610          <----------DOF2 ------>ANAC55(2) <---------YAB1  <---------MYB52(1)      <---------At4g35610 ---------->DOF2   atgtaattagatgcatttttcttattcattgttatcgttttttaaagtaaaactatgttctgctgaaaataaacaaaaataaaagtattctttttcagtt  5516100                                                                                    --------->YAB1                                                                                   <---------YAB1                                                                             --------->AHL20(2)                                                                             <---------AHL20(2)                                                                         <---------YAB1--------->YAB1                                                                         --------->AHL20(2)                                                                         <---------AHL20(2)                                                                        <---------AHL20(2)                                                        ---------->DOF2 --------->AHL20(2)--------->YAB1      <---------YAB1       --------->TOE1(3)         --------->YAB1 --------->REM1(1) <---------YAB1    <---------AHL20(2)     <----------DOF2       <---------YAB1    ------>MYB83  --------->YAB1   <---------YAB1          --------->TOE2(3)  --------->ICU4       ------>MYB46(1) ----------->GT1  <---------AHL20(2)    <-----------GT1     --------->YAB1       <---------MYB59 <---------ICU4   ctatttttatttttgtaattctagtttaactttaacaaatttgaagtcataactattgtaaagtatacctacattttaattaaaaatgataataaaaact  5516200  Previous    Next  AGI:  At4g08645.1    Description:  pseudogene, hypothetical protein Range:  from: 5514495    to: 5515673    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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