Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <---------WOX13(1)               --------->ATHB12   --------->ANAC55(2) -----WOX13(1) -------->HAHB4                                                               --------- -->ATHB12    --------->ICU4             --------->ZAT6                                     <-------- --YAB1       <---------YAB1        --------->YAB1                                         --------->YAB1 -DOF2----------->GT1              <---------YAB1                                         <---------YAB1   tggataagtgtttaaaatgattgtccaagtttgtattttcataagactattcacatagattaaacttatattgaacacagtagaataagcttatgatatt  4788100                                                                                            ---------                                                   <---------ANAC58  <---------ANAC46   <-----------GT1                                                   <---------ANAC58  <---------ANAC58   --------->YAB1                                 <---------ICU4    --------->ANAC55(2)                 <---------YAB1                <---------ARR14(2)           --------->ARR11(3)<---------ARR11(3)    <--------HAHB4                <---------ARR11(3)           <---------ARR11(3)--------->ARR11(3)    <---------ICU4        <---------ANAC46         --------->YAB1    <---------ANAC55(2)              --------->ICU4    <---------GLK1(2)           <---------ATHB12 <-----------GT1     <---------ANAC58--------->ATHB51 >ARR11(3)      --------->ARR11(3)          --------->YAB1    --------->YAB1     <-------TEIL -ARR11(3)      --------->ARR14(2)         <---------ATHB12  <---------YAB1   --------->At4g35610   gagccagattgtgtagaagatttgtctatgctcaatgataactcaatgatattacttgatgtgatgatattacttggattagatgcattattacaatctg  4788200                                                  <---------ANAC58                                                  <---------ANAC58     --------->REM1(2)                     <---------ANAC58  <---------ANAC46                         <---------ANAC58 >GLK1(2)                                  <---------ANAC46       --------->ZAT6 --------->AHL20(2)   gattatgtgtagactagtttgatgcttcttgttaacaagtttattgcttattgcttaagacttatttaagactagacttccatattaataggttctatct  4788300                                                                                ------>MYB83                                                                                ------>MYB46(1)                                                                              <---------MYB59                                                                              <---------MYB111(1)                                                                              <---------------AGL15                                                                              --------------->AGL15                                                                              <---------MYB46(2)                                                                             <-----------------AGL3                                                                             <-----------------AGL1                                                                             ----------------->AGL3                                                                             ----------------->AGL2                       <---------MYB52(1)                             <---------HSFC1(2)                     <---------ZAT6                                   --------->HSFC1(2)                 <---------ZAT14                                --------->TOE1(3)                 --------->ZAT14                                --------->TOE2(3)                <----------DOF2                        <---------MYB46(3)    <-----------------AG           <----------DOF2 --------->TOE2(3)        <-----------RAV1(1)      ----------------->AG ------>NtERF2  <---------DAG2     <-----------GT1 <---------YAB1  ---------->DOF2          <--------   ctctgcccctatgctttactttactgttatctcaatttttctatgtatgaagtattgttgttgaaacctgaaagcttctacctaatatggttctctttta  4788400                                                                                     --------->ARR11(3)                                                                                     <---------GLK1(2)                                                                                     <---------ARR14(3)                                                                                     <---------ARR11(3)                                                                           <---------RAP2.6(2)                                                   *TSS                   <---------ZAT18                                          <---------ARR14(2) <---------AHL20(2)      --------->ARR14(3)                                     --------->MYB52(1)    <---------WOX13(1)<-----------HVH21                                   <---------MYB52(2)    --------->ATHB12 --------->ZAT14        <---------At4g35610        --------->MYB46(3)   --------->ICU4    --------->ZAT18<---------AtMYB61     ---------->DOF2         --------->YAB1 ------------>CBF<---------AHL20(2) --------->ANAC58 --DOF2 --------->At4g35610 --------->ICU4--------->ARR14(2)--------->AHL20(2) --------->ANAC58   tgtgtctcaaagctgaaacaagtgagagcgataatcaactatcgaatccaatgtggaattgattaatttagataagtgcggtcgcaagattttggtggag  4788500                                <---------ANAC58         ------->TEIL<---------ZAT14           <---------ZAT14          <---------TOE1(3)       <----         <---------ARR14(2)     <---------ANAC58                        --------->MYB59         <----         --------->GLK1(2)      <---------ANAC46                        <---------TOE2(3)      ------    ----------->GT1  --------->ZAT18           --------->ZAT14---------->DOF2 <---------LBD16  <-----   ttcgaatggtgaatctagaggtatgcactgaatggcttggaacaatttgtgtagtagcaaattggaaagtggtttaggttttcggagtatagatgatttt  4788600                                                    <----------DOF2                                                    <---------DAG2                                               --------->GLK1(2)                                        --------->ARR14(2)    --------->AGP1                 --------->MYB52(1)                                   --------->GLK1(1)   <---------At4g35610          --------->YAB1<---------ARR14(2)                <---------YAB1   --------->At4g35610       <-------GAMYB    --------->ARR14(2)              <---------RVE1(1) -----AHL20(2)             <---------ANAC58   <---------GLK1(2)              <---------ARR11(3) -----YAB1                 <---------ANAC58--------->HSFB2a(2)               --------->ARR11(3)   --- --->AHL20(2)         <---------ICU4    <---------ARR14(2)   <---------TOE2(3)<---------CCA1(1)<----- ----AHL20(2)--------->YAB1<---------ANAC46<---------HSFB2a(2)        ---------->DOF2   <---------GLK1(1)   aattcagctctactatcgaaatagttatggcgtttgataacggttccagattctctttttgcaaaggttttcaaaaggagatattatcggaaatccaatc  4788700                                                                      <---------AHL20(2)                                                                      --------->AHL20(2)                                                                  >>>>>>>>>GT-1                                                               ----------->GT1                                                           ------>ZmHOX2a(2)                                                          <---------GLK1(1)                                                          <------ZmHOX2a(2)                                                          <<<<<<<<<GATA-1                                                          <<<<<<<<<GATA-2                                                          <<<<<<<<<GATA-3                                                          <<<<<<<<<GATA-4                                                         <---------AGP1                                                         --------->ARR11(3)          <---------AHL20(2)                             <---------ARR11(3)        ---------->DOF2         --------->AHL20(2)                             <---------CCA1(2)         <---------AHL20(2) --->ZmHOX2a(1)                                     --------->At4g35610         <---------YAB1   ---- ----ATHB12   --------->YAB1  <---------YAB1        <---------At4g35610---------->DOF2         <-----   ctttgaaaatataaaatcatactctccgtcttataaatggagaagtatttgttcagctagatctctggttaataaaagacttattaaaagagtcgattca  4788800                                   ------>NtERF2                                   --------->LBD16                                  <---------RAP2.6(2)                                 <---------LBD16                              <-----------GT1                           <---------MYB52(1)                             <---------ICU4                        ------>ZmHOX2a(2)                                 <--------ATHB1                       <------ZmHOX2a(2)                                  -------->ATHB1                      <---------AGP1                                      --------->ATHB12                      --------->GLK1(2)                     --------->ANAC55(2)                      --------->ARR11(3)                  <---------ATHB12--------->ATHB51                      --------->ARR14(2)                  --------->ICU4  <------------ATHB5                      <---------ARR14(2)             --------->ANAC58    <---------ATHB51                      <---------ARR11(3)             --------->ANAC58    <---------ATHB12                     <------ZmHOX2a(1)         --------->LBD16           --------->ICU4                    <---------HSFC1(2)        --------->LBD16            <---------YAB1          ----                    --------->HSFB2a(1)       --------->ANAC46 --------->MYB52(1)     --------->TOE2(3) ----->LBD16        --------->HSFC1(2)       <---------HSFB2a(2)      ------------>ATHB5  ---------->DOF2 ------RAV1(2)      <---------HSFB2a(1) --------------->ANT <---------ANAC55(2)       <----------DOF2   ggggcatccatctcagtttggaaggatctgttgattccggctcaattcccgagactagcaataagtaatggttcaattattgacccatctttaaaagtcc  4788900                                                                                                   <-                                                                                                 ----                                      ================HOX2a_HOX2a                              <-----                  <---------WRKY12    ------>ZmHOX2a(2)      --------->LBD16            <---------ZAT18                 --------->WRKY18(1)<---------ARR11(3)      --------->HSFB2a(2)         --------->ZAT14               ----------->GT1      --------->ARR11(3)      <---------HSFB2a(2)    <---------ZAT14 <-       <---------AHL20(2)          <---------ICU4          ------>ZmHOX2a(2)       --------->ZAT18 <-      --------->AHL20(2)           --------->YAB1          <---------LBD16         --------->ZAT14<--   <---------AHL20(2)           --------->YAB1     <----------DOF2                 <-------TEIL<-----   --------->AHL20(2)           <---------ICU4 <------ZmHOX2a(1)  <---------ARR11(3)    <---------ZAT14  --------->AHL20(2)           --------->ICU4  ===================HOX2a_HOX2a  <---------ICU4  <----- ------->RAV1(1)<-----------HVH21 --------->ICU4   <---------DAG2 --------->ARR11(3)  xxxxxxxxxxxxxxx   aacatttaataaatagccggtcaaatttttggaataatgatctcttgaaggagctttttgatccggaagatgtcaaactaataagtgcattgcacttggg  4789000  Previous    Next  AGI:  At4g07945.1    Description:  transposable element gene. pseudogene, similar to putative reverse transcriptase, similar to reverse transcriptase, putative; blastp match of 30% identity and 1.1e-35 P-value to GP|20279456|gb|AAM18736.1|AC092548_14|AC092548 putative reverse transcriptase {Oryza sativa (japonica cultivar-group)} Range:  from: 4788451    to: 4790016    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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