Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         <---------bZIP60(2)                                                                       <---------ANAC58             --------->TOE2(3)                                         <---------ANAC58             --------->TOE1(3)                                         <---------ANAC46           <---------TOE2(3)                                        ----------->HVH21   --------->ARR14(2)                                              <-----------HVH21     --------->ATHB12 -------->YAB1                                                  ------->TEIL  <-----------HVH21 --------ATHB12              ----------->GT1                   --------->MYB52(1) --------->ANAC58 ----->WOX13(1)       --------->YAB1   ---------->DOF2       <---------MYB52(2)   --------->ANAC58   aatcatatacactaacattaacaagtataagaggcaaaacacaaagcgagagagagagagagaacgaaccgtgacgggcctatcaggcaattgattacac  5466300                                             <---------MYB52(1)                                            <-----------HVH21                                           --------->DEAR3(1)                                        <---------ALFIN1                                --------->ANAC58                                --------->ANAC58                              <---------YAB1                                --------->ANAC46                           <---------YAB1                              <---------DOF5.7(2)                    <---------MYB52(1)                             --------->ARR14(2)                     <-----------TGA1                             --------->ZAT14<-----------TGA1        <-----------HVH21               -                           --------->At5g28300--------->ATHB12     --------->ANAC46 <---------YAB1 --   agagaacaattcaagtcttcacaaatcgcagtaaacgcatcaacaccgtcattgagactcgcgatttctccgtcactcttattattctcatcggcttcac  5466400                       <----------DOF2                     --------------->AGL15           <-------TEIL                     ------>ZmHOX2a(1)        --------->YAB1                 <-------TEIL                 --------->ARR14(2)     <-----------HVH21                  <---------GLK1(2)      <--           --------->ARR14(2)           <-----------TGA1              ------>NtERF2               ===           --------->GLK1(2)           --------->ANAC46               ----------->RAV1(1) <------ZmHOX2a(1)           <---------ARR14(2)      ----------->RAV1(2)              --------->MYB46(3)    ===========   <---------ALFIN1  <---------------AGL15 --------->WOX13(1)     --------->ANAC46        =========== -------->YAB1  <---------MYB52(1) <---------At4g35610  --------->At4g35610--------->ARR14(2)   <---- ------->MYB46(3)<---------ARR14(2)--------->At4g35610  <---------At4g35610<---------ARR14(2)   =====   aatcaccactgagtatccgtttcctctttttagtctcatctgcgtcagtcatagattcatcggccttcgagccaccagattcgtcggaaacaggaagagg  5466500                                              <---------SPL7                                             <---------ANAC46                                          ------->PIF4                                          <-------MYC3                                          <-------PIF4                                          <-------MYC2             <------NtERF2                                          ------->MYC3            --------->LBD16                                          <-------MYC4           --------->ATERF1(2)                                          ------->MYC2           <---------ATERF1(2)                                          <-------PIF5           <---------HSFB2a(2)                                          ------->MYC4           <---------ANAC46                                          ------->PIF5           --------->HSFB2a(2)                                         --------->ANAC55(2)    <---------LBD16                                         <---------ANAC55(2)   --------->MYB52(1)                                         --------->TGA1a      --------->ALFIN1                                         <---------ANAC46    ------->PIF5                                         <---------ANAC58    <-------MYC4                    --------                                         --------->O2        <-------PIF4                   <--------                                         <---------TGA1a     ------->MYC2                   ---------                             =========================================bZIP_DOF          --------->LBD16          <------NtERF2      ---------->DOF2 <---------ANAC58<-------MYC3              --------->DEAR3(1)         --------->LBD16     ======================bZIP_DOF  ------->MYC3              <---------ANAC46        --------->DEAR3(1) --------->ANAC58  <---------ANAC58<-------MYC2            ------>NtERF2       <---------------------WRI1        <---------bZIP60(2) ------->PIF4            --------->LBD16       <---------LBD16     --------->ANAC58 <-------TEIL     <-------PIF5           --------->DEAR3(1) ----ZmHOX2a(2)        <------ZmHOX2a(1)------------>OsbHLH66------->MYC4     --------->GLK1(2) =============================HOX2a_HOX2a<---------ANAC58   --------->TGA1a   <---------ARR14(2) ====HOX2a_HOX2a==============HOX2a_HOX2a<---------O2       <---------TGA1a   --------->ARR14(2) ======================HOX2a_HOX2a   <-----------HVH21     ------->TEIL      <---------GLK1(2)<------ --ZmHOX2a(1)   <------ZmHOX2a(2)   --------->ANAC58       ------------>OsbHLH66    --------->ANAC46 ======================HOX2a_HOX2a  --------->ANAC58      <------------OsbHLH66   ------>ZmHOX2a(1)<-   atcaacatcgccggagcgatcaagaggagacgaaagggaagtcacgtgcgtaggggtaatgcacgtgccggaagtgagagattcctccgccgtagataca  5466600                       --------->ANAC46                     --------->O2                     =========================bZIP_DOF                     =======================bZIP_DOF                     ====================================bZIP_DOF                     <---------TGA1a                     <---------ANAC55(2)                     --------->ANAC46                     --------->ANAC58                     --------->ANAC58                     --------->ANAC55(2)                     ==============================MYC_MYB               ================MYC_MYB               <--------P               <---------WOX13(1)                   ================HOX2a_HOX2a              =================MYC_MYB              ------>ZmHOX2a(2)              <-------GAMYB                        <------ZmHOX2a(2)             <---------MYB46(3)                    =================HOX2a_HOX2a   <---------ANAC46  <---------O2                 --------->ARR14(2)   <---------AtLEC2  --------->TGA1a              <---------ARR11(3) ->CCA1(2)<---------ZAT2                      ---------->DOF2 -ARR14(2)--------->ZAT2<-----------HVH21  ------->GAMYB                                        <---- >ARR14(2)<---------At4g35610           --------->MYB52(1)   <------ZmHOX2a(1)             <--------- -TEIL    --------->At4g35610      ---------->DOF2--------->ARR11(3)                   <---------ZAT18 ----------HVH21----------->HVH21---------->DOF2  <---------ARR14(2)*TSS           --------->ALFIN1   cagtcgcatggaagctggttgacacgcgtcatttcgaaagagcaacggcaaagatcggagagaggaatgctctagagtctagagagtagggctcttttat  5466700                      <---------ANAC58                      <---------ANAC58       --------->ANAC46           --------->AHL20(2)       --------->ANAC58 <------NtERF2           --------->CCA1(2)       <---------ANAC55(2)        <---------AHL20(2)       --------->AHL20(2)       --------->ANAC55(2)       <---------AHL20(2)        <---------AHL20(2)       --------->ANAC58------>NtERF2         ----------->ARR10   <---------TOE2(3)            ------- -----YAB1            <---------ANAC46  <---------LBD16   --------->AHL20(2)                 -------- -DOF2 --------->ANAC55(1)       --------->AHL20(2)       <---------AHL20(2)        ---------->DOF2   gagagggacacgaaatgtgaagaggcgcgttttaaaaaaatttggggaagagatgccaaatttttttatggtatacacatttacttcaaagtactaaaag  5466800                                                     --------->AHL20(2)                                                 <----------DOF2                                    -                                                 <---------DAG2                                     <                                              <-----------GT1                                       -                                           <---------ICU4                                           <                     ---------->DOF2      --------->ICU4                       <----------DOF2     --                   ------>MYB46(1)   --------->HSFB2a(2) <---------AHL20(2)    <---------DAG2    ----                   ------>MYB83      <---------HSFB2a(2)--------->AHL20(1)  <---------AHL20(2) <-----   ----------->GT1----------->RAV1(1)--------------->AGL15               <---------ICU4       <------ -->DAG2       -------->P---------->DOF2 <---------AHL20(2)          ----------->GT1   ----------->GT1 -->DOF2    