Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         --------->LBD16                                                                      --------->HSFB2a(2)                   --------->ALFIN1--------->WRKY12                   <---------HSFB2a(2)                <------------AtMYB77   ------>NtERF2                 --------->ZAT14              --------->MYB52(1)   ----------->HVH21            <---------MYB52(1)     ------>ZmHOX2a(1) <---------At4g35610                     <-----------HVH21        --------->AHL20(2) ------------------>WRI1         --------->At4g35610       --------->GLK1(2)         <---------ANAC55(2) ->ZmHOX2a(1)------->GAMYB      <---------MYB46(3)       ------>ZmHOX2a(1)       <-----------HVH21 -----YAB1  <---------MYB52(2)  <-----------RAV1(1)    ----------------->AG  --------->ZAT6 --->TOE2(3)<---------MYB46(2)<---------At4g35610  <------ZmHOX2a(1)<xxxxxxxxxxxxxxxxsmallRNA(i)   cattgtcctcatcaactaactgtggagttgccatctgttgacgccttgccataggattcctaatctgtcagtccagaaaacactatcacataaaatccct  5511600                                                                                     <---------ANAC58                                                                                 <---------ZAT2                                                                                 <---------At4g35610                                                                                 --------->At4g35610                                                                                 --------->ZAT2                                                                           ------>ZmHOX2a(2)                                                                          <------ZmHOX2a(2)                                                                         --------->AGP1                                                                         <---------ARR14(2)                                                                         <---------ARR11(3)                                               <-----------GT1           --------->ARR11(3)                                           <---------YAB1                --------->ARR14(3)                                           --------->AHL20(2)            --------->ARR14(2)                                           <---------AHL20(2)      ==============HOX2a_HOX2a                         --------->DAG2   <---------AHL20(2)       ===============HOX2a_HOX2a                        ---------->DOF2   --------->AHL20(2)       <------ZmHOX2a(1) <---------ANAC58                  ----------->GT1        --------->YAB1==========================HOX2a_HOX2a                <---------ZAT14     <---------MYB52(1) ===========================HOX2a_HOX2a                --------->ZAT14    <-------GAMYB       <------ZmHOX2a(1) <---------ARR14(3)            <---------ICU4        ----------->GT1   <-----------RAV1(2)----------->ARR10   acattgcaaaaccctcattacagtgaaaaagtgagtctgttaattttaattaccacaggagagcgagaaggatgagatcttccagctgcgagtccaatgc  5511700                                                                                   --------->ANAC58                                                                                --------->LBD16                                                                               --------->RAP2.6(2)                                                                               --------->RRTF1(2)                                                                               --------->RAP2.3(2)                                                                               --------->ANAC58                                                                               --------->ANAC58------                                                                              --------->RAP2.3(1)                                                                             --------->At4g35610                               --------->ARR11(3)                            <---------At4g35610                      ---------->DOF2               <-----------HVH21       --------->DEAR3(1) <-----                     <---------WRKY12              --------->TOE2(1)  <---------bZIP60(1)      ------                     <---------WRKY45              --------->TOE1(1)  --------->bZIP60(1)   <--------              <---------YAB1   <---------ARR11(3) ------>ZmHOX2a(1) <-----------GT1--------->ANAC58 <        <---------MYB52(1) ---------->DOF2 <---------ARR11(3)      ----------->HVH21        ---------      <---------YAB1 <---------WRKY38(1)   --------->ARR11(3)  --------->ATHB12--------->ANAC46<-----   tccctgttccgatagcattatagtcaaaggaaaggtcttcatcactatcttcctcgtcccctgtttgatttgacatcacagccgcaagtctctgagcagc  5511800                                                                                    --------->YAB1                                                                                    --------->ATHB12                                                                                   <---------YAB1                                                                                --------->TGA2(2)                                                                               <-----------TGA1                                                                              --------->TGA1a                                                                              <---------TGA2(1)                                                                              --------->TGA2(1)                                                                              --------->ANAC55(2)                                                                              --------->O2                                                          ----------->HVH21   <---------O2                                                          ----------->TGA1    <---------TGA1a                                                     ------->MYC3             --------->ANAC58 --->ZAT2 --------->At4g35610                        <-------MYC2             --------->bZIP60(2) ----ZAT2 <---------At4g35610                        ------->MYC2             --------->bZIP60(1) --->At4g35610              <---------ZAT2    ===================================HOX2a_HOX2a -At4g35610                 <---------At4g35610      <-------MYC3             <---------bZIP60(1) ----------DOF2             --------->ZAT2    ------>ZmHOX2a(2)               --------->ANAC58 >At4g35610 <----------DOF2 ----------->RAV1(2)    ------->TEIL           <------ZmHOX2a(1) ----At4g35610              --------->At4g35610 ------>ZmHOX2a(1)<-------TEIL<-----------STF1   tgcttttgtctgagctttcttagcattcgaagctggcccagcatttgatcctgaacgtgtatgacgatgcattagaggagacgtcatcataggcgaagat  5511900                         ------>ZmHOX2a(1)            <---------SPL7            --------->LBD16           <---------ANAC58           <---------ANAC58           <---------ANAC55(2)           --------->ANAC55(2)                          <---------WRKY12           <---------ANAC46                            --------->DOF5.7(2)          --------------->AtSPL8                      <-----------HVH21          --------------->AtSPL3                      --------->TOE2(3)                 --------->YAB1        <---------ARR14(2)               <---------ANAC58                               <---------ICU4        --------->ARR14(2)               <---------ANAC58                   <------------CBF     ------>ZmHOX2a(1)  <---------MYB59  <---------ANAC46            ---------->DOF2 --------->YAB1   ggtgttcctggttccgtactcttattcctaacatgaataggtctcgtgtttctcatcgtcaactacaaaaattaagcacattgattttcatcatcacatt  5512000                                                             ------>MYB83                                                             ------>MYB46(1)                                                           <---------MYB59                                                           --------------->AGL15                                                           <---------------AGL15                                                          ----------------->AGL3                                                          <-----------------AGL1                    -                <---------WOX13(1)              <---------AHL20(2)                                  <               <------------CBF                 --------->AHL20(2)                              -----              --------->ATHB12       <------------CBF     ----------------->AGL1           ----------             <---------YAB1       --------->ANAC46        ----------------->AG            --------->DAG2      ------------>AtMYB77        <---------ALFIN1      <-----------GT1                  ---------->DOF2 ------------>CBF          <---------ICU4   --------->AHL20(2)                  <---------GLK1(1) ---   cacatcaatggcagtttgattggaactaaaaattccacacattgaattaaaaaaatagttaccaaatttgtcaaaattttggaaatcacagaaaagtgaa  5512100                           --------->LBD16                          <---------ANAC58                          <---------ANAC46                          <---------ANAC58                                                        <-- ----------->GT1          <---------ANAC55(2)                                                     --- --------->LBD16          ----------->GT1                            --------->TOE2(3)        ------- -------->HSFB2a(2)  <---------AHL20(2)    --------->TOE1(3)      <---------GLK1(1)          -------- ---------HSFB2a(2) <---------AHL20(2)     --------->TOE2(3)      --------->GLK1(1)          -------- ---->GLK1(1)       --------->AHL20(2)  <---------GLK1(2)      ------->GAMYB                --------- ->GT1       ---------->DOF2     <---------AHL20(2)         ----------->RAV1(1)      ---------->DOF2 --------------------->ANAC81    --------->AHL20(2)       <-------TEIL  ---------->DOF2    ----------   atccagaaaaatggaaaaagaattaaatgcgtgaattaaacagaaccttacaaaattagattcaacagaaatctcaaagaatgtttcaaaagaaaaagca  5512200           <---------------AGL15           --------------->AGL15          <-----------------AGL2          <-----------------AGL3          ----------------->AGL2          <-----------------AGL1   <---------AHL20(2)   --------->AHL20(2)   <---------AHL20(1)   --------->AHL20(1)                                                                 ------->GAMYB  --------->AHL20(2)  <------NtERF2                                                  --------->MYB46(3) -------ATHB12        --------->At4g35610                                      <----------DOF2 ------>ICU4          <---------At4g35610           <-----------HVH21         <---------ANAC58 ----->CBF----------------->AG                 ------>ZmHOX2a(2)              <---------ANAC46 ->ANAC58 <-----------------AG               <---------ARR11(3)               <---------ANAC58 ->ANAC58 ----------------->AGL1          <---------WOX13(1)           <---------ANAC58 >DAG2    ----------------->AGL3       ----------->HVH21               <---------ANAC58 >DOF2  <-----------GT1       <-----------GT1--------->ARR11(3)        <---------ANAC46<-----------HVH21   atgaataaatttgccatttatggcagcacatatttctctctctgactgatcttcggtcatttagccagaaattgcgagtggctttcaacggtcggattga  5512300                                               <---------YAB1                                             --------->ATHB51                                            <---------YAB1                                         <---------AHL20(2)                                         <---------AHL20(1)                --------->ATHB51         --------->AHL20(2)               --------->AHL20(2)                <---------ICU4           --------->AHL20(1)               <---------AHL20(2)                --------->AHL20(2)    <--------ATHB1                     <---------AHL20(2)                <---------AHL20(2)    <---------AHL20(2)              --------->AHL20(2)               --------->ICU4         <---------ICU4                  <---------AHL20(2)             --------->YAB1           --------->ATHB51               <---------AHL20(1)            <---------AHL20(2)        --------->AHL20(2)             --------->AHL20(1)            --------->AHL20(2)       --------->ICU4                  <---------AHL20(2)          --------->TOE2(3)          <---------ATHB51          --------->TOE2(3)          <----------DOF2            <---------ATHB12          <---------MYB59<---------AHL20(2)   <---------GLK1(2)             --------->LBD16  <---------YAB1     --------->AHL20(2)       <------   gaacagtttcttctttaattatttatactttcatccccaataatttattattgttatcgatagtacctaaatttatttattttatagttttcatcccacg  5512400       <--------ATHB1               --------->YAB1       -------->HAHB4              <---------YAB1       <--------HAHB4             --------->AHL20(1)       --------->ATHB51           --------->AHL20(2)       <---------ICU4             <---------AHL20(2)                             <---------TOE2(3)       --------->YAB1            --------->YAB1                        <-------TEIL      --------->ICU4            <---------ATHB12                   --------------->AtSPL3      <---------YAB1         --------------->AGL15                 <---------TOE2(3)      <---------ATHB51  <---------DAG2                             --------->MYB59    --------->YAB1      <----------DOF2        --------->YAB1<---------TOE1(3)   <---------TOE1(3) ----------->GT1       <---------DAG2         <---------YAB1 <---------TOE2(3)  ---------->DOF2 ---TOE1(2)    ---------->DOF2  <---------ATHB51   <----------DOF2 <---------------AtSPL8        ----   attgtgtaataattatccaaagtacccttttccaattataatagcattatcatctttttgtttatggtttaggtacagtttttaaagttttctcacggtt  5512500  Previous    Next  AGI:  At4g08630.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G48860.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO68373.1); similar to Os01g0928100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045273.1) Range:  from: 5506995    to: 5511956    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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