Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              --------------->AtSPL8                                            --------------->AtSPL3                                    ----------------------->TaNAC69(2)                             --------->ANAC46         <---------ANAC46    --------->ANAC58  <-----------GT1            --------->ANAC55(1) ----->ARR11(3)              --------->AtLEC2 ----->AHL20(1)              --------->ANAC55(2)                       --------->LBD16 ------ARR11(3)              --------->bZIP60(2)                       ------>ZmHOX2a(1)          <-- ---->CCA1(2)                --------->ANAC58      <---------At4g35610<---------LBD16       <-------- --->ARR11(3)          --------->ALFIN1     <---------------AtSPL8   ----------->RAV1(2) <---------ARR14(2) ----ARR11(3)        <---------bZIP60(2)    <---------------AtSPL3<----------DOF2        --------->ARR14(2)   atattcacatgttgtatactatgaagtggccacgcaatgttcttatgtagtacatctcccattacaaactttcctggacttggtctccacaaatatgctg  5092400                                <---------At4g35610                                --------->At4g35610               <---------ANAC58                               ----------->RAV1(1)                <---------ANAC58     <-----------GT1     <---------ICU4    <xxxxxxxxxxxxxxxxsmallRNA(i)      --------->At4g35610    - --------DOF2      --------->TOE1(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------MYB46(3)    --- ---RAV1(1)        --------->TOE2(3)   <------ZmHOX2a(1)         <-------TEIL<-------GAMYB<xxxxxxxxxx   ctttgtttaacaccttcttaaccttaacaattgcagcagaaggaccaagaggcatattgttcacaagttcgtgtctgtctgttgaacacaatcgaccctc  5092500         --------->GLK1(2)                      --------->ALFIN1      ------->GAMYB                             <-----------RAV1(1)   ----------->RAV1(1)                 ------>ZmHOX2a(2)                                    <--------  --------->MYB46(3)             --------->YAB1 <---------REM1(1)                           --------- ------>MYB46(1)               --------->ARR11(3)                                  --------->YAB1 ------>MYB83    <---------KAN4(1)   <---------ARR11(3)          ---------->DOF2  <---------AHL20(2) ---------->RAV1(1)            <---------ARR11(3)     ------->TEIL              --------->YAB1 ------>MYB46(3) --------->KAN4(1)   --------->ARR11(3)  <----------DOF2----------->GT1     <-------- xxxxxxsmallRNA(s)           <---------MYB52(1)xxxxxxxxxxxxxxxx>smallRNA(i)<-------TEIL   --------->ZAT18   accaacaacagaatcagcaatattccaatccattatcttgatcttaactggtgttgcatctttagcctaaagaatggtgcataaataataagtgagcagt  5092600                                                              <---------GLK1(2)                                                            <---------YAB1                                                      <---------ZAT14                                                      --------->ZAT14                                                     ------>ZmHOX2a(1)                           <---------bZIP60(2)     ------>ZmHOX2a(2)                           <---------O2            <xxxxxxxxxxxxxxxxsmallRNA(s)                           <---------TGA1a        <------ZmHOX2a(2)                        ----------->HVH21        <---------ARR14(2)                      --------->O2               --------->ARR11(3)                      <---------ANAC55(2)        <---------ARR14(3)               --------->bZIP60(2)    ------>ZmHOX2a(2) --------->TGA1a            <---------ARR11(3)               --------->REM1(1)  <---------ARR11(3)  <---------O2               --------->ARR14(3)              <-------TEIL  --------->ARR11(3)  --------->ANAC55(2)        --------->ARR14(2)           --------->At4g35610 -At4g35610     <---------WOX13(1)              --------->HSFB2a(1)           <---------At4g35610  <- >At4g35610  <---------AHL20(2)                 --------->GLK1(1)            --------->ANAC58      <- -ZAT14     <---------ARR11(3)                 ----------->ARR10             --------->ANAC58      --   gagtgatcttactagataattgacaagtgacatgggaagaagattaccgaagatcctgcagtctgattctcagaaggggaagctacatcactgtccaaga  5092700                --------->ANAC46                --------->AtLEC2                --------->ANAC58           <----------ID1          --------->DAG2        ---------->DOF2      --------->YAB1     <---------YAB1                                                       ---------->DOF2        <--- ------>ZmHOX2a(2)                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)  ---- ----------ARR10--------->ANAC58---------->DOF2              <---------ANAC46                    <--- --------ARR11(3)             --------->LBD16                <xxxxxxxxxxxxxxxxsmallRNA(i)        ---- ------->ARR11(3)<---------ATHB12      --------->REM1(1)     <---------REM1(1)                *TSS   tgatcttatcaaaaggccaagcaatcttgttccccaaagcttcaccaagtgtgtaaacagatggtgtaggcctccacaaagaaatttcataaactcaagt  5092800   ------------>CBF                            <---------ICU4 ------ZAT14                                  ------------>CBF ----->ZAT18           <---------YAB1  --------->TOE2(3)                                            - ------ZAT18    <---------ANAC46       --------->TOE1(3)                                         <--- ----->ZAT14 <---------ARR11(3)     <---------CCA1(2)                                     -----------   tcactatcaattcaagttctgtgttattactcaagttcaaatcttaaaatcaatactcaagttcaaaatcgaaacaagtgaatggtctcaagttcaattc  5092900                                                                            --------->ARR14(2)                                                                  --------->ANAC58 --------->ANAC46                                                 --------->ANAC58 -------->YAB1                       ---------->DOF2      <---------------------WRI1 ------HSFB2a(2)         --------->ARR14(2)          --------->YAB1         <---------ARR14(2) ->CBF                   <---------ARR14(2)   ----------->HVH21   --------->ANAC46              -----   tataagaaacacaaatcgatacaagtgaatactcaagttcaaagctatatgacattgaaaatcgatacaagctaagtgaatactcaagttcagttctatt  5093000                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     --------->ARR14(2)--------->ARR14(2)         <---------ICU4  ------>ZmHOX2a(1)        <---------ATHB12--------->TOE2(3)            --------->ARR14(2)       <---------------------WRI1 ---->YAB1           <---------ARR14(2)<---------ARR14(2)                   --------->GLK1(1)       <   agaaactcaaatcaatacaagtgaatcctcaagttcaagtgaatactcaaatcgatatatgcaaactaagaactacagaaatcgattcaaactaagtcaa  5093100                                        <---------ARR11(3)                                        --------->ARR11(3)                                       --------->GLK1(1)                             <---------ARR14(2)                            --------->At5g28300                                          --------->TOE2(3)                            <-------GAMYB<---------HSFB2a(1)                    --------->DAG2                           <---------MYB46(3)                                  ---------->DOF2                           <---------DEAR3(2)                ---------->DOF2--------->TOE1(3)                        ------------>MYB.PH3(1)     --------->ANAC58        --------->TOE2(3)                        ------------>AtMYB77  --------->HSFB2a(2)           <---------MYB59         <-----------HVH21<---------DEAR3(1)  <---------HSFB2a(2)  --------->At4g35610   --------->TOE1(3) -----------GT1   <----------ID1 --------->ZAT6     --------->ANAC58      --------->GLK1(2)   aataacatacctgtcaaatagagacaaggcggttaccactgaaatcttcgagacacggctaccaaaagcttctgagaacctaaaagcgaaaccctaaaac  5093200                                                                                --------------->AGL15                                                                                <---------------AGL15                                                                      --------->ANAC58                                                   ---------->DOF2    --------->ANAC58              -                                         --------->AtLEC2            <-------TEIL                  <-                                         --------->ANAC58        --------->DAG2----------------->AGL2                                         --------->ANAC58      ---------->DOF2 <-----------------AGL3   tgattaaaaccccaaatcgatgctcaaacaagtttaatgggacatgcaatccctaaatcgattagaaaaggcacataaccttctcaaattagaaacaggt  5093300  Previous    Next  AGI:  At4g08120.1    Description:  transposable element gene. CACTA-like transposase family (Tnp1/En/Spm), has a 1.0e-25 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element) Range:  from: 5090574    to: 5092794    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version