Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                             <---------ICU4                                             --------->ATHB51                                             -------->ATHB1                                             --------->ATHB12                                            --------->ICU4                                            <---------AHL20(2)                                  <----                                            --------->AHL20(2)                                  <----                                            <---------ATHB51                                 --------                                       --------->DOF5.7(2)                                   --------         <---------ANAC55(2)          --------->TOE1(3)                                      <-------  --------->YAB1                    <---------TOE2(3)                                       ---------  --------->TOE2(3)                <---------DOF5.7(2)   <---------YAB1                 --------->AHL20(2) ---------ARR11(3)         <---------YAB1--------->AHL20(2)                          --------->WOX13(1) -------->ARR11(3)     ----------->GT1----------->GT1 <---------ATHB51              --------->AHL20(2) ---------ARR11(1) --------->AHL20(2) --------->TOE2(3)--------->YAB1               <---------AHL20(2) --------CCA1(2)   <---------AHL20(2)----------->GT1--------->WOX13(1)          <---------AHL20(2)   catatcttaatatgtaaacaattaatagtataaatgtaaacgttaaattattagcaattatactaaaaccatctatttttgtttaataaatcaaatatat  5204400                                                         <---------ICU4                                                         <--------ATHB1       <----------DOF2                                   -------->HAHB4                             -   <---------ZAT18                                       --------->ATHB51                       ----- -----------AtSPL8                  <---------CCA1(1)   <---------AHL20(2)                      ----- -----------AtSPL3                  <---------RVE1(1)   --------->ICU4                          ----- ->ARR11(3)                        --------->ARR11(3)   <---------ATHB51                     -------- ->AHL20(1)           --------->MYB46(3)           ----------->GT1                           <------- --AHL20(1)    <<<<<<<<<TBF1       <---------ARR11(3)   --------->AHL20(2)----------->GT1   --------- >AHL20(2)  <<<<<<<<<TBF1 --------->AtMYB61  <---------YAB1               <----------ID1    ---------   agtactgctctttcttcttcttctcccaccaaaacgagatatttgacataatagagaaataattgttcgagtattagggaaaaatttctctcccaagcac  5204500           <---------ARR14(2)                ------>ZmHOX2a(2)           --------->ARR14(2)               <------ZmHOX2a(2)           <-----------ARR10               <-----------ARR10       --------->DAG2--------->MYB52(1)    ---------->DOF2                        <---------AGP1       <---------------AGL15 -------->ARR14(2)                         <---------ARR11(3)   --------------->AGL15 ---->ANAC46      --------->ZAT6           --------->ARR14(2)  ----------------->AGL3 ---->ANAC58     <---------YAB1            <---------ARR14(2)  ----------------->AGL2 <---------MYB52(1) ---->ANAC58    <-----------GT1            --------->AGP1<-----------GT1        <-----------GT1   --- ->ZAT2    --------->ARR11(3)              --------->ARR11(3)  ----------------->AGL1--------->At5g28300 --ZAT2    <---------ARR11(3)             <---------CCA1(2)    ----------------->AG ----------->GT1 - >ANAC58  <------ZmHOX2a(1)          <-----------GT1  <----------DOF2       --------->ICU4<---------- >ANAC58 ----------->GT1         <----------DOF2   <-----------GT1---------->DOF2<-----------GT1 <---   ggtatccaaagaggatattatcagtatgtctcccgcttttaaccagatctattttacttttacatcccaaaagtagaaatttttaacggttattacccaa  5204600                                                   <---------ARR14(2)                                                   <-----------ARR10                                             <---------MYB52(1)                                            ------>NtERF2                                          <---------LBD16------>ZmHOX2a(1)                                         ------>ZmHOX2a(1)                                  ============================================bZIP_DOF                                  <---------TGA1a  <---------ARR11(3)           <-------GAMYB          --------->O2  --------->ANAC58           =================================MYC_MYB--------->ARR11(3)      <---------GLK1(1)   <---------MYB46(3)--------->LBD16                     --------->YAB1 ------>YAB1<---------MYB52(1)    <---------O2  --------->ANAC58   <----------DOF2 -------->ICU4   --------->ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------ANAC58 -GT1 ------->TEIL       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <---------DAG2 ------>ZmHOX2a(1) ------ATHB12  <---------TOE2(3)  --------->TGA1a  --------->ARR14(2)   <---------ANAC58      <------   acatgatgaactccgttgagataatgggtgattccgacgtctcctccggcaagtatctcctcttggttacttttgcttccaatcctaacatctgtttcac  5204700                                  <----------DOF2                                 <---------ANAC58                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 <---------ANAC58         <---------ANAC46                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              <--------P              <---------ANAC58       ------>ZmHOX2a(1)     <---------MYB52(1)       <---------At4g35610        <-----------GT1 <---  <---------ANAC58        <-----------RAV1(2)         <---------ANAC58<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <---------ANAC58   <---------ANAC58     --------->ZAT14 <---------ANAC58      *TSS             ---- -----GT1            <---------ANAC58     <---------ZAT14 <---------ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   ctctgcgtcctcactacaagaatgcttctcaggtagcttttctcttcactgtgtttaggtgcctgtggtattctcttgtatgttaacctgcttaagcctc  5204800                                                               ------>ZmHOX2a(2)                                                               =======================HOX2a_HOX2a                                                              <------ZmHOX2a(2)                                                             <---------ARR14(3)                                                             --------->ARR14(3)                                                             <---------AGP1                                                             --------->ARR11(3)                                                             --------->GLK1(2)                                                             <---------ARR14(2)                                                             --------->ARR14(2)                                                      --------->At4g35610                                   --------->LBD16    <---------At4g35610                    --------                              <---------At4g35610     ===============HOX2a_HOX2a             <-------                              --------->At4g35610   <---------ZAT14      --------->MYB46(3) ---------         <-----------GT1      <---------ZAT2--------->ATHB12 <---------ARR11(3)          --------->MYB46(3)        <-----------GT1       --------->ZAT2<---------AHL20(2)========================HOX2a_HOX2a   -   <---------DAG2          <---------At4g35610      --------->ZAT18   <-----------GT1  --------->ANAC46   <----------DOF2        <xxxxxxxxxxxxxxxxsmallRNA(i)================HOX2a_HOX2a   --------->ANAC46< ------ALFIN1          <-----------RAV1(1) --------->ICU4  ----------->ARR10   ------>ZmHOX2a(1)  <-- ----->ANAC46     <-----------GT1  --------->HSFB2a(2)------>ZmHOX2a(1)<-----------GT1 <---------ALFIN1   cacaactttttaaaccttttaaaccttgttgctgctccgagagcatttattgagtcctctgaagatctgtttttacccatcctactaccccacaaccatt  5204900                                                                             ----------->RAV1(2)                                                                            <---------ATERF1(1)                                                                            ------>NtERF2                                                                           --------->ANAC58                                                                           --------->ANAC46                                                                           --------->ANAC58                                                                          ------->GAMYB                                                                        ------>MYB83                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                   ------>MYB46(1)                  <---------GLK1(2)                                     -------->P                  <---------ARR11(3)                                  ------->GAMYB ->YAB1    <---------GLK1(2)                                          --------->AtMYB61 --ICU4   --------->ZAT2                                             <---------MYB55(2) >MYB46(3)<---------ZAT2    <---------At4g35610                      <---------MYB52(2) -------->ZAT14<---------HSFB2a(2)                                   --------->MYB46(3) ---------ZAT14--------->HSFC1(1)                                   -------->P -------YAB1   --------->HSFB2a(2)                  ------->GAMYB  --------->MYB52(1)            <---   actatactcaccagcttctagatacttctaagctcattgaagaaaatgagttaaccctcatgggtagactaaccaacccgcctgccgaaagactttggtc  5205000                                                      <------ZmHOX2a(2)                                                     --------->ARR14(2)                                                     <---------ARR14(2)                                                     <---------AGP1                                                     <---------ARR11(3)                                                     <---------ARR14(3)                                                     --------->ARR11(3)        <---------ANAC58                                       --------->ANAC58               <----------DOF2                                       --------->ANAC58         <-----------RAV1(1)          <---------ANAC58            --------->GLK1(1)------>ZmHOX2a(2)       <---------ANAC46          <---------ANAC58           ---------->DOF2 --------->AGP1  <---------ANAC58       <----------DOF2     <---------At4g35610       --------->ARR14(3)        <---------ANAC58    --     ------>ZmHOX2a(1)     --------->At4g35610      <---------CCA1(2)<---------ANAC58             <-- <-----------GT1          --------->GLK1(2)        ----------->ARR10 <---------ANAC46             --- -------DOF2             <---------GLK1(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxx   tttattcctctttcttgctaatagatggaatctgagagggaaagccattggctcagatcttggaaaatgttgctttcagtttcgttttgactatgaagaa  5205100             ------>ZmHOX2a(1)            <---------ANAC58            <---------ANAC58         --------->ARR11(3)         <---------ARR11(3)        --------->HSFB2a(1)        <---------HSFB2a(1)        --------->HSFC1(2)        <---------HSFC1(2)                                                <---------ICU4   <---------HSFC1(1)                                                     --------->YAB1         ----   --------->HSFB2a(2)              --------->YAB1                        <--------ATHB1         <---   <---------HSFB2a(2)             <---------YAB1                         --------->AHL20(2)    -----   --------->HSFC1(1)        --------->MYB46(3)         <---------At5g28300           <----------DOF2 ------->GLK1(1)            ------>MYB46(1)    ----------->GT1            --------->ATHB51      <---- -------ARR11(3)            ------>MYB83       <------MYB46(1)           --------->ICU4       ------- ------>ARR11(3)            -------->P<---------YAB1   <-----------GT1   <---------ATHB51     <------ xxxxxxxxxxxxxxxx>smallRNA(i2)--------->ZAT6   <------MYB83              <---------ATHB12    <-------   gatttctagaaggtccttgacaatagaccctaccactatgatcaatggatggtcattttacagcgatgggagccaataatttctgactctttcccatcat  5205200       <---------HSFB2a(2)       --------->HSFB2a(2)      <---------LBD16   <----------DOF2 ----->ATHB12 ------ICU4             --------->ATERF1(1)                                              <---------TOE2(3) ---->ICU4             ------>NtERF2                                                  --------->ICU4 -----YAB1             <---------ATERF1(1)                                --------->ARR11(3) -->YAB1              <---------PCF5                       --------->GLK1(1)          <---------ATHB51 ---ICU4            --------->HSFB2a(2)               --------->At4g35610 <---------ARR11(3)------->TEIL --ATHB12         <---------LBD16 --------->ZAT6     --------->GLK1(2)  ----------->ARR10<---------YAB1   gattcctttctggatagagcttcggggcctccctaaacactattggcagtatgagatgctgaattctatcggcgaagaacttggcaaaattatggatgtg  5205300  Previous    Next  AGI:  At4g08262.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 9.5e-30 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus) Range:  from: 5204780    to: 5210269    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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