Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                ------>ZmHOX2a(2)             --------->GLK1(1)             <---------GLK1(1)             <------ZmHOX2a(2)            <---------ARR11(3)            <---------AGP1            --------->ARR11(3)            <---------ARR14(2)            --------->ARR14(2)           <---------GLK1(2)         <---------ZAT6           <------ZmHOX2a(1)--------->ALFIN1                                  --------->YAB1        <---------LBD16  --------->DAG2                 --------->MYB52(1)  <---------WOX13(1) ----------DOF2        ---------->DOF2                 ----------->HVH21 --------->ICU4   ttctttaaactcaggatctctaaacaaaaggtgctactagagctaagacacatgaaaatgacggtttttatcgccaagattgataacattttcaatagta  5380200                                                                                 --------->ZAT14                ----------->GT1                                                  <---------ZAT14                <---------ANAC46                                                 --------->ZAT18              <---------ZAT14                                           ---------->DOF2             --------->ALFIN1                                         --------->ANAC58      --------->WOX13(1)                                              --------->ANAC46     --------->AHL20(2)                                               --------->ANAC58     <---------AHL20(2)                                           --------->ANAC58   ----------->GT1 <---------YAB1--------->ALFIN1    ---------->DOF2                --------->ANAC58------------>MYB.PH3(1) <---------AHL20(2)      <-----------GT1                      --------->ANAC46----------->GT1   tgtataattaatcaagtgtggtgaaataaacaatcccaatagcgaagctattgttcatacataaacacaagcacgaaagagagtaaactgttacaaagtt  5380300                                           ------>ZmHOX2a(2)                                          <------ZmHOX2a(2)                                         <---------ARR11(3)                                         --------->ARR14(2)                                         --------->ARR11(3)                                         <---------ARR14(2)                                         -                                         --------->ARR14(3)                                         -                                         --------->AGP1                                        ------           --------->ARR14(2)            <---------ARR14(3)                                    ------           <---------GLK1(2)     --------->DAG2                                               <------           <---------ARR14(2)   ---------->DOF2         ---------->DOF2                       -------  <----------DOF2           --------->ANAC58     <-----------HVH21       --------->YAB1       <------ >>>>>>>>>>>>WRKY18         --------->ANAC58<----------DOF2 --------->YAB1 <----------ID1--------->YAB1   ttgacttttgacaaattcgcatagagagtcaagaaaaagtcgagatctttgtgtcaccaaaagcataagaaccaataagaacaaaaaacaatagaaatga  5380400 -------->ANAC58         <---------ANAC58 -------->ANAC58         ----------->GT1                                         <------ZmHOX2a(2) -->HAHB4                <---------ANAC58                                       --------->ARR14(2) --->ATHB12              <---------ANAC46                 <------ZmHOX2a(2)     --------->AGP1 ---YAB1                <-------TEIL <---------CCA1(2)   --------->ARR11(3)     <---------ARR14(2) -->ICU4       <<<<<<<ZML2       --------->TOE2(3)       <---------ARR11(3)<-----------GT1 ---ATHB12 --------->TOE1(2)     --------->TOE1(3)   ---------->DOF2   <---------ARR11(3)        <---   ttaagccagaaaacctagaacacaaattcgtgaaaccctaaatctcagaacaaaacaaagatcgatttcgcaagatttaacagatcgacatcatatgaga  5380500                                                                                              <------NtERF2                                                                                              -------                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                             ------>NtERF2                                                                                             <-------                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                           <---------ABI4(1)                                                                                           --------->RAP2.3(1)                                                                                           --------->ATERF1(1)                                                                                           <------NtERF2                                                                                          <---------ATERF1(1)                                                                                          <---------DEAR4(2)                                                                   <---------RAP2.6(2)    <---------RAP2.3(1)                                      <---------MYB46(3)          --------->ATERF1(1)    <---------DEAR3(1)                                    <---------MYB52(1)     --------->LBD16               <---------RAP2.3(2)                                   --------->LBD16--------->LBD16 --------->RAP2.6(3)   <---------At4g35610    -------->HAHB4                <---------ATERF1(2)     <---------ANAC58      <---------RAP2.6(2)    --------->YAB1                <---------DREB2C(2)     <---------ANAC46      <---------ANAC46    --------->ATHB12              <---------DEAR3(1)      <---------ANAC58      <---------ANAC58    <---------ICU4            --------->ATERF1(1)<---------ANAC46<---------ATERF1(1)    --------->At4g35610   --------->ICU4            <---------ATERF1(1) <---------ANAC55(2)   <----------DOF2---------->CDC5   <---------ATHB12     <-----------RAV1(2) <---------MYB46(3)  <---------ARR14(2)    <-----------RAV1(2)   <---------YAB1     -------->P------>NtERF2   <---------LBD16<------ZmHOX2a(1)<---------ANAC58 ---ZmHOX2a(2)    <---------At4g35610<---------AtMYB61   <---------LBD16     --------->ALFIN1<-------   tcgaaatgattacaaaatcgagcttaccaggcgatgccggtggttttggttacggagattgcggaggagacggccttaagtggcggtctcagcggcggcg  5380600                                                                              <---------AHL20(1)     *TSS                                                              ----------->GT1     <-----------GT1                                                <------------CBF  <---------REM1(1)                                               <---------YAB1 -->RAP2.3(1)                                                    ------>ZmHOX2a(2) --ORA47(2)                                                     <---------At4g35610 --RAP2.3(1)                                                    --------->CCA1(2) --DEAR4(2)                                                    --------->ARR14(2) --ATERF1(1)                                                   <---------ARR11(3) >ATERF1(2)            <------------CBF                        --------->ARR11(3) -ATERF1(2)    ------>NtERF2           --------->AHL20(1)      --------->AGP1 --------->AHL20(1) >DEAR3(1)    <---------RAP2.6(2)      <---------AHL20(1)      <---------AGP1 --------->ARR11(3) -DEAR3(1)   --------->RAP2.6(3)    --------->AHL20(2) <----------DOF2----------->GT1 -RAP2.3(2)----------->HVH21        <-----------TBP    <---------DAG2<---------WOX13(1) -ANAC46 <----------DOF2<---------WOX13(1)       <----------DOF2<------ZmHOX2a(2)     ---------->DOF2 -RAP2.3(3)--------->WRKY12 <---------YAB1   <---------TOE2(3) <---------ARR14(2) ----------->GT1 --ERF1 --------->TOE2(3)  <---------TOE2(3) <---------TOE1(3)<---------GLK1(1) <------------CBF   atagatgtaacctttgacggccagagattgatgtttgtttatatattaaggctttagctttttgagatctgattgttaaaaatattgttaaaggcccatt  5380700                                                                                                    -                                                                                                   --                                                         --------------->AGL15                     <-                                                         <---------------AGL15         <---------ANAC58                                                        <-----------------AGL3         <---------ANAC58                                                        <-----------------AGL2         <---------ANAC46                                                        ----------------->AGL3       --------->ARR11(3)              <----------DOF2              <----------DOF2                     ------>ZmHOX2a(1) <<<< --------->AHL20(2)                   <<<<<<<<<TBF1   <---------ARR11(3)      --------->TOE2(3)  <--- <---------AHL20(2)            <---------YAB1         --------->GLK1(2)  <---------At4g35610  -------   tgtttaattctctgggcatttaggcctcttcttatgcttcttcttcttttcttcagtatctaaatttagtacttcggcttcctaaaatttcttgaatatt  5380800                                                                                     <---------------                                                                              --------->ANAC58                                                                              --------->ANAC46                                                                              ------>MYB46(1)                                                                           --------->MYB46(3)     <--                                                                    <---------ARR14(2)          -----                                                                    --------->ARR14(2)          <---- ------>GAMYB                                                 --------->DEAR3(2)   --------->MYB52(1) ------->MYB46(3)                                           --------->ARR14(2)------>MYB83      ----- --------MYB55(2)        --------->TOE2(3)                  <---------ARR14(2)--------->ANAC58 <----- <<<<<GT-1            <-----------GT1                   <---------LBD16<---------MYB59     --------->DAG2 --------GT1      --------->WOX13(1)  --------->RAP2.6(3) --------->LBD16------>MYB83---------------- -->YAB1<-----------GT1  --------->TOE1(3)             --------->MYB52(1)------>MYB46(1)  ---------->DOF2   aaccaccatttcacattcttcaattaaccatagaagttagaacggcttaggcataaaaaccggaaccgaagaaccgaaccaagccaaaccgaaaaaggaa  5380900          <---------HSFB2a(2)          >>>>>>>ZML2          --------->HSFC1(1)     <------MYB83                     <---------GLK1(1)    --------->MYB59                   --------->GLK1(1)  <---------MYB52(1)         <---------HSFB2a(2)  --------->ARR14(2)         --------->HSFB2a(2)  <---------ARR14(2)     <---------ARR14(2) --AGL1   --------->HSFB2a(2)------>ZmHOX2a(1) -------LBD16            --------->ARR11(3)                                                      ---- ---->ARR14(2)           --------->ARR14(2)                                   --------->MYB46(3) <--- -----ARR14(2)           <---------ARR11(3)                            <-----------GT1  --------->ARR11(3) ---->GLK1(2)           --------->CCA1(1)                         <---------ANAC46      <---------ARR11(3) ----GLK1(1)     --------->ZAT6 --------->MYB52(1)                <---------ANAC55(2)  --------->GLK1(1) ->AG<------MYB46(1)    --------->RVE1(1)      --------->ZAT6     <---------YAB1--------->MYB52(1)   tccggttcggttctagataatactaaatatcctcgaacggatttcagtcacactatccattgaatattatgtataactgaacaaaccgaatatctatgga  5381000                           <---------WRKY45                           <---------WRKY38(1)                           <---------WRKY12                          --------->WRKY18(1)                  <---------AHL20(1)                  --------->AHL20(1)                  <---------ARR11(3)           --------->MYB46(3)  ------->GAMYB     <-----------ARR10  <------MYB46(1)                                          --------------->AGL15     <---------ARR11(3) <------MYB83                                             ====================     --------->GLK1(2) --------->MYB59                <---------ZAT18<---------MYB52(2)             < ----->GLK1(1)    --------->ARR11(3)         --------->REM1(1)     <-----------GT1                  - ------GLK1(1) --------->AHL20(2)    --------->ANAC46 --------->ZAT18--------->MYB46(3)      --------   aatccaaaatctaaccaaaaaatatttggtcaaccctatacaaaactacatctaagcccactacatttttaacaaacctataacccaatagagttttgtt  5381100  Previous    Next  AGI:  At4g08460.1    Description:  protein binding / zinc ion binding. similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G77770.1); similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G77770.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO61799.1); contains InterPro domain Protein of unknown function DUF1644 (InterPro:IPR012866); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 5377120    to: 5380605    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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