Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              <---------HSFB2a(2)        <---------ICU4     --------->YAB1    <---------YAB1                                          ------>ZmHOX2a(1) ----------DOF2                                            --------->TOE2(3)           --------->GLK1(2) ---------DAG2              <----------DOF2             <---------ARR11(3)      --------->TOE2(3) -AHL20(2)  --------->HSFB2a(2)                     --------->REM1(1)           --------->TOE1(3)   gactttatcatcatctcgaatgtgaaacggcttcatggataagagagaaatgcttcaacatcctcagccatttcagcgtgagccttaacaatcttgggat  5270700                                                                  ===================HOX2a_HOX2a                                                                  ------>ZmHOX2a(2)                                                                 <------ZmHOX2a(2)                                                                 ====================HOX2a_HOX2a                                                                <---------AGP1                                                                <---------ARR11(3)                                                                --------->ARR14(2)                                                                <---------ARR14(2)                                                              <------NtERF2                                                             ------>NtERF2                                                             --------->LBD16                                                            <---------LBD16                                                            <---------ANAC46                                                      ==================HOX2a_HOX2a                                                    =================================HOX2a_HOX2a                                                    ------>ZmHOX2a(2)                        <---------ETT(2)          <---------ARR14(2)              --------->ANAC58                    --------->ARR14(2)              --------->ANAC58                <---------At4g35610<---------At4g35610         <----------ID1 --------->ETT(2)--------->ANAC58    --------->LBD16        <------MYB83 --------->DEAR3(1) --------->ANAC58   <---------LBD16        <------MYB46(1)<------NtERF2  ---------->DOF2 ===================HOX2a_HOX2a                <      <--------P---------->DOF2      <---------ATHB12 ------>ZmHOX2a(1)       ------>ZmHOX2a(1)  <xxx      --------->ALFIN1<---------ATERF1(1)     ----------->RAV1(2)--------->At4g35610            -----   agtgcgaggtagggacaagaaagccgtcgacaatggccaaacaagcacatctgatcctcatgccgggatctgagataatccttctcttcaacattgtaat  5270800             <-------TEIL         ----------->GT1      ------------>AtMYB77     --------->ETT(2)     <---------WRKY12     <---------WRKY38(1)                                             <---------ZAT18     <---------ETT(2)                                           <---------ZAT14    --------->WRKY18(1)                                         --------->ZAT14                     -   <--------ZAP1                                                --------->LBD16                     <   <-----------HVH21     --------->ANAC58           <---------ARR14(2)                              <  --------->LBD16        --------->ANAC58           --------->ARR14(2)  <----------DOF2            <- ---------LBD16        ---------->DOF2   ----------->GT1       --------->ANAC46              -------- xxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->At4g35610        <---------LBD16                <------- ---->MYB46(3)--------->REM1(1)    <---------At4g35610  ------>ZmHOX2a(1)       ------>ZmHOX2a(1)  --   cacccggtcaacagttacatcttcttcaagcccaaacagcttattgtaaaatggtatcctcttccccgcagtgcctttcttcctcttcatcttcaagctc  5270900                                                                  <------NtERF2                                                                 ------>NtERF2                                                                 --------->LBD16                                                                 <---------RAP2.6(3)                                                                <---------ANAC46                                                                <---------RAP2.6(2)            ------    <-----------GT1                                             --------->ATERF1(2)            ------ -------->GLK1(1)                                               <---------ATERF1(2)         <-------- ---------RVE1(1)                                            --------->ALFIN1    <---------ARR11(1) ---------CCA1(1)                                     <---------ARR14(2)         <-----------ARR10 --------ARR14(2)                                     --------->ARR14(2)         <---------ARR11(3) ->ZAT2                                         --------->DAG2 --------->RAP2.6(3)          --------- --ZAT2  <---------ALFIN1                      ---------->DOF2 <---------LBD16   --------->ARR14(2) ------->ARR14(2)          --------->ARR11(3)------->GAMYB<------ZmHOX2a(1)     <---------CCA1(2)   ggatattttccacactgtaacccgataactatcttgaactctctcaacgaaaagcgaataggagtgccggcaaataaaacccatatctcattcggtttcg  5271000                                                                                       --------->ARR11(3)                                                                                       <---------ARR14(2)                                                                                       <---------ARR11(3)                                                                                 --------->SPL7                --------->ANAC46                                                ------>MYB83             -------->P                       --------->ANAC46                 <---------SPL7             ------>MYB46(1)                  --------->O2                    <---------MYB59        ------->GAMYB --------->YAB1          --------->ANAC58                --------->MYB46(3)       --------->MYB46(3)                   <---------ALFIN1            --------->ANAC46      --------->At4g35610                 --------->SPL7                --------->ANAC58      --------->ZAT2 ----------->GT1     ------>NtERF2                  --------->ANAC58      <---------At4g35610                <---------PCF5               --------->MYB46(3)<------ZmHOX2a(2) --->ANAC58  ------>MYB83               --------->DEAR3(1)            ---------->DOF2  --------->ARR14(2) --->ANAC58<---------MYB111(1)          --------->LBD16        <---------GLK1(1)------>MYB46(1)     - -ARR14(2) <---------MYB59            <---------LBD16     <---------LBD16 ----------->HVH21     <---- >ARR14(2) <---------MYB46(2)  ---------->DOF2--------->ANAC58 --------->GLK1(1)--------->MYB52(1) --   caacttccaactgcctacccagaatgaaaattctaaagctcgcggaccacgcgagtagtttggggaattccaacaagcgaccgaacgaagatcgagcaat  5271100                                                                                                  ---                                                                                             --------                                                                                             --------                                             *TSS                   <---------WRKY18(1)      --------                                           <---------TOE2(3)       --------->WRKY12          --------      <---------ALFIN1                     <---------TOE1(3)       --------->WRKY45   <---------ARR14(2)     ------>NtERF2                  --------->ANAC46               --------->WRKY38(1)--------->ARR14(2)     <---------At4g35610          --------->ANAC58               <-------MYC3       <---------MYB46(3)     --------->At4g35610          --------->ANAC58               ------->MYC3      --------->ALFIN1-- -------->MYB46(3)                --------->ANAC46              --------->ANAC46   <---------AtMYB61 -----ATHB12               --------->YAB1  --------->DAG2   --------->CCA1(2)    <---------ANAC46 --- ------->At4g35610    --------->ZAT18----------->RAV1(1) <---------YAB1        <---------ANAC46   ---   gaactgccgctctccatcgtctagggcattgataacacaccacataaggttttcattttctgatacacgttgaccctctcgtcgtgtggttcttcacgaa  5271200                                       ------>ZmHOX2a(1)      <-----------HVH21       <------NtERF2   <---------ATHB12           --------->ATERF1(1) --------->WOX13(1)          <---------ATERF1(1) ------>ANAC58              --------->ANAC58 ->ANAC58                   --------->ANAC58                                       --------->At4g35610 ->ANAC55(2) --------->ALFIN1------>NtERF2               --------->ANAC58          <---------At4g35610 ->ANAC46 <------NtERF2     --------->RAP2.3(2)          --------->ANAC58      <------ZmHOX2a(1) ->ANAC58<---------LBD16   --------->RAP2.3(1)         ---------->DOF2    <---------ATHB12        --- ---------->CBF            --------->ATERF1(1)    <---------MYB52(2)  --------->MYB46(3)    --------- ------>ANAC58            <---------ATERF1(1)  <----------ID1      <---------WRKY38(1)     ---------- ------>ANAC46           --------->ALFIN1  ---------->DOF2    <---------MYB52(1)  --------->ICU4 ----   acgcaatcagtcggggagggagagggagaggcgccatcttcctacaaaagaaacaaacaaagccattagtcaacaaatgaaggactgatgacaaaaagag  5271300                                                  --------->CCA1(2)                                           --------->CCA1(2)                                           <------ZmHOX2a(2)                                          <---------ARR14(2)                                          <---------AGP1                                          <---------ARR11(3)                                          --------->ARR14(2)                                          --------->AGP1                              =====================HOX2a_HOX2a                              ====================HOX2a_HOX2a           XXXXXXXXXXXXXXXXXXXX>MIR2937 -------->GT1                 <------ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) >DAG2             <---------TOE2(3)      --------->ARR11(3)          --------->AHL20(2) >DOF2   ------->TEIL        ----------->GT1------>ZmHOX2a(2)   ------>ZmHOX2a(2)    --------->DAG2 ------->GT1  <---------YAB1>>>>>>>GRF7  <---------CCA1(2)  <---------YAB1          ---------->DOF2 -   gggaaaaaatgaacttactataacgtttgtcaggaaaaatcccagatctgagagacgagttgatgatcgaaaataaaaactgccgaaaaagctaattttt  5271400                                    <---------MYB52(1)                   <xxxxxxxxxxxxxxxxsmallRNA(i)                        <---------ATERF1(1)                              --------->SPL7                        --------->LBD16           <---------AHL20(2)    <---------MYB52(1)              <---------ICU4       <-----------TGA1                    <---------SPL7              --------->ATHB12     <-----------HVH21                  <---------HSFB2a(1)             <---------YAB1------>NtERF2   <---------YAB1             --------->HSFB2a(1)--------->AHL20(2)           <---------At4g35610   <------------AtMYB77       --------->DAG2        --------->ANAC58           --------->YAB1 --------->DEAR3(1) <---------ARR11(3)   ----------->HVH21      <---------AHL20(2) --------->DOF2         ------>NtERF2    --------->YAB1    ---------->DOF2        --------->ANAC58   gggaaagttgctctgatgatttcttccgcctccaaaccgtcattcatgatatataaacttgaaaagtagcgaccgttcgataacaagctaattaaaaaaa  5271500                   --------->GLK1(2)                   <---------ARR11(3)                   --------->ARR11(3)                --------->AHL20(2)                  --------->RVE1(1)                  --------->YAB1                --------->AHL20(2)                  <---------ATHB51           --------->LBD16                          <---------ATHB12         ------>MYB83                      --------->ANAC46         ------>MYB46(1)                 <---------ALFIN1       <---------ALFIN1                 --------->ZAT14 <---------ARR11(3)       --------->AtMYB61               ------>ZmHOX2a(1)--------->ARR11(3)                --------->ATHB12       --------->DEAR3(1)     <-----------ARR10--------->ANAC58            ------>ZmHOX2a(1)       <-    <---------ALFIN1          --------->GLK1(2)--------->ANAC58 --------->ANAC46          --------->YAB1   aacatcacacctccccaaaaaaatctagagagaatcaactcctacactctagcaataatatcgtctacgctctactcctctcgatatcgaaatcataggg  5271600  Previous    Next  AGI:  At4g08340.1    Description:  transposable element gene. similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35770.1); similar to cysteine-type peptidase [Arabidopsis thaliana] (TAIR:AT3G42820.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) Range:  from: 5264212    to: 5271145    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version