xxxxxxxxxxxxxxxx>smallRNA(i)--------->YAB1  <---------AHL20(1)  <-----------GT1   -------   ttgaatagaaacaaaactaccaacaaagaaagtttgtttctataaaaattactttttatatatttagagtatagataattactttattttggtgaatatc  5466900                                                                                          <---------YAB1                                                                                       <---------MYB52(1)                --------->AHL20(2)                                                    <----------DOF2              <---------YAB1                                                         --------->TOE2(3)           --------->ICU4                                                          ---------->ID1     ----------->GT1                                                               <-----------GT1 -------->AHL20(1)                      <---------AHL20(2)                     <---------YAB1 ---------AHL20(1)        --------->AHL20(2)                                  <---------AHL20(2) -------->AHL20(2)     <---------ARR11(3)                                     <---------AHL20(1) ---------AHL20(2)     --------->ARR11(3)<---------AHL20(2)                 <---------AHL20(2) ------->AHL20(2)<---------YAB1         --------->AHL20(2)               --------->AHL20(1) ----->TOE2(3)<---------TOE2(3)      ------->TEIL              ----------->HVH21  <-----------GT1 ----YAB1  <---------YAB1 <---------AHL20(2)                 <---------O2--------->AHL20(2) ---ARR11(3)<---------AHL20(2)    --------->ANAC55(2)        --------->O2<---------AHL20(1) -->ARR11(3)--------->AHL20(2) <---------AHL20(2)        <---------YAB1  <---------ARR11(3) <--------   attaaattggataattaatattatagattttattttatgtattttaatttcgaaaaattattctcgtgacaactatatattatttttcctttatttttat  5467000                                                                                   <---------AHL20(2)                      <----------DOF2                                              --------->AHL20(2)                   <-----------GT1  <---------MYB46(3)                            --------->ICU4       <---------At4g35610<---------AHL20(2)        <---------YAB1           ----------->GT1      --- -AHL20(2)--------->At4g35610   <---------YAB1--------->AHL20(2)     <-----------GT1   --------->YAB1   gttttgctcagcaactgtattttacttttatattgtgtttgttcaaaatgaaatatgagtaaatctaattttaaacgtctagtaattaataaaaactcta  5467100                                                                                              <------                                                                                              -------                                                                                            ---------                                                                                          --------->At4g35610                                                                                     <------MYB46(1)                           <---------AHL20(2)                                        <------MYB83                          <---------AHL20(2)                                      <-------GAMYB------                          --------->AHL20(1)                                     <---------MYB46(3)                          <---------AHL20(1)             <---------AHL20(2)      --------->MYB52(2)                          --------->AHL20(2)            --------->YAB1           --------->MYB46(2)                      --------->ICU4                   <---------YAB1            --------->MYB111(2)                    --------->YAB1  <-------TEIL      <---------AHL20(2)         --------->MYB111(1)                   --------->AHL20(2)                 --------->AHL20(1)       <---------MYB52(1) <--     --------->AHL20(2)  --------->AHL20(2)           --------->AHL20(2)      ------------>MYB.PH3(2) ------>YAB1     --------->YAB1 <---------YAB1       --------->YAB1    --------->AHL20(2) <---------At4g35610   taagagttttaatatacaaaaataaaaattaattttgatacatgtaagaatagaattataatattatctaaaactaaataagttagttggtaagcggata  5467200  Previous    Next  AGI:  At4g08590.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to ORTH2/VIM1 (VARIANT IN METHYLATION 1), DNA binding [Arabidopsis thaliana] (TAIR:AT1G57820.2); similar to similar to A. thaliana AT4g08590 [Arabis gemmifera] (GB:BAC11916.1); contains InterPro domain SRA-YDG (InterPro:IPR003105); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 5463882    to: 5466668    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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