Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                <------                                                                                              -------                                                                                              -------                                                                                              <------                                                                                            <--------                                --------->YAB1                              --------->YAB1  <--------             <-------TEIL--------->ZAT6                         <-----------GT1        --------->ARR14(2)     --------->YAB1    ----------->RAV1(1)                    <----------DOF2          <---------ARR14(2)     --------->TOE2(3)--------->MYB46(3)                <---------GLK1(2)<----------DOF2   --------->LBD16   ctcccattcttaacatacatatcaacaacactattcatcaaaacaacatcacctctcaaattctctttaccaattctttcataaaccaaaatccccagct  5185500          --------->AtMYB61      --------->MYB46(3)      <---------MYB55(2)   <-----------GT1 --------->ARR11(3)--------->ANAC58 <---------ARR11(3)--------->ANAC58 ---ZAT2 <---------MYB52(2)                               <----------DOF2 -->At4g35610  --------->ANAC46 --------->At4g35610     <---------At4g35610 -->ZAT2------>MYB83            --------->LBD16         ------>NtERF2 ---At4g35610 ------->GAMYB <---------ARR14(2)         --------->DEAR3(1) -ALFIN1------>MYB46(1)     --------->ARR14(2)     --------->SPL7<---------LBD16                    < ---RAV1(2) -------->P<----------DOF2   <---------ANAC55(2)   <<<<<<<<<TBF1                         <   gaatatcacccactaacccacaagctttcaaaaccgcagaatacataaactcgttcgccgcttcttcttcggagtctaacattcttctgtataactcaat  5185600                                                                                                 ----                                                                                                 ----                                   --------->MYB46(3)                                            ----  --------->ATHB12            --------->LBD16      <-----------GT1                         <-------TEIL ---------DAG2          --------->ARR14(2)      --------->ANAC46                    <----------DOF2 ----------DOF2         <---------ARR14(2)--------->WRKY38(1)                       <---------DAG2   agctttattgggttttccatcactcgtatacccagaaaccatcgttgtccaagttacaatatttctctcagacatttcatcgaacactttatgtgcatca  5185700           <<<<<<<<<<GATA-1                                            --------->ATHB12          --------->GLK1(1)                                          <---------WOX13(1)          <---------GLK1(1)                                         <---------ANAC58      --------->TOE1(3)                                             <---------ANAC58      --------->TOE2(3)          <---------MYB52(1)                 <---------ANAC46     ----------->RAV1(2)       --------->ANAC58               ------>ZmHOX2a(2)    -------->P                 --------->ANAC55(2)           <------ZmHOX2a(2)   ------->GAMYB               --------->ANAC46             --------->ARR11(3)                     --  <---------MYB111(2)          <---------ANAC55(2)          <---------ARR11(3)                     --  --------->MYB46(3)        <------ZmHOX2a(2)               <---------ARR14(2)                     -- ----->ANAC46              --------->ARR11(3)               --------->ARR14(2)                   <--- ----->ANAC58             <---------At4g35610              --------->GLK1(1)               <---------GLK1(2) ----->ANAC58      <-------TEIL--------->ANAC58            <---------GLK1(1)<---------ANAC55(2) <----   ctcaacaacctgaaatccacatacattgagatcacgttattcgctataaacacattttgagagatcccttgcttgattacatgagcttgaattgattctc  5185800                             <---------TGA2(1)                             --------->TGA2(1)          --------------->AtSPL8      <---------ZAT2         <---------ANAC58    <---------bZIP60(1)         <---------ANAC58    --------->bZIP60(1)         <---------ANAC46    --------->ANAC55(2)                                                 <---    ---------->DOF2          <---------ANAC46                                                   <----  <----------DOF2            <---------ANAC55(2)                                               <----- ------->ANAC46             ----------->STF1                                                   <----- ------->ANAC58            <---------TGA2(2)                                            ------------>CBF ------->ANAC58           ----------->TGA1                                             <-----------GT1 ------ALFIN1        --------->ANAC46 <---------At4g35610                    <------ZmHOX2a(1) <----- -----REM1(2)   <----------DOF2      ------>ZmHOX2a(1)   <-------TEIL       ----------->GT1    ------   cacgcttaaaggcttgtactttcccacaatgacgtaatcctgctgctataagcttcaagtccataaccattctccagtaggaaaatttttgacaattccg  5185900                                    <------MYB46(1)                                    <------MYB83                         --------------->AtSPL8                               --------->ANAC58                          <---------------AtSPL8                               --------->ANAC58              --------->ANAC58                        --------->ANAC46                     --------->ANAC58                        --------->ANAC58                     --------->ANAC46 ------MYB52(1)         --------->ANAC55(1)                 --------->RAP2.6(3) ---GAMYB<------------CBF  ---------->DOF2                 --------->MYB52(1)                     --- ----ANAC58             --------->ANAC58              <-----------------AGL3                    ----- ----ANAC58           <---------ALFIN1                ----------------->AGL2                 -------- ----ANAC55(2)       <---------REM1(2)        <---------TOE2(3)   --------->ANAC58          --------- --->ANAC55(2)--------->ZAT14--------->MYB52(1)----------->GT1    --------->ANAC58 <------------CBF   ttacatttacaaattgtatagtctccacgtaaaacggaaggtagttttatggaaaaactaaaaacggcacgctgtttagtacatgaattgatgaccgtaa  5186000     <------MYB83     <------MYB46(1)    <---------MYB46(3)    --------->MYB59    --------->MYB55(2)    --------->MYB46(2)                                                                  <---------ANAC58    <---------AtMYB61         --------->ANAC46                                     --------->MYB59    --------->MYB111(2)       --------->ANAC58                                 --------->ATHB51    --------->MYB111(1)       --------->ANAC58                   <---------At4g35610    <---------ANAC58   <--------P               --------->MYB52(1)                   --------->At4g35610 <---------MYB52(1)   <---------MYB55(1)--------->DAG2                     <---------ANAC46       <--------ATHB1  <---------MYB52(1)---------->DOF2                   <---------MYB46(3)       <------------ATHB5 ------>MYB52(1) <------MYB46(1)         ------------>CBF --------->At4g35610  <---------ICU4     --- ----->DOF2      <------MYB83--------->RAP2.6(3) <---------MYB52(1)           <---------ATHB51   ---- ->At5g28300    --------->MYB46(2) --------->ANAC58--------->MYB52(2)         <---------ATHB12<------ -->GT1         --------->MYB59    --------->ANAC58<---------MYB46(3)     ------------>CBF-----------   aaacggtaggtagtttgtttggtaaagggaaaacggcacgctgttcaatacggtagtggctgctataagctgaattttcaataattcggtacttgacatt  5186100                                                                                                  ---                                                                                                  ===                                                                                                  ---                                                                                                 <---                              ----------->GT1                                                    ====                            ---------->DOF2                                                     <----                       ----------->GT1--------->ANAC58                                          -----                       <---------------AGL15        <---------YAB1                              <----                      <---------TOE1(3)          <---------AHL20(2)                             -----   --------->YAB1     <---------TOE2(3)       ----------->GT1                                 ------- --------->CBF  --------->ARR11(3)    --------->ANAC58                                  ============= ----->YAB1     <---------ARR11(3)  --------->MYB52(1)                                  ============= ------CBF    --------->MYB59--------->DAG2<------MYB46(1)          ----------->GT1     <------ZmHOX2a(1) >HVH21 <------------CBF--------->TOE2(3)  <------MYB83       --------->AHL20(2)     <-----------RAV1(2)   gacaattacaaattgtaaggtcttaacgtaaaaagtaaaaacggaaggtagtttattttagaaaataaaaacgttacactgtttaatacaggagggaaga  5186200      <-----------TGA1                                             <------MYB83      <-----------HVH21                                           --------->MYB111(2)     --------->ANAC46                                             --------->MYB46(2)     --------->bZIP60(2)                                          --------->MYB111(1)     --------->ANAC58                                             --------->MYB59     --------->ANAC58                                            <--------P --->ZmHOX2a(2)                                                  <---------MYB55(1) ===============================HOX2a_HOX2a                     <---------MYB52(1) -------->GT1                                              <---------ARR14(2) ---ZmHOX2a(2)                                  <-----------RAV1(1)<------MYB46(1)          --------- ===============================HOX2a_HOX2a<---------CCA1(1)   --------->LBD16              --------- -----ARR14(2)                            --------->ARR11(3)  <---------HSFB2a(2)           --------- ---->ARR11(3)                          ----------->ARR10  --------->GLK1(2)               --------->RAP2.6(3) -----ARR11(3)                         <--------P  <---------ANAC46----------->GT1    --------->AHL20(2) ---->ARR14(2)                        --------->At5g28300<---------GLK1(1)     <---------HSFB2a(2) ---->ARR10                          ----------->GT1 <---------HSFB2a(2)       <---------ANAC46 ===HOX2a_HOX2a          <------ZmHOX2a(1)<---------ARR11(3) <---------LBD16 <---------ANAC46       < ====HOX2a_HOX2a--------->ZAT18   --------->MYB52(1) <---------ANAC46     <-----------RAV1(1)  <-----   tcgtaaaacgtcacgatgttcactataggaatacaagaacggtagatattatgttgtggaaattccggtaggtattatgttgtggaaattcaatacggca  5186300                            <------MYB46(1)                            <------MYB83                           --------->MYB111(2)                           --------->MYB59                                                         <-                           --------->MYB111(1)       --------->ANAC58                              ==                           --------->MYB46(2)        --------->ANAC58                              ==                          <--------P                 --------->ANAC46                       <--------                          <---------MYB55(1)        --------->RAP2.6(3)                    --------->ICU4 >ANAC58                 <---------MYB52(1)        --------->MYB52(1)                    --------->YAB1 >ANAC58      ---------->TaMYB80        <---------HSFB2a(2)                          --------->ARR11(3) >ANAC46    <------ZmHOX2a(1)         <---------ANAC46                         ----------->GT1   <--- ---------MYB46(3)   --------->MYB52(1) <---------ANAC46                  <---------ANAC46 <---------YAB1 ------RAV1(2)<---------KAN4(2)    <-----------RAV1(1)              --------->ATHB12 <---------ARR11(3)   ggctgttcattgtaggaatatacaaacggtaggtattgtgttgtggaaattcaaaacggcacaatgttcaacattggtgtgaagaaaaatctcataattt  5186400  Previous    Next  AGI:  At4g08210.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G39530.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61812.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65641.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 5183810    to: 5185870    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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