Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   <---                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                <------MYB46(1) <----                                                                                <------MYB83    -----     <---------ANAC55(2)                                                     <---------ANAC46   <---- ------>ALFIN1                --------->YAB1                                 <---------ANAC58   ----- -----ANAC46           <---------ANAC58                                      <---------ANAC58-------- -->ZAT18              <---------ANAC58                                  <---------MYB52(1) <-------- ---ZAT14       <----------DOF2                                    --------->KAN4(2)       <---------TOE2(3) -->ZAT14    <---------TOE1(2)<-----------GT1                   <------ZmHOX2a(1)    <---------YAB1   gtggaacaagtatcgtagcttcaaggcttgaataacaacacatagtttcagtatggtttttgtttaggacatacccttggcttggttatgtttgatgttt  5285800                                                                                            <<<<<<<<<                                                                                           <------ZmHOX2a(2)                                                                                           ==========                                                                                          <---------ARR11(3)                                                                                    <xxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                         <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) ------ANAC58                                                       <---------ZAT14xxxxxxxxxxxxxxxxxx ---MYB46(1)                                                        --------->ZAT14<xxxxxxxxxxxxxxxxx ------ANAC46                                                    <xxxxxxxxxxxxxxxxsmallRNA(i) ------ANAC58                                                    xxxxxxxxxxxxxxxx>smallRNA(i) ---MYB83                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->ARR11(3) -----MYB46(3)                                --------->TOE1(3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ---->MYB111(1)                               --------->TOE2(3)---------->DOF2   <xxxxxxxxxxxxxxxxxxx -----AtMYB61                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <----------DOF2 ---->MYB46(2)                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <---------DAG2 ->ATHB12                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxx -YAB1   --------->AHL20(2)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->ZAT18<xxxxxxxxxxxxxxxxx   ggtgtttcagtttaaatttctactaaacaatgttttttgttctgtttaccttaatcttgtaagtggaaagtccactgttacactttttgtaagatcacag  5285900                                                                             --------->AHL20(2)                                                                             <---------AHL20(2)                                                                             --------->AHL20(1)                                                                             <---------AHL20(1)             <----------DOF2                                                 <---------ARR11(3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       <---------AHL20(2) <<<<<<<<LFY <---------DAG2                                      --------->AHL20(2) ==========================HOX2a_HOX2a                          <---------AHL20(2)                  - xxxxxxsmallRNA(i2)                                         <---------AHL20(2)          <-----------GT1 xxxxxsmallRNA(fl3)                                         <---------YAB1   --------->ARR11(3)     - xxxx>smallRNA(si3)         --------->ARR11(3)   <---------YAB1 --------->AHL20(2)   <---------ICU4<- xxxxsmallRNA(si3)      ---------->DOF2          <---------AHL20(2)         --------->AHL20(2)    --- xxxxsmallRNA(si3) --------->LBD16              <---------AHL20(2)       <---------AHL20(2)     <---- xsmallRNA(le3)  <---------LBD16    <----------DOF2       --------->YAB1--------->AHL20(2)     <----- xxxxxxsmallRNA(le3)<------ZmHOX2a(1)           --------->AHL20(2)      <---------AHL20(2)<---------YAB1   tggtatgaaaaacaacttttcaggaaaaaagaccatgactttacttaaattttaattgttttataatttaaaaattaaatatattgctaattaccattta  5286000                                                 -------->P                                                 ------>MYB83                                                 ------>MYB46(1)<---------TOE1(2)                                                --------->MYB55(1)                                               --------->MYB46(3)                                               <---------MYB111(2)                                               <---------MYB46(2)                                               <---------MYB55(2)                                               --------->DEAR3(1) <---------ALFIN1                              <---------MYB111(1)  <-------TEIL ----->MYB46(1)                                --------->AtMYB61<---------TOE2(2) ----->MYB83                                --------->REM1(1)  <-----------RAV1(2) --------ALFIN1                             --------->ANAC46------>NtERF2 ------>MYB46(3)      <----------DOF2  <-----------GT1     --------->DEAR3(1) -------GT1       <----------DOF2    <---------AHL20(2)   --------->MYB46(3)                       <- ------GT1   <---------ARR11(3)--------->ANAC55(2)    <---------MYB52(1)        --------->YAB1   <---   cccactcccgttcaagttctctttctttttgacacttattttttctacaccaaccagttagccacccaggttcataggcgaagcatcatgaaatttgatt  5286100                                                                                      ------>MYB46(1)                                                                           <------------CBF                                                                        --------->At5g28300                                                                       --------->TOE1(3)                                                                       --------->ANAC46   -----------                                                                       ------->GAMYB  ------>MYB83                                                                       --------->TOE2(3)  --------->LBD16                                                                     <---------At5g28300<---------LBD16            <---------MYB52(1)                                      --------->MYB52(1)--------->ARR14(2)            --------->At5g28300                                     <-----------GT1   <---------ARR14(2)      ---------->DOF2         --------->LBD16                   --------->WOX13(1)   --------->WOX13(1) ----------GT1              <---------LBD16                   ------------>CBF      --------->AtMYB61 ------AHL20(2)          <----------DOF2<----------DOF2       <---------ATHB12     ------------>CBF   taaaccattaaaccggtaattgcaaaactttccggtttagttctttcttacagaccaaaaacaaatcaattaaccgtaattgcaaaccaatccggttaaa  5286200              ------>MYB46(1)                                                 --------->MYB52(1)              ------>MYB83                                                   --------->TOE1(2)            --------->DEAR3(1)               <-----------GT1                <---------MYB52(2)            <---------ALFIN1            <----------DOF2              --------->At4g35610            --------->AtMYB61           ------>ZmHOX2a(1)          <-------TEIL                 ----- >GT1    --------->ANAC46 *TSS          <---------DAG2   --------->GLK1(1)  --------->MYB46(3) <-----   atccaaaaacaacaccaccctcttcgaaaatcgttgagagtcctttttcacttcttcagatttctagggttcgctcaaacaaacgaagagaaactcaaat  5286300                                    --------->TOE2(3)                                    --------->TOE1(3)                                 <---------ARR14(2)                                 --------->ARR14(2)                            --------->ARR14(2)                         --------->HSFB2a(2)                         <---------HSFB2a(2)                        ----------------->AGL1                      <-----------GT1                    --------->HSFB2a(1)               <---------At4g35610                    --------->HSFC1(2)                --------->At4g35610           <---------ARR11(3) ------>ZmHOX2a(2)    ---------->DOF2           --------->ARR11(3)<------ZmHOX2a(2)   ------>NtERF2                          --------->ANAC46           <---------GLK1(2)<---------ARR14(2)   --------->LBD16                 --------->At5g28300 ---->GLK1(2)       <---------HSFB2a(1)         <---------ANAC46                ----------->GT1 ----GLK1(2)        <---------HSFC1(2)        ------>NtERF2                    <---------DEAR3(1)   tctgtaatctatagattttggaaatttccagatcggaaccctaaacgatgccgcgaagcagagacgaagacgatgaattagacggtgactacgaagcatt  5286400                                                                  <---------HSFB2a(2)                                                                  <---------HSFC1(1)                                                                  --------->HSFB2a(2)                                                               <---------ARR14(2)                                                              <-------GAMYB                                                             <---------DEAR3(2)                                                             <---------MYB46(3)                                                            <---------DEAR3(1)                                                           <------NtERF2                                                           --------->ATERF1(1)                                                          <---------DEAR4(2)                                                          <---------RAP2.3(1)                                                          <---------RRTF1(1)                                                          <---------ERF1                                                          <---------ORA47(2)                                                          <---------ATERF1(1)                                                          ------>NtERF2                                                          <---------RAP2.6(1)                                                         <---------ANAC58                                                         <---------ANAC46                                                         <---------RAP2.3(2)                                                         <---------RAP2.6(2)                                                         <---------ATERF1(2)                                                         --------->ATERF1(2)                                                         <---------DEAR3(1)                                                         <---------RAP2.3(3)                                                         <---------ANAC58                                                         <---------RRTF1(3)                                                         <---------DREB2C(2)                                                         <---------RRTF1(2)                                                        <---------ABI4(1)                                                        <------NtERF2 --------->ANAC46              -                                                        --------->ATERF1(1)                        --                                                       <---------ATERF1(1)           <------ZmHOX2a(2)                                ------------------------>ANAC81--------->ARR14(2)    ================                                >>>>>>>>>TBF1         <---------DEAR3(1)            --------->ARR11(3)                     <----------ID1                   ----------->HVH21             <---------ARR11(3)                <------ZmHOX2a(1)  >>>>>>>>>TBF1      --------->ALFIN1--------->ANAC58      <--------              ------------------------>ANAC81      --------->ALFIN1   --------->ANAC58     --------->AHL20(2)       <------ZmHOX2a(1)     >>>>>>>>>TBF1     <------ZmHOX2a(1)  >>>>>>>ZML2   <------ZmHOX2a(1)  <-   agatttagaggaagaagaggaagaagacgaagaagaagaagaagagagaggaagaggtggcggcggttctagacggaagagaggaagatcgaattttatc  5286500                        <------ZmHOX2a(1)                 --------->GLK1(2)                <---------ARR11(3)                --------->ARR11(3)                <---------GLK1(2)                --------->ARR14(2)                <---------ARR14(2)               --------->HSFC1(2)               <---------HSFB2a(1)                                         <---------ZAT2            <------ZmHOX2a(1)                                              --------->At4g35610      <---------At4g35610                                                  --------->ZAT2          --     <---------YAB1  <---------LBD16                          --------->ALFIN1                     <- -------->YAB1 <---------HSFC1(2)                 <---------TOE2(3)        <---------At4g35610------- ------->ICU4  --------->HSFB2a(1)                <---------YAB1      --------->DAG2          ------- ==================HOX2a_HOX2a                --------->ARR11(3)     ---------->DOF2     ---------->DOF2 -AHL20(2)<---------TOE2(3)                 <---------YAB1   --------->LBD16    <---------------AGL15 --------YAB1 ----------->ARR10    ----------->TGA1         <---------ANAC46    --------------->AGL15   gatgattatgctgaggaagattctcaggaagaagatgatgacgatgaagattatggtagtagccgtggaggtaaaggagctgctagtaagagaaagaagc  5286600                                                                               <--------P                                                                    <---------At4g35610 ------->At4g35610                                                  --------->At4g35610 --------At4g35610     ---------->DOF2                           ---------->DOF2 -->ANAC58           <---------HSFB2a(2)<---------YAB1          <---------REM1(1) -->ANAC58 <---------AHL20(2)           --------->ICU4  <------ZmHOX2a(1)    ----------->GT1    <----   catctgcttctattttcttagaccgagaagctcatcaagttgatgatgaagacgaagaggaagaagatgaagcagaagatggtaagtactcttgaatttt  5286700  Previous    Next  AGI:  At4g08350.1    Description:  KOW domain-containing transcription factor family protein. Identical to Putative transcription elongation factor SPT5 homolog 1 [Arabidopsis Thaliana] (GB:Q9STN3); similar to transcription initiation factor [Arabidopsis thaliana] (TAIR:AT2G34210.1); similar to RNA polymerase II transcription elongation factor SPT5 [Physcomitrella patens subsp. patens] (GB:EDQ63231.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO60892.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68098.1); contains InterPro domain Transcription antitermination protein, NusG, archaea; (InterPro:IPR003257); contains InterPro domain Translation protei Range:  from: 5286226    to: 5292236    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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