Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        <---------TOE2(3)                                                xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                 ---------->TaMYB80               <----------DOF2                     <---------CCA1(1)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     <---------RVE1(1)  --------->ARR11(3) <---------ICU4 --------->At4g35610      <-                    <---------AHL20(1)  <---------GLK1(2)  --------->MYB52(1)                      <-   ---------->DOF2  <---------ARR11(3)  --------->ARR14(2)xxxxxxxxxxxxxxxxxxx>smallRNA(i2)         -- -------->YAB1      --------->ARR11(3)  <---------ARR14(2)------>ZmHOX2a(1)                     ----- ------>GLK1(2)--------->WRKY18(1)      <---------ARR11(3)--------->ICU4<------ZmHOX2a(1)    <------- -->YAB1     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxx>smallRNA(i)  --------->YAB1<----   aatcagaaaggtttagggtcaagatattttcggcgaatatcagattttctaagaaatgtcctaatggcctttaaggagcagaaattagaattttgtgcta  4866200             --------->AHL20(1)             <---------AHL20(2)             --------->AHL20(2)         <---------AHL20(2)         --------->AHL20(2)                                                                   -------        --------->AHL20(2)                                                                    -------     --------->YAB1                                                                           <------   --------->ANAC58                                              <---------AHL20(2)           -------   --------->ANAC58                                              --------->AHL20(1)           ------- ----------HVH21                                                 --------->AHL20(2)        <---------SPL7 ----------TGA1  --------->YAB1                                 <---------AHL20(2)       <----------- ------->TOE2(3) -------->HAHB4                                 --------->AHL20(2)     <-----------GT1 ---->MYB52(1)   --------->ATHB12                          --------->AHL20(2)        --------->ICU4 --At4g35610--------->AHL20(2)    --------->ZAT6       ----------->GT1        --------->ICU4 -------- -----DOF5.7(2) <---------YAB1  --------->YAB1     <------ZmHOX2a(1)        --------->CCA1(2)--------   acgtcaagcataaaattaattataggcattccaataagactaatgaggcaataggaagggtttaaattaaattagaagacatgagtaattttcagtacgg  4866300                                                 <---------------AGL15                                                =====================================================                                                ----------------->AGL3                                                ----------------->AGL1                                              <---------PCF2                              <xxxxxxxxxxxxxxxxsmallRNA(s)                            ------>ZmHOX2a(2) --------->PCF2                           <------ZmHOX2a(2)  <---------TCP20        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------TCP15(1) <---------ANAC55(1)       --------->At4g35610<---------ARR14(2)  --------->PCF5     <---------ANAC46 -->ANAC58            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       --------->ANAC55(2) -->ANAC55(2)        -------->P               --------->TCP16(1) <---------ANAC55(2) ---ANAC55(2)       <-----------GT1        --------->ALFIN1  <---------MYB52(2)                     < -->ANAC46    --------->ARR11(3)        --------->DAG2    ---------->DOF2                           < -->ANAC58    <---------ARR11(3)       <---------ZAT14  --------->ANAC58                           <- ----AtSPL3   --------->AHL20(1)       ---------->DOF2  --------->ANAC46                        <---- ->SPL1(2)    <---------AHL20(1)    ----------->GT1     --------->ANAC58                <---------TOE2(3) ->SPL7<---------At4g35610--------->ARR14(2) <---------TCP16(2)--------->MYB52(1)      <-----------GT1   aattaagtcatcggaaaatattctacccgatcgccaagaagtaaagtggtcccactacaagaaagtaacgtattgatagcagtataatataacgttttat  4866400                                                                             ========================                                                                            --------->CCA1(2)                                                                            =========================                                                                            <------ZmHOX2a(2)                                                                           <---------AGP1                                                                     <------MYB83                       ------>ZmHOX2a(1)                             ----------->GT1                      --------->TOE2(3)                              <------MYB46(1)                      --------->TOE1(3)                             --------->MYB111(2)                   --------->ARR14(2)                               --------->MYB111(1)     <--------                   <---------ARR14(2)                               --------->MYB46(2)      ---------       --------------->AGL15                                        <---------MYB46(3)     <---------       <---------------AGL15                                       <---------MYB55(1) --------->HSFB2a(2)       ============================================================================================== ======================MADS_MADS                       --------->ANAC46    --------->AGP1 <---------GLK1(1) ---------DAG2    <---------GLK1(1)                    --------->ANAC58    --------->ARR11(3) ----------DOF2   --------->GLK1(1)            <---------DAG2      <--------P------>ZmHOX2a(2)     <- --------DAG2     <---------CCA1(2)            <----------DOF2    <---------MYB52(1)  <---------HSFB2a(2) -------GT1      ---------->TaMYB80   <---------ZAT6   --------->ANAC58    <---------ARR11(3) <------   acctttttgctatagttggcatatccttcaattttggatagtgtttgcactttacaaacgctatgtctggttggtaagatctaaatttttggaactcttt  4866500                                                                                --------->LBD16                                                                               --------->LBD16                                                                               --------->ANAC46                                                                          <---------At4g35610                                                                --------->AHL20(2)    ----------->GT1                                             <---------AHL20(1) <------ZmHOX2a(1)                                              --------->AHL20(1) =======HOX2a_HOX2a                                <---------ANAC46  <---------AHL20(2) =======HOX2a_HOX2a                                *TSS         <---------AHL20(2) -------AGL15                            <---------ANAC46      <---------AHL20(2)          <--------- ------>AGL15                          <---------ANAC46    <---------AHL20(2) <---------HSFB2a(2)   - --------AGL3                         <---------MYB52(1)   --------->AHL20(2) --------->HSFB2a(2)---- ========MADS_MADS        --------->MYB52(2)       <----------ID1   --------->AHL20(2)   --------->MYB52(1) --------TOE2(3)         <---------TOE1(2)    <-----------RAV1(1)   <---------AHL20(2)--------->ANAC55(2) ----DOF2               <---------MYB52(1)  <------------CBF   --------->AHL20(2)     <---------ANAC55(2)   ttaggaatgtagaatacatagcactcgttcgttttaaaacgttgtgtattgttgcgacgaataaaataaatttttttgctcccgaaatacttaacgaaaa  4866600                                                                                    <---------GLK1(1)          >>>>>>>>>MYB98                                                          --------->LBD16         --------->MYB52(1)                                  ------>ZmHOX2a(1)   --------->ANAC46 -ID1  <---------MYB46(2)                            <----------DOF2 <----------DOF2--------->GLK1(1) --------->DOF2    <---------YAB1        <-----------GT1 <-----------GT1   --------->WOX13(1) ------>DOF2      <-----------GT1    <------------------------ANAC81--------->TOE2(3)   aaagaagcgcctaacaaaattttcattctccctctccattgttttacttctcaagcttttttcctcactacctttgtcaatctccgaaatcccttgctcc  4866700                                                      --------->MYB52(1)                                                      ------>MYB46(1)                                                      ------>MYB83                                                    <---------MYB46(2)                                                    <---------MYB59                           <---------HSFC1(2)  ------>ZmHOX2a(1)                           --------->HSFC1(2) --------->TOE1(3)                          ------>MYB83     <---------ARR11(3)                       <-----------GT1            ------>ZmHOX2a(1)              --------->ARR11(3)           ------>ZmHOX2a(1)           --------->TOE2(3)<---------GLK1(2) --------->TOE2(3)   --------->At4g35610        --------->ARR14(2)------>MYB46(1) --------->RVE1(1)       <---------At4g35610   