Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               --------->TOE2(3)                                <----------DOF2                                ===============================================bZIP_DOF                     <xxxxxxxxxxxxxxxxsmallRNA(s)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               --------->TGA1a     <---------ZAT14                 <-----------RAV1(2)       <---------ARR11(3)        <---------O2        --------->WRKY12            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    <---------TGA1a     --------->WRKY38(1)         <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ARR11(3)        --------->O2        --------->ZAT18        <---------YAB1--------->GLK1(1)   --------->GLK1(1) <---------ZAT18   <-----------HVH21      <---------ICU4<xxxxxxxxxxxxxxxxsmallRNA(i)  --------------->AtSPL8  --------->ATHB12      --------->YAB1<------ZmHOX2a(1)     <---------GLK1(1) --------->ZAT14 <---------WOX13(1)-------   tttttgcatcatgactgaaccaggatgtccaagtctttcatgcgatatcttaaatgtactagtaaactcacacgagtgattgtcactcgagttgactgta  4919500                       <-----------RAV1(1)                   <---------YAB1                                                  --------->ARR14(2)                   <---------------AGL15                                           <---------ARR14(2)                 --------->AHL20(2)                                                <---------GLK1(2)                 <---------AHL20(2)                                        <---------ANAC58            <---------AHL20(1)             <------ZmHOX2a(1)               <---------ANAC58      <---            <---------AHL20(2)         --------->LBD16               <---------AHL20(1)         -----            --------->AHL20(1)       <---------LBD16                 --------->AHL20(1)         <----           --------->AHL20(2)   --------->AHL20(1)                   --------->ARR11(3)         -----           --------->YAB1       <---------AHL20(1)                 <---------AHL20(1)          ------ -->At5g28300<---------YAB1     --------->AHL20(2)                 --------->AHL20(1)         -------   acatttgatgcgattatatttatatttgtggcaatataatccggaggatagcattggcaattcttctaatatatattgcctctcggattttgtgcaaaga  4919600                                                 <---------RVE1(1)                                                 <---------CCA1(2)                                                 --------->GLK1(1)                                                 <---------GLK1(1)                                                --------->ARR14(2)                                                <---------ARR14(2)                                             --------->TOE1(1)                                            <---------LBD16            <---------YAB1                 --------->TOE2(2) ------RVE1(1)                             --------->TOE1(2) ---->ARR14(2)                    <---------ARR11(3)                                                - -----ARR11(3)                    --------->ARR11(3)                                       --------->AHL20(2) ---->ARR11(3)   --------->YAB1  --------->GLK1(1)<---------ARR11(3)                       <---------AHL20(1) --->YAB1--------->ICU4   <---------HSFB2a(2)--------->TOE2(1)                             --------->AHL20(1) ---->ARR10--------->AHL20(2)   <---------ARR11(3)--------->ARR11(3)                 <------ZmHOX2a(1)   tattcaatgccatttttattcatagtctctagatgatatctataacctcggatatctttgaaacttatcaagtttctatgagacttaggagaatataatg  4919700                                                                           --------------->AGL15                                                                           <---------------AGL15                                                                          <-----------------AGL3                                                               <---------YAB1                                                              --------->ARR11(3)                                                        ------>MYB83      <-----------------AGL2                                                      <---------MYB59<---------AtLEC2     <---------ALFIN1                                                      --------->TOE2(3)   ----------------->AGL2       --------->TOE2(3)                    <-------TEIL------>MYB46(1)   ----------------->AGL3    <       <----------DOF2                   <---------ANAC58     <---------ARR11(3) <---------------AtSPL8    <---------AHL20(2)         ----------->GT1  --------->AtMYB61<----------DOF2 --------------->AtSPL8 -------->ATHB12 <---------GLK1(1)       <---------ANAC58     <-----------GT1  --------->YAB1     <--   catcatttactttaaaatgagttccccttggtattgtaaaattgggttcaccaaaacctaatattatctttacatggccatttatagtactcacacttct  4919800                                                                     --------->ANAC58                                                      <---------ANAC58                                                      <---------ANAC46------>NtERF2                                                   <---------ZAT18   --------->ANAC46                                                  <---------ANAC58   --------->ANAC58                                                  <---------ANAC58  --------->SPL7                                            xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     <--                                           <---------TOE2(3)       xxxxxxxxxxxxxxxx>smallRNA(i)   <--         --------->AHL20(2)               ---------->DOF2    xxxxxxxxxxxxxxxx>smallRNA(i)       *TSS         <---------AHL20(2)            <----------DOF2<---------ANAC58<------NtERF2        ------>ZmHOX2a(1)        --------->AHL20(2)     <---------DAG2 xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           --------->TOE2(3) ---------ZAT18    ----------->GT1     --------->TOE2(3)  ---------->DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------LBD16 --------->ETT(2) <----------DOF2--------->ARR11(3)  <-----------HVH21--------->YAB1 <--   agcggagtcatttatttcgacagataaaaaatactttttatctttaaagatagtgtgcgtagaagcactgtccgccagacatctatcttcatcctcagtt  4919900                                                                                         <---------ICU4                                                                                        <---------YAB1                         --------->AHL20(2)                                             --------->ICU4                        <---------AHL20(1)                                             --------->TOE2(3)                        <---------AHL20(2)                                  <-----------GT1                        --------->AHL20(1)                              --------->AHL20(1)                --------->LBD16                                         <---------AHL20(1) <---------TOE1(2)   --------->AHL20(2)                             <---------YAB1--------->AHL20(2) -------ANAC58 --------->HSFB2a(2)                         --------->AHL20(2) <---------YAB1 -------ANAC46 <---------HSFB2a(2)--------->TOE2(3)        <---------AHL20(2)------------>CBF -------ANAC58<---------LBD16<---------AHL20(2)          <-----------TBP--------->AHL20(2) <---------YAB1   tcgtagtttgacattttctgggataaaatatttattcattaaaactttgacatagacttatttatatgtcatcatatattacaataaaacattattacag  4920000                                                                  --------->YAB1                                                                  --------->AHL20(2)                                                               --------->TOE2(3)                                                            <-----------GT1                                                        <---------AHL20(2)                  ---------                                                        --------->AHL20(1)            <---------AHL20(2)                <---------YAB1                          --------->AHL20(2)           <---------YAB1                --------->ICU4                          <---------AHL20(1)         <---------ICU4               <---------TOE2(3)     <---------YAB1     <---------ARR11(3)         --------->ATHB12              --------->YAB1      <---------YAB1        --------->ARR11(3)        --------->ICU4        --------->GLK1(2)     <-----------GT1        --------->YAB1<---------YAB1 <---------YAB1 ----      <XXXXXXXXXXXXXXXXXXXXMIR782 --------->ICU4     --------->AHL20(2)         --------->YAB1   <---   aaaataagagcatctataatgtttgtcatatataacatgattatacatatagctataatatattacattaatattctcgttgtcatgattaatggagaaa  4920100                                            --------->ARR11(3)                                           <------MYB46(1)                                           --------->HSFC1(2)                                           --------->HSFB2a(1)                                           <------MYB83                                           <---------HSFC1(2)                                           <---------HSFB2a(1)                                <---------------AGL15                                --------------->AGL15                                            <---                                <----------DOF2                                              <-------                               <---------ANAC58                                             ---------   <---------------AGL15       <---------ANAC58 ------>ZmHOX2a(1)                           <--------   =============================================MADS_MADS                                <---------ICU4 -->GT1                   <---------ICU4  --------->MYB59                               --------->ICU4 ----->ARR14(2)     --------->YAB1    <---------TOE2(3)            ------>ZmHOX2a(1)    <---------YAB1 ------ARR14(2)    <---------YAB1   ---------->DOF2        --------->GLK1(2)          --------->YAB1   atatgccatatcaagatgactatcatcatcttggcttttaaaggaaggtcctggctgaaataatccgtcctgtttttttttttttcaaacataattaaat  4920200                        <---------MYB55(2)                        --------->MYB46(3)                        <---------ATHB12                       -------->P ----------->RAV1(1)                                    --------->DREB2C(2)                       --------->ANAC58                 --------->YAB1          <---------AHL20(2)                       --------->ANAC58            <xxxxxxxxxxxxxxxxsmallRNA(i) --------->AHL20(2)                       ------>MYB46(1)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ------->GAMYB        <---------AHL20(2)     --------->ANAC58  --------->ANAC58               <---------ATHB51        --------->AHL20(2)  <---------ATHB12  <xxxxxxxxxxxxxxxxsmallRNA(i)   --------->AHL20(2)  --------->YAB1       ------>MYB83       <-----------GT1                   <---------AHL20(2) <---------YAB1      --------->AtMYB61  --------->AHL20(2)                  --------->AHL20(2) ------GLK1(2)      --------->MYB46(3)  <---------AHL20(2)              --------->AHL20(2)----------- --AHL20(2) --------->AHL20(2) --------->ANAC58  --------->ANAC58   <---------YAB1       --------->At1g77200 >AHL20(2)  <---------AHL20(2)--------->DAG2  --------->LBD16    <---------AHL20(2)     --------->MYB46(3) -AHL20(2) --------->AHL20(2)---------->DOF2 --------->ANAC46<---------------AGL15      --------->DEAR3(2)   attctcataaatatttaataaaaccaaccaataaagcaacatttaaaccgcaagtcaaaaatactattttatgaataaataaataattcaaccgacaaaa  4920300                          --------->TOE2(3)                          ------->GAMYB                          --------->TOE1(3)                 xxxxxxxxxxxxxxxx>smallRNA(s)               --------->YAB1              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <<<<<<<<<ARR1              <<<<<<<<<ARR1                                                              <----------DOF2              <<<<<<<<<ARR2     <---------MYB59                              ------>ZmHOX2a(1)<------              <<<<<<<<<ARR2     ------->GAMYB                               --------->TOE2(3) <------            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             --------->WOX13(1)       ==============           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             --------->AHL20(2)        ------>ZmHOX2a(1)           --------->MYB46(3)--------->MYB52(1)              <---------AHL20(2)   --------->YAB1    <---------YAB1  --------->ZAT6        <---------ATHB12  --------->AHL20(2)   <---------ATHB12  <---------ICU4 ------>ZmHOX2a(1) --------->GLK1(1)      --------->YAB1   <xxxxxxxxxxxxxxxxsmallRNA(s) >RAV1(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     --------->ZAT6        <xxxxxxxxxxxxxxxxsmallRNA(s)   ctaagtatgactaacaatcctaacacaaccctaaccgaattccaataaccaaaacactaaaaataaatcaaacgagttcctaaatcatcctcttttcctt  4920400  Previous    Next  AGI:  At4g08054.1    Description:  transposable element gene. copia-like retrotransposon family, has a 7.0e-70 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element) Range:  from: 4916405    to: 4919896    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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