ctcttcaccaattcctcaaatttagaccaagcttctcttcgaaaaaatccttaacctaaccatgagtcatcttcctcttctccattttactctcgttgca  4866800                   --------->ANAC58               --------->ANAC58               --------->ANAC58             ---------->DOF2            <---------WRKY12           <------NtERF2          <-----------HVH21          ------>NtERF2         <---------ATERF1(2)         --------->DEAR3(1)         --------->ATERF1(2)         --------->RAP2.6(2)         --------->RRTF1(2)         --------->RAP2.3(3)         --------->RAP2.3(2)         --------->RRTF1(3)        --------->ERF1        <------NtERF2        --------->RRTF1(1)        --------->RAP2.3(1)        --------->ATERF1(1)       <---------ATERF1(1)                                                                --------->RAP2.3(3)       ------>NtERF2                                           ------>ZmHOX2a(2)        ------>NtERF2      --------->DEAR3(1)                                       <-------TEIL             --------->ZAT18      --------->ANAC46                                        <------ZmHOX2a(2)         <---------ZAT18      --------->RAP2.3(2)               --------->ARR14(2)   <---------ARR14(2)        --------->DEAR3(1)      --------->RAP2.6(2)          ------>MYB46(1)           --------->ARR14(2)       --------->At4g35610     --------->MYB46(3)           <---------ALFIN1           --------->ARR11(3)       <---------At4g35610     --------->ERF1--------->ANAC58------>MYB83              <---------ARR11(3)       --------->ATERF1(1)     --------->RAP2.3(1)         --------->MYB46(3)        ----------->ARR10          <------NtERF2     --------->DEAR3(2)        ------->TEIL              ---------->DOF2             ------>NtERF2    <---------ATERF1(1)    --------------->AtSPL8   <---------HSFB2a(2)              <---------ATERF1(1)   aaccctagccgccgtcaaagcaagcgagacatgtacccactcgatactcatggtccagacaaagatccgtcttagtttgaaagatgccagcgccctcatg  4866900                                              --------->WOX13(1)                                      ------>ZmHOX2a(2)                                     <------ZmHOX2a(2)                                    --------->ARR14(2)                                    <---------ARR11(3)                                    --------->ARR11(3)                                    --------->AGP1                                    <---------AGP1                <---------At4g35610 <---------ARR14(2)                                          <----                --------->At4g35610<---------CCA1(2)                                            -----             ===============================HOX2a_HOX2a                                     <--------             ------>ZmHOX2a(1) <-----------HVH21<---------ATHB12                   --------->YAB1             ================================HOX2a_HOX2a          --------->AHL20(2)     <----------DOF2     <---------GLK1(2)   ====================HOX2a_HOX2a          <---------AHL20(2) <---------CCA1(2) <---------At4g35610     ===================HOX2a_HOX2a------->TEIL       <---------ATHB12  <-------- ------>ZmHOX2a(1)       ------>ZmHOX2a(1)--------->YAB1  <---------AHL20(2)     <-----------GT1<----   ttcctctgattcttcctcatcttactcctattccttcagatctataatcaatcaatgtattttcttattttattcaatcgatttatcatctcttttgttg  4867000                                                                               ======================                                                                               ------>ZmHOX2a(2)                                                 -------->HAHB4               --------------->AtSPL8                                                 <--------ATHB1               --------------->AtSPL3                                                 --------->ATHB12            --------->ARR14(2) --MYB83                            --------->ICU4      <---------WOX13(1)   <---------ARR14(2) ------>GT1                     --------->ZAT18  <---------ICU4              <---------ARR11(3) ---RAV1(1)                  <---------ANAC46   <---------YAB1              <------ZmHOX2a(1) -MYB46(3)           <------ZmHOX2a(2)          <---------ATHB12         --------->LBD16 --MYB46(1)    <-----------GT1  <---------ZAT18 --------->ICU4       ------->TEIL           ------->TEIL   gtaaattgatgtctgtgttacagatcaaatgttgtgaactaattagcctaatgattcgattgattttggtgaacccgaggatcgtacaagtatgtagcta  4867100  Previous    Next  AGI:  At4g08035.1    Description:  other RNA Range:  from: 4866551    to: 4868340    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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